Wall clock time and date at job start Tue Mar 31 2020 16:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00151 * 2 1 4 4 O 1.21278 * 119.99877 * 185.31354 * 3 2 1 5 5 C 1.50697 * 120.00076 * 5.31358 * 3 2 1 6 6 C 1.50700 * 115.55334 * 67.05529 * 5 3 2 7 7 C 1.38272 * 119.98268 * 29.63329 * 6 5 3 8 8 C 1.38220 * 120.04941 * 179.72808 * 7 6 5 9 9 C 1.38211 * 120.02619 * 0.29290 * 8 7 6 10 10 C 1.38444 * 119.97570 * 359.97438 * 9 8 7 11 11 F 1.35101 * 120.02360 * 180.02562 * 10 9 8 12 12 C 1.38171 * 119.98982 * 209.90533 * 6 5 3 13 13 C 1.53002 * 117.51955 * 212.76101 * 5 3 2 14 14 C 1.52998 * 60.00284 * 107.47941 * 13 5 3 15 15 C 1.46507 * 119.99873 * 180.02562 * 2 1 3 16 16 C 1.53786 * 113.61305 * 39.13117 * 15 2 1 17 17 C 1.53958 * 87.01760 * 220.05124 * 16 15 2 18 18 N 1.46493 * 113.74280 * 139.94597 * 17 16 15 19 19 C 1.36940 * 120.00182 * 107.39908 * 18 17 16 20 20 H 1.08005 * 119.99395 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00567 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99687 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00435 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47205 * 90.00126 * 23 21 19 25 25 H 1.48499 * 109.47438 * 209.99717 * 23 21 19 26 26 H 1.48505 * 109.47161 * 330.00178 * 23 21 19 27 27 C 1.53777 * 87.11256 * 25.36095 * 17 16 15 28 28 H 1.08997 * 109.47553 * 84.66839 * 1 2 3 29 29 H 1.09006 * 109.47154 * 204.67071 * 1 2 3 30 30 H 1.09001 * 109.46977 * 324.66441 * 1 2 3 31 31 H 1.08002 * 119.97521 * 359.97438 * 7 6 5 32 32 H 1.08003 * 119.98403 * 180.27206 * 8 7 6 33 33 H 1.08008 * 120.01341 * 179.97438 * 9 8 7 34 34 H 1.07994 * 120.01616 * 359.97438 * 12 6 5 35 35 H 1.08999 * 117.49680 * 214.97117 * 13 5 3 36 36 H 1.09007 * 117.49649 * 359.97438 * 13 5 3 37 37 H 1.09003 * 117.49862 * 252.51400 * 14 13 5 38 38 H 1.09001 * 117.50034 * 107.48533 * 14 13 5 39 39 H 1.08998 * 112.84929 * 170.32749 * 15 2 1 40 40 H 1.09001 * 113.61131 * 334.57017 * 16 15 2 41 41 H 1.09003 * 113.61237 * 105.47370 * 16 15 2 42 42 H 1.09003 * 113.53371 * 270.81537 * 17 16 15 43 43 H 0.96993 * 120.00172 * 287.40123 * 18 17 16 44 44 H 0.96999 * 119.99898 * 180.02562 * 22 21 19 45 45 H 1.08993 * 113.61773 * 220.08880 * 27 17 16 46 46 H 1.09013 * 113.68768 * 89.19620 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3478 1.1693 -0.0973 5 6 1.3903 2.4694 0.1209 6 6 0.7098 2.7077 1.4442 7 6 1.2360 2.1609 2.6001 8 6 0.6160 2.3832 3.8153 9 6 -0.5340 3.1473 3.8755 10 6 -1.0649 3.6907 2.7181 11 9 -2.1888 4.4382 2.7759 12 6 -0.4428 3.4676 1.5012 13 6 1.9664 3.6861 -0.6064 14 6 0.7011 3.0073 -1.1348 15 6 2.1975 -1.2688 -0.0006 16 6 1.5589 -2.3484 -0.8903 17 6 1.9073 -3.3559 0.2205 18 7 0.8612 -4.3526 0.4620 19 6 1.0448 -5.6489 0.0607 20 1 1.9607 -5.9363 -0.4343 21 6 0.0540 -6.5935 0.2900 22 7 -1.0624 -6.2431 0.8929 23 14 0.3047 -8.3619 -0.2567 24 1 0.9461 -9.1326 0.8387 25 1 -1.0097 -8.9696 -0.5855 26 1 1.1773 -8.3896 -1.4581 27 6 1.8675 -2.1712 1.2001 28 1 -0.3634 0.0955 -1.0232 29 1 -0.3634 -0.9339 0.4290 30 1 -0.3633 0.8384 0.5944 31 1 2.1342 1.5631 2.5539 32 1 1.0304 1.9593 4.7181 33 1 -1.0185 3.3205 4.8252 34 1 -0.8558 3.8912 0.5977 35 1 1.8532 4.6587 -0.1276 36 1 2.8873 3.5448 -1.1722 37 1 0.7895 2.4193 -2.0484 38 1 -0.2445 3.5334 -1.0037 39 1 3.2667 -1.1402 -0.1693 40 1 0.4873 -2.2146 -1.0381 41 1 2.0975 -2.5209 -1.8222 42 1 2.8972 -3.7990 0.1113 43 1 0.0386 -4.0944 0.9062 44 1 -1.7547 -6.9033 1.0535 45 1 2.6546 -2.2008 1.9534 46 1 0.8808 -1.9879 1.6258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999499616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:55 Heat of formation + Delta-G solvation = 14.108807 kcal Electronic energy + Delta-G solvation = -28512.355935 eV Core-core repulsion = 24511.624184 eV Total energy + Delta-G solvation = -4000.731751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.16533 -40.98311 -39.31049 -38.13799 -36.47464 -34.76391 -33.06114 -31.10095 -30.81808 -29.98903 -26.98687 -25.85048 -25.13677 -24.24886 -23.22268 -23.01090 -22.34725 -21.23252 -19.21931 -18.82693 -18.00354 -17.12203 -16.87433 -16.58019 -16.38460 -16.12005 -15.86571 -15.51118 -14.94092 -14.62245 -14.53582 -14.32521 -14.05132 -13.50079 -13.21433 -13.08977 -13.03916 -12.77008 -12.72882 -12.15109 -12.07876 -12.06916 -11.97710 -11.81840 -11.50162 -11.28079 -11.03840 -10.94260 -10.87810 -10.56959 -10.47892 -10.29563 -10.01943 -9.77949 -9.57915 -9.22985 -8.92823 -8.88833 -8.46276 -7.01814 -5.82897 -3.11920 0.79238 0.87119 2.44801 2.92496 3.11164 3.40512 3.46220 3.47489 3.61062 3.86118 4.12234 4.26612 4.37382 4.55662 4.56922 4.62550 4.80096 4.83951 5.03263 5.08194 5.11684 5.22022 5.23225 5.28452 5.36357 5.42457 5.53098 5.56794 5.57790 5.71265 5.76021 5.79324 5.80974 5.83126 5.94064 6.00388 6.11457 6.14524 6.25980 6.30186 6.42049 6.53401 6.55044 6.76493 7.00230 7.47495 7.66190 8.14638 8.35535 9.46968 10.03316 10.37928 11.39427 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.002789 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.746349 B =10038.034206 C =11001.488815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.587 5.587 3 C 0.552 3.448 4 O -0.539 6.539 5 C -0.123 4.123 6 C -0.009 4.009 7 C -0.116 4.116 8 C -0.081 4.081 9 C -0.156 4.156 10 C 0.102 3.898 11 F -0.140 7.140 12 C -0.154 4.154 13 C -0.132 4.132 14 C -0.156 4.156 15 C 0.115 3.885 16 C -0.174 4.174 17 C 0.170 3.830 18 N -0.709 5.709 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.162 4.162 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 23.420 1.532 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.318 5.318 3 C 0.339 3.661 4 O -0.417 6.417 5 C -0.126 4.126 6 C -0.009 4.009 7 C -0.134 4.134 8 C -0.099 4.099 9 C -0.175 4.175 10 C 0.083 3.917 11 F -0.118 7.118 12 C -0.173 4.173 13 C -0.169 4.169 14 C -0.193 4.193 15 C 0.012 3.988 16 C -0.216 4.216 17 C 0.057 3.943 18 N -0.347 5.347 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.202 4.202 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.104 23.211 1.422 23.350 hybrid contribution -0.634 -0.806 -0.064 1.028 sum 1.470 22.405 1.358 22.494 Atomic orbital electron populations 1.21844 0.79380 1.03732 1.01866 1.47759 1.07058 1.05495 1.71462 1.19231 0.86922 0.83777 0.76165 1.90685 1.13866 1.87028 1.50072 1.20119 1.04976 0.95200 0.92317 1.18503 0.93530 0.96403 0.92466 1.21107 1.00573 1.00027 0.91728 1.21020 0.94202 0.96498 0.98203 1.21194 0.98121 1.00379 0.97760 1.17587 0.84792 0.94792 0.94513 1.91509 1.49003 1.74075 1.97225 1.20942 0.96772 1.02373 0.97201 1.23098 0.98188 0.94621 1.01009 1.23226 0.97589 1.02903 0.95580 1.22663 0.97251 0.80187 0.98734 1.24354 1.01112 0.96714 0.99463 1.21360 0.93761 0.87238 0.91920 1.42346 1.17168 1.05591 1.69604 1.19309 1.01266 0.85517 1.31478 0.91005 1.24758 0.96502 0.98301 1.01227 1.69657 1.07304 1.33685 1.47396 0.86186 0.76819 0.84937 0.78221 1.21659 1.21756 1.20692 1.23928 1.01836 0.97178 0.97271 0.92509 0.89920 0.91237 0.85327 0.84614 0.84613 0.84391 0.87681 0.87234 0.87633 0.87387 0.86813 0.89873 0.92138 0.90283 0.78113 0.93437 0.91756 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 8.74 59.85 0.52 1.40 16 2 N -0.59 -7.86 3.08 -173.00 -0.53 -8.39 16 3 C 0.55 7.54 5.74 -10.99 -0.06 7.47 16 4 O -0.54 -9.10 16.21 5.56 0.09 -9.01 16 5 C -0.12 -1.28 1.36 -156.81 -0.21 -1.49 16 6 C -0.01 -0.09 3.62 -104.63 -0.38 -0.46 16 7 C -0.12 -1.21 9.32 -39.58 -0.37 -1.57 16 8 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 9 C -0.16 -1.37 10.03 -39.52 -0.40 -1.77 16 10 C 0.10 0.99 7.30 -39.42 -0.29 0.70 16 11 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 12 C -0.15 -1.39 9.29 -39.52 -0.37 -1.76 16 13 C -0.13 -1.16 9.73 -26.73 -0.26 -1.42 16 14 C -0.16 -1.25 9.36 -26.73 -0.25 -1.50 16 15 C 0.11 1.73 4.22 -67.11 -0.28 1.44 16 16 C -0.17 -2.91 7.31 -25.82 -0.19 -3.10 16 17 C 0.17 3.25 4.48 -67.03 -0.30 2.95 16 18 N -0.71 -17.18 5.41 -52.55 -0.28 -17.46 16 19 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.16 -2.61 7.34 -25.92 -0.19 -2.80 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.06 6.13 -51.93 -0.32 0.74 16 30 H 0.07 0.73 5.44 -51.93 -0.28 0.45 16 31 H 0.13 1.47 7.33 -52.49 -0.38 1.08 16 32 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.14 1.01 5.95 -52.49 -0.31 0.70 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.11 1.05 8.03 -51.93 -0.42 0.64 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.11 0.67 6.10 -51.93 -0.32 0.35 16 39 H 0.11 1.80 7.20 -51.93 -0.37 1.43 16 40 H 0.08 1.43 6.69 -51.93 -0.35 1.09 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 43 H 0.38 9.84 7.93 -40.82 -0.32 9.52 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.34 6.87 -51.92 -0.36 0.98 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -31.19 378.00 -9.32 -40.51 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.36 Total: 10.10 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.67 Total: -10.25 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.09 Total: -52.65 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.19 -9.32 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999499616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.616 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds