Wall clock time and date at job start Tue Mar 31 2020 16:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34782 * 119.99983 * 2 1 4 4 O 1.21284 * 120.00072 * 184.62117 * 3 2 1 5 5 C 1.50701 * 119.99804 * 4.61656 * 3 2 1 6 6 H 1.09005 * 110.34561 * 326.93970 * 5 3 2 7 7 C 1.54348 * 110.30071 * 89.06446 * 5 3 2 8 8 C 1.54343 * 102.38978 * 92.57149 * 7 5 3 9 9 C 1.51375 * 105.17344 * 26.35157 * 8 7 5 10 10 C 1.38463 * 130.36437 * 163.12586 * 9 8 7 11 11 C 1.38332 * 120.19124 * 180.23350 * 10 9 8 12 12 F 1.35104 * 120.05631 * 179.69792 * 11 10 9 13 13 C 1.38472 * 119.88291 * 359.42465 * 11 10 9 14 14 C 1.38069 * 119.90744 * 0.27513 * 13 11 10 15 15 C 1.38226 * 109.75727 * 342.80755 * 9 8 7 16 16 C 1.46499 * 120.00280 * 179.97438 * 2 1 3 17 17 C 1.53781 * 113.61489 * 39.13440 * 16 2 1 18 18 C 1.53949 * 87.01985 * 220.05025 * 17 16 2 19 19 N 1.46503 * 113.53914 * 270.80813 * 18 17 16 20 20 C 1.36935 * 120.00297 * 252.50106 * 19 18 17 21 21 H 1.07996 * 120.00043 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00062 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99673 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47548 * 59.99793 * 24 22 20 26 26 H 1.48499 * 109.47123 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47053 * 299.99185 * 24 22 20 28 28 C 1.53771 * 87.11585 * 25.36502 * 18 17 16 29 29 H 1.09007 * 109.47076 * 94.29766 * 1 2 3 30 30 H 1.09001 * 109.47445 * 214.29641 * 1 2 3 31 31 H 1.09004 * 109.47511 * 334.29846 * 1 2 3 32 32 H 1.08999 * 110.81871 * 210.79101 * 7 5 3 33 33 H 1.08994 * 110.82531 * 334.34520 * 7 5 3 34 34 H 1.08995 * 110.30850 * 145.28225 * 8 7 5 35 35 H 1.09005 * 110.29941 * 267.42958 * 8 7 5 36 36 H 1.07997 * 119.90733 * 359.93797 * 10 9 8 37 37 H 1.07999 * 120.05048 * 180.29627 * 13 11 10 38 38 H 1.07994 * 119.87448 * 179.97438 * 14 13 11 39 39 H 1.09001 * 112.85296 * 170.33620 * 16 2 1 40 40 H 1.08999 * 113.61367 * 334.57681 * 17 16 2 41 41 H 1.09008 * 113.60875 * 105.46855 * 17 16 2 42 42 H 1.08999 * 113.74064 * 139.94701 * 18 17 16 43 43 H 0.97001 * 119.99580 * 72.49592 * 19 18 17 44 44 H 0.96996 * 119.99771 * 179.97438 * 23 22 20 45 45 H 1.08996 * 113.62016 * 220.09307 * 28 18 17 46 46 H 1.09005 * 113.69403 * 89.19423 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3487 1.1690 -0.0846 5 6 1.3889 2.4702 0.1050 6 1 0.4209 2.3913 -0.3898 7 6 1.2029 2.8631 1.5860 8 6 2.4338 3.7566 1.8487 9 6 2.8006 4.3329 0.4979 10 6 3.6012 5.4144 0.1718 11 6 3.7922 5.7643 -1.1528 12 9 4.5691 6.8239 -1.4676 13 6 3.1903 5.0232 -2.1558 14 6 2.3969 3.9410 -1.8305 15 6 2.2002 3.5937 -0.5041 16 6 2.1975 -1.2687 0.0006 17 6 1.5590 -2.3491 -0.8882 18 6 1.9074 -3.3555 0.2234 19 7 3.2379 -3.9513 0.0773 20 6 3.3640 -5.2576 -0.3135 21 1 2.4827 -5.8486 -0.5145 22 6 4.6246 -5.8223 -0.4514 23 7 5.6986 -5.1018 -0.2070 24 14 4.7966 -7.6040 -0.9852 25 1 4.1754 -7.7825 -2.3222 26 1 6.2359 -7.9625 -1.0569 27 1 4.1154 -8.4834 -0.0015 28 6 1.8674 -2.1701 1.2020 29 1 -0.3633 -0.0770 -1.0248 30 1 -0.3634 -0.8490 0.5791 31 1 -0.3634 0.9260 0.4457 32 1 0.2794 3.4253 1.7246 33 1 1.2207 1.9811 2.2261 34 1 2.1793 4.5560 2.5445 35 1 3.2571 3.1600 2.2416 36 1 4.0742 5.9895 0.9541 37 1 3.3414 5.2911 -3.1911 38 1 1.9274 3.3637 -2.6131 39 1 3.2667 -1.1402 -0.1681 40 1 0.4874 -2.2155 -1.0363 41 1 2.0977 -2.5223 -1.8200 42 1 1.1292 -4.0971 0.4036 43 1 4.0294 -3.4203 0.2573 44 1 6.5795 -5.4964 -0.3030 45 1 2.6545 -2.1990 1.9554 46 1 0.8807 -1.9866 1.6275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999125963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:12 Heat of formation + Delta-G solvation = -14.247249 kcal Electronic energy + Delta-G solvation = -28175.458772 eV Core-core repulsion = 24173.497409 eV Total energy + Delta-G solvation = -4001.961362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.06846 -41.05182 -39.50609 -37.87294 -35.52662 -34.80805 -32.98656 -31.75854 -29.85835 -29.06473 -28.04125 -27.08322 -25.14331 -24.51034 -23.34511 -23.07173 -21.55662 -21.38314 -19.28705 -18.26599 -17.65184 -17.32263 -17.10207 -16.68890 -16.39555 -15.76469 -15.51706 -15.30048 -14.89784 -14.69203 -14.45938 -13.96211 -13.86249 -13.56351 -13.20650 -13.11100 -13.04481 -12.73890 -12.57578 -12.41376 -12.13756 -12.08343 -11.96234 -11.79334 -11.55217 -11.49505 -11.35032 -11.06013 -10.86245 -10.76475 -10.26135 -10.20175 -9.83045 -9.69142 -9.54475 -9.13551 -8.91624 -8.62424 -8.41471 -7.02082 -5.79604 -3.10129 0.91043 1.02129 2.63636 3.01486 3.41081 3.42610 3.46824 3.48436 3.84081 4.08274 4.24688 4.46521 4.55315 4.66141 4.68563 4.78169 4.92540 4.97212 5.03717 5.12291 5.13205 5.26677 5.33508 5.37818 5.40386 5.44933 5.47742 5.49470 5.61275 5.67408 5.77996 5.81563 5.85755 5.91251 5.98748 6.02787 6.06773 6.21167 6.30130 6.39365 6.56028 6.67191 6.69553 6.77895 7.01611 7.52729 7.67665 8.27177 8.38389 9.48943 10.05447 10.39355 11.42386 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.002466 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.218608 B =11350.432814 C =12142.979692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.602 5.602 3 C 0.518 3.482 4 O -0.526 6.526 5 C -0.072 4.072 6 H 0.104 0.896 7 C -0.106 4.106 8 C -0.083 4.083 9 C -0.052 4.052 10 C -0.145 4.145 11 C 0.101 3.899 12 F -0.141 7.141 13 C -0.155 4.155 14 C -0.066 4.066 15 C -0.086 4.086 16 C 0.125 3.875 17 C -0.182 4.182 18 C 0.173 3.827 19 N -0.705 5.705 20 C -0.247 4.247 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.910 3.090 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.168 4.168 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.070 0.930 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.215 21.944 2.092 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.335 5.335 3 C 0.305 3.695 4 O -0.402 6.402 5 C -0.093 4.093 6 H 0.122 0.878 7 C -0.144 4.144 8 C -0.120 4.120 9 C -0.052 4.052 10 C -0.163 4.163 11 C 0.082 3.918 12 F -0.119 7.119 13 C -0.173 4.173 14 C -0.085 4.085 15 C -0.086 4.086 16 C 0.022 3.978 17 C -0.224 4.224 18 C 0.060 3.940 19 N -0.344 5.344 20 C -0.378 4.378 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.208 4.208 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.221 0.779 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.496 21.762 1.988 25.684 hybrid contribution 0.536 -0.569 -0.505 0.931 sum -12.960 21.194 1.483 24.886 Atomic orbital electron populations 1.21798 0.80215 1.02982 1.01995 1.47960 1.06626 1.06093 1.72788 1.20307 0.87983 0.84633 0.76595 1.90742 1.13982 1.87013 1.48424 1.20854 0.99093 0.91401 0.97965 0.87845 1.22261 0.98721 1.00237 0.93154 1.21097 0.98378 0.98843 0.93633 1.20312 0.94897 0.93568 0.96404 1.20479 1.01771 0.99218 0.94865 1.17486 0.94104 0.86775 0.93462 1.91496 1.72652 1.54105 1.93664 1.20973 1.00065 0.97032 0.99265 1.20436 0.97116 0.95617 0.95286 1.20060 0.99382 0.95876 0.93310 1.22760 0.97817 0.79541 0.97647 1.24319 0.99448 0.97839 1.00784 1.20928 0.89877 0.91276 0.91953 1.42210 1.01000 1.11051 1.80132 1.19215 0.92327 0.87682 1.38571 0.90992 1.24793 0.95424 0.98353 1.02163 1.69661 0.97235 1.35914 1.54884 0.86239 0.76666 0.84616 0.78464 1.21199 1.21657 1.21177 1.23958 1.01317 0.97785 0.97783 0.92536 0.90597 0.91108 0.89556 0.89700 0.89987 0.89165 0.84887 0.84520 0.85243 0.86457 0.91038 0.91012 0.91426 0.77937 0.93282 0.91145 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 8.64 59.84 0.52 1.15 16 2 N -0.60 -7.91 3.08 -173.00 -0.53 -8.45 16 3 C 0.52 7.34 6.69 -10.98 -0.07 7.27 16 4 O -0.53 -9.99 15.79 5.55 0.09 -9.91 16 5 C -0.07 -0.72 2.33 -91.89 -0.21 -0.93 16 6 H 0.10 0.77 6.57 -51.93 -0.34 0.43 16 7 C -0.11 -0.83 6.33 -25.32 -0.16 -0.99 16 8 C -0.08 -0.74 6.76 -26.85 -0.18 -0.92 16 9 C -0.05 -0.57 6.14 -104.21 -0.64 -1.20 16 10 C -0.14 -1.57 10.02 -39.46 -0.40 -1.96 16 11 C 0.10 1.15 7.30 -39.46 -0.29 0.86 16 12 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 13 C -0.15 -1.64 10.03 -39.56 -0.40 -2.04 16 14 C -0.07 -0.72 10.04 -39.54 -0.40 -1.12 16 15 C -0.09 -0.97 4.87 -104.19 -0.51 -1.48 16 16 C 0.12 2.06 4.10 -67.11 -0.28 1.79 16 17 C -0.18 -3.05 7.38 -25.83 -0.19 -3.24 16 18 C 0.17 3.32 4.57 -67.03 -0.31 3.02 16 19 N -0.71 -17.62 5.31 -52.56 -0.28 -17.90 16 20 C -0.25 -6.80 9.97 -15.06 -0.15 -6.95 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C -0.17 -2.71 7.38 -25.92 -0.19 -2.90 16 29 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.08 0.62 6.52 -51.93 -0.34 0.28 16 31 H 0.07 0.43 5.93 -51.93 -0.31 0.12 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.12 2.40 7.20 -51.93 -0.37 2.02 16 40 H 0.07 0.98 6.86 -51.93 -0.36 0.63 16 41 H 0.07 1.39 8.14 -51.92 -0.42 0.96 16 42 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 43 H 0.39 10.43 7.90 -40.82 -0.32 10.10 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.08 1.01 6.77 -51.93 -0.35 0.66 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -33.57 376.25 -9.83 -43.40 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.57 Total: 9.13 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.94 Total: -10.04 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.09 Total: -53.90 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.57 -9.83 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999125963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.148 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds