Wall clock time and date at job start Tue Mar 31 2020 16:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00151 * 2 1 4 4 O 1.21278 * 119.99877 * 185.31354 * 3 2 1 5 5 C 1.50697 * 120.00076 * 5.31358 * 3 2 1 6 6 C 1.50700 * 115.55334 * 67.05529 * 5 3 2 7 7 C 1.38272 * 119.98268 * 29.63329 * 6 5 3 8 8 C 1.38220 * 120.04941 * 179.72808 * 7 6 5 9 9 C 1.38211 * 120.02619 * 0.29290 * 8 7 6 10 10 C 1.38444 * 119.97570 * 359.97438 * 9 8 7 11 11 F 1.35101 * 120.02360 * 180.02562 * 10 9 8 12 12 C 1.38171 * 119.98982 * 209.90533 * 6 5 3 13 13 C 1.53002 * 117.51955 * 212.76101 * 5 3 2 14 14 C 1.52998 * 60.00284 * 107.47941 * 13 5 3 15 15 C 1.46507 * 119.99873 * 180.02562 * 2 1 3 16 16 C 1.53786 * 113.61305 * 39.13117 * 15 2 1 17 17 C 1.53958 * 87.01760 * 220.05124 * 16 15 2 18 18 N 1.46493 * 113.74280 * 139.94597 * 17 16 15 19 19 C 1.36940 * 120.00182 * 107.39908 * 18 17 16 20 20 H 1.08005 * 119.99395 * 359.97438 * 19 18 17 21 21 C 1.38804 * 120.00567 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99687 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 120.00435 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47205 * 90.00126 * 23 21 19 25 25 H 1.48499 * 109.47438 * 209.99717 * 23 21 19 26 26 H 1.48505 * 109.47161 * 330.00178 * 23 21 19 27 27 C 1.53777 * 87.11256 * 25.36095 * 17 16 15 28 28 H 1.08997 * 109.47553 * 84.66839 * 1 2 3 29 29 H 1.09006 * 109.47154 * 204.67071 * 1 2 3 30 30 H 1.09001 * 109.46977 * 324.66441 * 1 2 3 31 31 H 1.08002 * 119.97521 * 359.97438 * 7 6 5 32 32 H 1.08003 * 119.98403 * 180.27206 * 8 7 6 33 33 H 1.08008 * 120.01341 * 179.97438 * 9 8 7 34 34 H 1.07994 * 120.01616 * 359.97438 * 12 6 5 35 35 H 1.08999 * 117.49680 * 214.97117 * 13 5 3 36 36 H 1.09007 * 117.49649 * 359.97438 * 13 5 3 37 37 H 1.09003 * 117.49862 * 252.51400 * 14 13 5 38 38 H 1.09001 * 117.50034 * 107.48533 * 14 13 5 39 39 H 1.08998 * 112.84929 * 170.32749 * 15 2 1 40 40 H 1.09001 * 113.61131 * 334.57017 * 16 15 2 41 41 H 1.09003 * 113.61237 * 105.47370 * 16 15 2 42 42 H 1.09003 * 113.53371 * 270.81537 * 17 16 15 43 43 H 0.96993 * 120.00172 * 287.40123 * 18 17 16 44 44 H 0.96999 * 119.99898 * 180.02562 * 22 21 19 45 45 H 1.08993 * 113.61773 * 220.08880 * 27 17 16 46 46 H 1.09013 * 113.68768 * 89.19620 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3478 1.1693 -0.0973 5 6 1.3903 2.4694 0.1209 6 6 0.7098 2.7077 1.4442 7 6 1.2360 2.1609 2.6001 8 6 0.6160 2.3832 3.8153 9 6 -0.5340 3.1473 3.8755 10 6 -1.0649 3.6907 2.7181 11 9 -2.1888 4.4382 2.7759 12 6 -0.4428 3.4676 1.5012 13 6 1.9664 3.6861 -0.6064 14 6 0.7011 3.0073 -1.1348 15 6 2.1975 -1.2688 -0.0006 16 6 1.5589 -2.3484 -0.8903 17 6 1.9073 -3.3559 0.2205 18 7 0.8612 -4.3526 0.4620 19 6 1.0448 -5.6489 0.0607 20 1 1.9607 -5.9363 -0.4343 21 6 0.0540 -6.5935 0.2900 22 7 -1.0624 -6.2431 0.8929 23 14 0.3047 -8.3619 -0.2567 24 1 0.9461 -9.1326 0.8387 25 1 -1.0097 -8.9696 -0.5855 26 1 1.1773 -8.3896 -1.4581 27 6 1.8675 -2.1712 1.2001 28 1 -0.3634 0.0955 -1.0232 29 1 -0.3634 -0.9339 0.4290 30 1 -0.3633 0.8384 0.5944 31 1 2.1342 1.5631 2.5539 32 1 1.0304 1.9593 4.7181 33 1 -1.0185 3.3205 4.8252 34 1 -0.8558 3.8912 0.5977 35 1 1.8532 4.6587 -0.1276 36 1 2.8873 3.5448 -1.1722 37 1 0.7895 2.4193 -2.0484 38 1 -0.2445 3.5334 -1.0037 39 1 3.2667 -1.1402 -0.1693 40 1 0.4873 -2.2146 -1.0381 41 1 2.0975 -2.5209 -1.8222 42 1 2.8972 -3.7990 0.1113 43 1 0.0386 -4.0944 0.9062 44 1 -1.7547 -6.9033 1.0535 45 1 2.6546 -2.2008 1.9534 46 1 0.8808 -1.9879 1.6258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999499616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:54 Heat of formation + Delta-G solvation = -2.496769 kcal Electronic energy + Delta-G solvation = -28513.076007 eV Core-core repulsion = 24511.624184 eV Total energy + Delta-G solvation = -4001.451823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.90594 -41.93980 -40.36119 -39.27105 -37.33216 -36.19779 -34.78734 -31.95988 -31.77976 -31.49124 -28.04994 -27.04977 -26.50609 -25.79556 -24.21203 -23.89021 -23.06580 -22.40203 -20.46034 -20.00577 -19.04594 -18.87930 -17.94804 -17.50243 -17.14110 -17.01036 -16.62315 -16.50193 -16.39384 -16.04076 -15.70794 -15.35269 -15.02593 -14.93368 -14.46391 -14.22815 -14.07536 -13.75342 -13.67395 -13.47721 -13.28146 -13.13638 -13.03894 -12.85803 -12.78919 -12.62654 -12.25095 -12.17238 -12.14605 -12.02566 -11.78231 -11.65469 -11.59797 -11.38481 -10.88785 -10.78723 -9.92831 -9.63447 -9.62017 -8.99202 -7.94837 -5.23062 0.07648 0.17213 1.41284 1.48747 1.49404 1.57843 1.88795 2.39184 2.57071 2.87874 3.12015 3.35571 3.36901 3.44286 3.66752 3.73472 3.79283 3.88746 3.93172 3.96891 4.08251 4.12497 4.18921 4.27209 4.30064 4.36660 4.52528 4.61170 4.66961 4.72391 4.79779 4.86555 4.89393 4.91098 4.93388 5.01039 5.07273 5.09118 5.12762 5.15850 5.29258 5.41650 5.43573 5.51592 5.63937 5.85301 6.27199 6.37902 7.06441 7.34088 8.08748 8.32769 9.28198 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.002789 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.746349 B =10038.034206 C =11001.488815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.587 5.587 3 C 0.552 3.448 4 O -0.577 6.577 5 C -0.137 4.137 6 C -0.011 4.011 7 C -0.132 4.132 8 C -0.082 4.082 9 C -0.156 4.156 10 C 0.092 3.908 11 F -0.144 7.144 12 C -0.149 4.149 13 C -0.130 4.130 14 C -0.137 4.137 15 C 0.130 3.870 16 C -0.161 4.161 17 C 0.153 3.847 18 N -0.722 5.722 19 C -0.244 4.244 20 H 0.076 0.924 21 C -0.072 4.072 22 N -0.968 5.968 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.270 1.270 27 C -0.148 4.148 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.070 0.930 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 24.900 1.110 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.316 5.316 3 C 0.341 3.659 4 O -0.457 6.457 5 C -0.140 4.140 6 C -0.012 4.012 7 C -0.151 4.151 8 C -0.100 4.100 9 C -0.175 4.175 10 C 0.072 3.928 11 F -0.123 7.123 12 C -0.167 4.167 13 C -0.167 4.167 14 C -0.174 4.174 15 C 0.026 3.974 16 C -0.203 4.203 17 C 0.043 3.957 18 N -0.359 5.359 19 C -0.376 4.376 20 H 0.094 0.906 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.799 3.201 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.195 1.195 27 C -0.188 4.188 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.775 24.730 0.982 24.813 hybrid contribution -0.452 -1.192 0.082 1.277 sum 1.323 23.538 1.064 23.600 Atomic orbital electron populations 1.21930 0.78110 1.03667 1.02943 1.47755 1.07737 1.04905 1.71248 1.19760 0.86613 0.84690 0.74882 1.90662 1.15642 1.87659 1.51737 1.20001 1.06333 0.93914 0.93746 1.18449 0.93898 0.96911 0.91941 1.21119 1.00492 1.00668 0.92779 1.21199 0.94141 0.96311 0.98331 1.21421 0.97868 0.99713 0.98452 1.17763 0.84848 0.95067 0.95081 1.91500 1.49264 1.74240 1.97270 1.21053 0.96041 1.01767 0.97836 1.23176 0.98256 0.94726 1.00554 1.23373 0.98255 1.01732 0.94011 1.22310 0.97019 0.80863 0.97174 1.24121 1.01059 0.96161 0.98934 1.21647 0.92474 0.87289 0.94308 1.42476 1.17922 1.05714 1.69836 1.19682 1.01009 0.86802 1.30137 0.90600 1.25511 0.96586 1.02067 1.02313 1.69801 1.08128 1.34554 1.49314 0.85193 0.76441 0.80420 0.78026 1.21543 1.22262 1.19524 1.23752 1.02046 0.95683 0.97296 0.91105 0.91202 0.89778 0.87015 0.83010 0.82899 0.82419 0.85914 0.88434 0.87671 0.84852 0.87317 0.90198 0.91811 0.90435 0.79251 0.94014 0.91106 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 8.74 127.77 1.12 2.78 16 2 N -0.59 -15.19 3.08 -819.63 -2.53 -17.72 16 3 C 0.55 14.65 5.74 87.66 0.50 15.15 16 4 O -0.58 -19.49 16.21 -3.02 -0.05 -19.54 16 5 C -0.14 -2.61 1.36 -53.67 -0.07 -2.69 16 6 C -0.01 -0.21 3.62 -19.87 -0.07 -0.28 16 7 C -0.13 -2.63 9.32 22.27 0.21 -2.42 16 8 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 9 C -0.16 -2.43 10.03 22.31 0.22 -2.21 16 10 C 0.09 1.56 7.30 22.38 0.16 1.72 16 11 F -0.14 -2.66 17.27 44.97 0.78 -1.88 16 12 C -0.15 -2.30 9.29 22.31 0.21 -2.09 16 13 C -0.13 -2.03 9.73 30.59 0.30 -1.73 16 14 C -0.14 -1.81 9.36 30.60 0.29 -1.52 16 15 C 0.13 3.86 4.22 45.52 0.19 4.06 16 16 C -0.16 -5.30 7.31 31.18 0.23 -5.07 16 17 C 0.15 5.86 4.48 45.58 0.20 6.06 16 18 N -0.72 -35.26 5.41 -320.18 -1.73 -36.99 16 19 C -0.24 -13.29 9.97 84.03 0.84 -12.45 16 20 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 22 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 23 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 27 C -0.15 -4.73 7.34 31.12 0.23 -4.50 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.74 6.13 -2.38 -0.01 1.72 16 30 H 0.08 1.61 5.44 -2.39 -0.01 1.60 16 31 H 0.11 2.57 7.33 -2.91 -0.02 2.55 16 32 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.16 1.72 5.95 -2.91 -0.02 1.70 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.78 8.03 -2.38 -0.02 1.76 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.13 1.09 6.10 -2.39 -0.01 1.07 16 39 H 0.11 3.41 7.20 -2.39 -0.02 3.39 16 40 H 0.08 2.71 6.69 -2.39 -0.02 2.69 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.97 8.10 -2.39 -0.02 2.95 16 43 H 0.38 19.53 7.93 -92.71 -0.73 18.80 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.08 2.62 6.87 -2.38 -0.02 2.61 16 Total: -1.00 -67.07 378.00 4.30 -62.77 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.28 Total: 33.43 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 5.24 Total: -9.92 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -3.98 Total: -112.36 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.54 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.07 4.30 -62.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999499616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.275 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds