Wall clock time and date at job start Tue Mar 31 2020 16:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34782 * 119.99983 * 2 1 4 4 O 1.21284 * 120.00072 * 184.62117 * 3 2 1 5 5 C 1.50701 * 119.99804 * 4.61656 * 3 2 1 6 6 H 1.09005 * 110.34561 * 326.93970 * 5 3 2 7 7 C 1.54348 * 110.30071 * 89.06446 * 5 3 2 8 8 C 1.54343 * 102.38978 * 92.57149 * 7 5 3 9 9 C 1.51375 * 105.17344 * 26.35157 * 8 7 5 10 10 C 1.38463 * 130.36437 * 163.12586 * 9 8 7 11 11 C 1.38332 * 120.19124 * 180.23350 * 10 9 8 12 12 F 1.35104 * 120.05631 * 179.69792 * 11 10 9 13 13 C 1.38472 * 119.88291 * 359.42465 * 11 10 9 14 14 C 1.38069 * 119.90744 * 0.27513 * 13 11 10 15 15 C 1.38226 * 109.75727 * 342.80755 * 9 8 7 16 16 C 1.46499 * 120.00280 * 179.97438 * 2 1 3 17 17 C 1.53781 * 113.61489 * 39.13440 * 16 2 1 18 18 C 1.53949 * 87.01985 * 220.05025 * 17 16 2 19 19 N 1.46503 * 113.53914 * 270.80813 * 18 17 16 20 20 C 1.36935 * 120.00297 * 252.50106 * 19 18 17 21 21 H 1.07996 * 120.00043 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00062 * 180.02562 * 20 19 18 23 23 N 1.31621 * 119.99673 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00016 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47548 * 59.99793 * 24 22 20 26 26 H 1.48499 * 109.47123 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47053 * 299.99185 * 24 22 20 28 28 C 1.53771 * 87.11585 * 25.36502 * 18 17 16 29 29 H 1.09007 * 109.47076 * 94.29766 * 1 2 3 30 30 H 1.09001 * 109.47445 * 214.29641 * 1 2 3 31 31 H 1.09004 * 109.47511 * 334.29846 * 1 2 3 32 32 H 1.08999 * 110.81871 * 210.79101 * 7 5 3 33 33 H 1.08994 * 110.82531 * 334.34520 * 7 5 3 34 34 H 1.08995 * 110.30850 * 145.28225 * 8 7 5 35 35 H 1.09005 * 110.29941 * 267.42958 * 8 7 5 36 36 H 1.07997 * 119.90733 * 359.93797 * 10 9 8 37 37 H 1.07999 * 120.05048 * 180.29627 * 13 11 10 38 38 H 1.07994 * 119.87448 * 179.97438 * 14 13 11 39 39 H 1.09001 * 112.85296 * 170.33620 * 16 2 1 40 40 H 1.08999 * 113.61367 * 334.57681 * 17 16 2 41 41 H 1.09008 * 113.60875 * 105.46855 * 17 16 2 42 42 H 1.08999 * 113.74064 * 139.94701 * 18 17 16 43 43 H 0.97001 * 119.99580 * 72.49592 * 19 18 17 44 44 H 0.96996 * 119.99771 * 179.97438 * 23 22 20 45 45 H 1.08996 * 113.62016 * 220.09307 * 28 18 17 46 46 H 1.09005 * 113.69403 * 89.19423 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3487 1.1690 -0.0846 5 6 1.3889 2.4702 0.1050 6 1 0.4209 2.3913 -0.3898 7 6 1.2029 2.8631 1.5860 8 6 2.4338 3.7566 1.8487 9 6 2.8006 4.3329 0.4979 10 6 3.6012 5.4144 0.1718 11 6 3.7922 5.7643 -1.1528 12 9 4.5691 6.8239 -1.4676 13 6 3.1903 5.0232 -2.1558 14 6 2.3969 3.9410 -1.8305 15 6 2.2002 3.5937 -0.5041 16 6 2.1975 -1.2687 0.0006 17 6 1.5590 -2.3491 -0.8882 18 6 1.9074 -3.3555 0.2234 19 7 3.2379 -3.9513 0.0773 20 6 3.3640 -5.2576 -0.3135 21 1 2.4827 -5.8486 -0.5145 22 6 4.6246 -5.8223 -0.4514 23 7 5.6986 -5.1018 -0.2070 24 14 4.7966 -7.6040 -0.9852 25 1 4.1754 -7.7825 -2.3222 26 1 6.2359 -7.9625 -1.0569 27 1 4.1154 -8.4834 -0.0015 28 6 1.8674 -2.1701 1.2020 29 1 -0.3633 -0.0770 -1.0248 30 1 -0.3634 -0.8490 0.5791 31 1 -0.3634 0.9260 0.4457 32 1 0.2794 3.4253 1.7246 33 1 1.2207 1.9811 2.2261 34 1 2.1793 4.5560 2.5445 35 1 3.2571 3.1600 2.2416 36 1 4.0742 5.9895 0.9541 37 1 3.3414 5.2911 -3.1911 38 1 1.9274 3.3637 -2.6131 39 1 3.2667 -1.1402 -0.1681 40 1 0.4874 -2.2155 -1.0363 41 1 2.0977 -2.5223 -1.8200 42 1 1.1292 -4.0971 0.4036 43 1 4.0294 -3.4203 0.2573 44 1 6.5795 -5.4964 -0.3030 45 1 2.6545 -2.1990 1.9554 46 1 0.8807 -1.9866 1.6275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999125963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:11 Heat of formation + Delta-G solvation = -34.342003 kcal Electronic energy + Delta-G solvation = -28176.330145 eV Core-core repulsion = 24173.497409 eV Total energy + Delta-G solvation = -4002.832736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.95470 -41.97403 -40.62285 -39.13111 -36.37071 -36.15108 -34.74253 -32.60841 -31.75252 -29.82187 -28.91861 -27.92708 -26.56068 -26.18455 -24.71505 -24.01752 -22.61812 -22.15347 -20.37056 -19.65432 -19.31330 -18.40127 -18.10170 -17.56770 -17.47098 -16.72203 -16.65134 -16.50133 -16.18294 -15.86196 -15.52887 -15.29949 -15.06639 -14.63927 -14.49181 -14.26998 -14.05318 -13.91316 -13.43259 -13.40646 -13.27330 -13.21567 -13.11756 -12.82120 -12.72740 -12.63724 -12.49498 -12.21875 -12.21291 -12.07971 -11.83453 -11.79563 -11.65691 -11.20365 -10.90824 -10.69634 -9.94272 -9.52630 -9.46919 -9.04717 -7.96091 -5.26464 0.06455 0.21517 1.46521 1.50273 1.56367 1.59303 2.02125 2.54861 2.56535 3.05723 3.31786 3.35725 3.47042 3.58806 3.74858 3.86589 3.88153 3.91944 3.98056 4.09083 4.22591 4.24165 4.28575 4.34981 4.38119 4.57588 4.63425 4.74203 4.74729 4.77941 4.83346 4.86388 4.96634 5.00100 5.04387 5.08709 5.10206 5.12929 5.19353 5.25279 5.26897 5.34294 5.49510 5.51905 5.74003 5.87027 6.25641 6.50159 7.22167 7.29951 8.06468 8.27865 9.27377 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.002466 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.218608 B =11350.432814 C =12142.979692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.598 5.598 3 C 0.511 3.489 4 O -0.589 6.589 5 C -0.063 4.063 6 H 0.139 0.861 7 C -0.099 4.099 8 C -0.085 4.085 9 C -0.064 4.064 10 C -0.154 4.154 11 C 0.083 3.917 12 F -0.147 7.147 13 C -0.161 4.161 14 C -0.077 4.077 15 C -0.102 4.102 16 C 0.128 3.872 17 C -0.161 4.161 18 C 0.152 3.848 19 N -0.725 5.725 20 C -0.243 4.243 21 H 0.085 0.915 22 C -0.081 4.081 23 N -0.974 5.974 24 Si 0.978 3.022 25 H -0.276 1.276 26 H -0.300 1.300 27 H -0.273 1.273 28 C -0.146 4.146 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.065 0.935 40 H 0.115 0.885 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.369 0.631 44 H 0.250 0.750 45 H 0.047 0.953 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 22.359 2.534 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.329 5.329 3 C 0.301 3.699 4 O -0.468 6.468 5 C -0.084 4.084 6 H 0.157 0.843 7 C -0.136 4.136 8 C -0.122 4.122 9 C -0.064 4.064 10 C -0.173 4.173 11 C 0.064 3.936 12 F -0.125 7.125 13 C -0.179 4.179 14 C -0.095 4.095 15 C -0.103 4.103 16 C 0.024 3.976 17 C -0.202 4.202 18 C 0.041 3.959 19 N -0.362 5.362 20 C -0.374 4.374 21 H 0.102 0.898 22 C -0.272 4.272 23 N -0.624 5.624 24 Si 0.806 3.194 25 H -0.202 1.202 26 H -0.226 1.226 27 H -0.199 1.199 28 C -0.185 4.185 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.164 0.836 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.201 0.799 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.736 22.190 2.432 28.511 hybrid contribution 1.753 -0.626 -0.649 1.972 sum -15.982 21.563 1.783 26.900 Atomic orbital electron populations 1.22225 0.76689 1.05534 1.03626 1.47988 1.08567 1.04402 1.71935 1.21147 0.87510 0.86140 0.75146 1.90723 1.16957 1.87937 1.51217 1.20922 0.99482 0.88065 0.99907 0.84308 1.22370 0.99599 1.00392 0.91235 1.21176 0.98410 0.99555 0.93072 1.20646 0.94688 0.93492 0.97550 1.20721 1.01850 0.99598 0.95106 1.17730 0.94672 0.87092 0.94142 1.91475 1.72898 1.54405 1.93744 1.21221 0.99775 0.96927 1.00024 1.20713 0.97229 0.95762 0.95836 1.20393 0.99878 0.96359 0.93628 1.22242 0.95747 0.81684 0.97927 1.24126 1.01532 0.96382 0.98203 1.21281 0.87510 0.92663 0.94419 1.42433 1.02779 1.10493 1.80536 1.19695 0.92604 0.88761 1.36384 0.89762 1.25674 0.95304 1.02687 1.03583 1.69850 0.97419 1.37740 1.57429 0.85148 0.76020 0.79749 0.78466 1.20249 1.22607 1.19882 1.23813 1.02890 0.95399 0.96426 0.91131 0.89306 0.87648 0.85743 0.89563 0.87376 0.91406 0.83592 0.82951 0.83785 0.91649 0.86657 0.94268 0.90202 0.79920 0.94102 0.93438 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 8.64 127.77 1.10 1.84 16 2 N -0.60 -14.41 3.08 -819.62 -2.53 -16.94 16 3 C 0.51 13.98 6.69 87.66 0.59 14.57 16 4 O -0.59 -23.31 15.79 -3.04 -0.05 -23.36 16 5 C -0.06 -1.07 2.33 -11.61 -0.03 -1.10 16 6 H 0.14 1.36 6.57 -2.38 -0.02 1.34 16 7 C -0.10 -1.18 6.33 31.51 0.20 -0.98 16 8 C -0.09 -1.38 6.76 30.52 0.21 -1.18 16 9 C -0.06 -1.34 6.14 -19.60 -0.12 -1.46 16 10 C -0.15 -3.32 10.02 22.35 0.22 -3.10 16 11 C 0.08 1.90 7.30 22.35 0.16 2.06 16 12 F -0.15 -3.49 17.27 44.97 0.78 -2.71 16 13 C -0.16 -3.38 10.03 22.29 0.22 -3.15 16 14 C -0.08 -1.61 10.04 22.30 0.22 -1.39 16 15 C -0.10 -2.18 4.87 -19.58 -0.10 -2.27 16 16 C 0.13 4.22 4.10 45.52 0.19 4.40 16 17 C -0.16 -5.18 7.38 31.18 0.23 -4.95 16 18 C 0.15 5.70 4.57 45.57 0.21 5.91 16 19 N -0.73 -37.17 5.31 -320.19 -1.70 -38.87 16 20 C -0.24 -13.51 9.97 84.03 0.84 -12.67 16 21 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 23 N -0.97 -61.70 13.06 21.65 0.28 -61.42 16 24 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 C -0.15 -4.48 7.38 31.12 0.23 -4.25 16 29 H 0.07 0.73 8.08 -2.38 -0.02 0.71 16 30 H 0.09 0.91 6.52 -2.39 -0.02 0.89 16 31 H 0.11 0.60 5.93 -2.39 -0.01 0.59 16 32 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 1.05 7.89 -2.39 -0.02 1.03 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 39 H 0.07 2.87 7.20 -2.39 -0.02 2.86 16 40 H 0.12 2.69 6.86 -2.39 -0.02 2.68 16 41 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 43 H 0.37 21.09 7.90 -92.71 -0.73 20.36 16 44 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.12 2.67 6.77 -2.38 -0.02 2.65 16 Total: -1.00 -79.30 376.25 3.93 -75.36 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.28 Total: 31.33 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.85 Total: -11.95 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -3.94 Total: -117.23 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -79.30 3.93 -75.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999125963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.019 kcal (2) G-P(sol) polarization free energy of solvation -79.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds