Wall clock time and date at job start Tue Mar 31 2020 16:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34786 * 120.00276 * 2 1 4 4 O 1.21279 * 120.00272 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99545 * 359.97438 * 3 2 1 6 6 H 1.09000 * 112.88907 * 51.67033 * 5 3 2 7 7 C 1.52256 * 113.48445 * 182.88625 * 5 3 2 8 8 C 1.50571 * 87.23425 * 114.40861 * 7 5 3 9 9 C 1.38824 * 147.26767 * 180.21547 * 8 7 5 10 10 C 1.38023 * 120.12454 * 179.97438 * 9 8 7 11 11 C 1.38452 * 119.95736 * 0.02562 * 10 9 8 12 12 F 1.35099 * 120.03889 * 179.97438 * 11 10 9 13 13 C 1.38298 * 119.92640 * 359.97438 * 11 10 9 14 14 C 1.37733 * 92.76286 * 0.18355 * 8 7 5 15 15 C 1.46504 * 119.99961 * 179.97438 * 2 1 3 16 16 C 1.53041 * 109.45796 * 60.02840 * 15 2 1 17 17 C 1.53188 * 109.31036 * 178.59945 * 16 15 2 18 18 N 1.46925 * 108.76681 * 54.65497 * 17 16 15 19 19 C 1.36941 * 120.63233 * 126.36054 * 18 17 16 20 20 H 1.07999 * 119.99492 * 331.84249 * 19 18 17 21 21 C 1.38810 * 119.99941 * 151.84524 * 19 18 17 22 22 N 1.31623 * 120.00298 * 343.07972 * 21 19 18 23 23 Si 1.86808 * 119.99789 * 163.07680 * 21 19 18 24 24 H 1.48499 * 109.46919 * 60.00293 * 23 21 19 25 25 H 1.48505 * 109.46858 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47203 * 300.00434 * 23 21 19 27 27 C 1.46931 * 118.73955 * 306.38615 * 18 17 16 28 28 C 1.53039 * 109.45986 * 299.97357 * 15 2 1 29 29 H 1.08996 * 109.46712 * 89.99903 * 1 2 3 30 30 H 1.08997 * 109.47263 * 210.00180 * 1 2 3 31 31 H 1.08997 * 109.47001 * 330.00252 * 1 2 3 32 32 H 1.09004 * 113.42421 * 359.84260 * 7 5 3 33 33 H 1.09003 * 113.83333 * 229.02635 * 7 5 3 34 34 H 1.08005 * 119.93835 * 359.97072 * 9 8 7 35 35 H 1.08003 * 120.02372 * 179.97438 * 10 9 8 36 36 H 1.07995 * 119.96594 * 179.97438 * 13 11 10 37 37 H 1.09006 * 109.45513 * 180.02562 * 15 2 1 38 38 H 1.08999 * 109.49512 * 298.56419 * 16 15 2 39 39 H 1.08997 * 109.49636 * 58.66279 * 16 15 2 40 40 H 1.09000 * 109.60061 * 294.86861 * 17 16 15 41 41 H 1.08993 * 109.70561 * 174.50517 * 17 16 15 42 42 H 0.97003 * 119.99918 * 179.97438 * 22 21 19 43 43 H 1.09002 * 109.58536 * 293.81702 * 27 18 17 44 44 H 1.08997 * 109.58979 * 173.39296 * 27 18 17 45 45 H 1.09003 * 109.49701 * 301.33190 * 28 15 2 46 46 H 1.08994 * 109.49763 * 61.40145 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.6339 2.5282 0.7868 7 6 2.2899 3.6951 -0.0708 8 6 1.6883 3.9719 -1.4231 9 6 1.6557 4.7953 -2.5403 10 6 0.8013 4.5102 -3.5862 11 6 -0.0252 3.4014 -3.5211 12 9 -0.8625 3.1211 -4.5437 13 6 0.0071 2.5810 -2.4082 14 6 0.8671 2.8682 -1.3576 15 6 2.1975 -1.2688 0.0006 16 6 1.8281 -2.0713 -1.2491 17 6 2.6220 -3.3813 -1.2629 18 7 2.3850 -4.0910 0.0016 19 6 1.9511 -5.3898 0.0021 20 1 1.3613 -5.7623 -0.8224 21 6 2.2693 -6.2275 1.0622 22 7 3.2409 -5.9030 1.8887 23 14 1.3186 -7.8154 1.3158 24 1 1.4699 -8.6797 0.1178 25 1 1.8491 -8.5250 2.5077 26 1 -0.1185 -7.5041 1.5234 27 6 2.6217 -3.3804 1.2657 28 6 1.8281 -2.0702 1.2509 29 1 -0.3632 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.3509 3.4478 -0.1077 33 1 2.0589 4.4571 0.6735 34 1 2.3000 5.6606 -2.5912 35 1 0.7770 5.1521 -4.4544 36 1 -0.6376 1.7162 -2.3566 37 1 3.2692 -1.0693 0.0009 38 1 0.7609 -2.2925 -1.2371 39 1 2.0698 -1.4903 -2.1391 40 1 3.6850 -3.1636 -1.3659 41 1 2.2935 -4.0013 -2.0969 42 1 3.4631 -6.4882 2.6297 43 1 3.6848 -3.1626 1.3688 44 1 2.2907 -3.9987 2.1000 45 1 2.0698 -1.4885 2.1405 46 1 0.7608 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005886949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:32 Heat of formation + Delta-G solvation = 11.377850 kcal Electronic energy + Delta-G solvation = -28709.423654 eV Core-core repulsion = 24708.573479 eV Total energy + Delta-G solvation = -4000.850174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.15502 -41.46007 -39.38606 -37.45286 -35.34979 -35.14174 -32.50500 -31.17327 -30.27617 -29.67096 -27.84428 -26.92145 -25.89048 -24.59999 -22.96302 -22.21342 -21.90681 -20.91155 -19.24794 -18.82743 -17.74921 -17.31955 -16.91037 -16.69061 -16.11114 -15.79409 -15.45215 -15.25680 -14.86239 -14.41000 -14.26290 -13.89674 -13.71660 -13.61080 -13.33344 -13.07374 -12.88264 -12.76470 -12.59343 -12.40533 -12.38376 -12.05557 -11.88450 -11.56165 -11.48990 -11.13111 -10.96466 -10.82526 -10.73251 -10.36963 -10.24545 -10.11577 -9.95230 -9.73883 -9.58750 -9.20944 -8.75894 -8.56306 -8.33916 -6.70169 -5.80576 -3.23440 0.76932 0.85220 2.53510 3.01947 3.24695 3.37298 3.43112 3.43982 3.62507 3.92922 4.13850 4.22096 4.47998 4.49368 4.60642 4.81666 4.98326 5.13787 5.16946 5.26943 5.32377 5.37902 5.40836 5.44621 5.48823 5.59417 5.64397 5.68388 5.75041 5.80131 5.85077 5.86530 6.05961 6.19299 6.29107 6.31657 6.47085 6.53032 6.54793 6.60400 6.75620 6.86092 6.94636 7.31666 7.48743 7.63708 7.77673 8.20464 8.43237 9.19236 9.82337 10.39400 11.28187 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.002703 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.387170 B =10357.252609 C =11073.105528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.527 3.473 4 O -0.535 6.535 5 C -0.067 4.067 6 H 0.124 0.876 7 C -0.058 4.058 8 C -0.125 4.125 9 C -0.068 4.068 10 C -0.146 4.146 11 C 0.098 3.902 12 F -0.137 7.137 13 C -0.120 4.120 14 C -0.092 4.092 15 C 0.144 3.856 16 C -0.137 4.137 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.174 3.826 28 C -0.145 4.145 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.255 0.745 43 H 0.021 0.979 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 22.482 -5.316 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.333 5.333 3 C 0.314 3.686 4 O -0.412 6.412 5 C -0.088 4.088 6 H 0.142 0.858 7 C -0.095 4.095 8 C -0.125 4.125 9 C -0.086 4.086 10 C -0.165 4.165 11 C 0.078 3.922 12 F -0.116 7.116 13 C -0.139 4.139 14 C -0.093 4.093 15 C 0.043 3.957 16 C -0.177 4.177 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.048 3.952 28 C -0.185 4.185 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.635 22.328 -5.229 23.872 hybrid contribution -0.917 -0.933 -0.133 1.315 sum -7.552 21.395 -5.362 23.313 Atomic orbital electron populations 1.21814 0.80080 1.03256 1.01711 1.48109 1.06966 1.06285 1.71907 1.19912 0.87687 0.84592 0.76452 1.90692 1.13571 1.86851 1.50105 1.21221 0.98255 0.94427 0.94851 0.85806 1.21464 1.01566 0.94631 0.91850 1.21916 0.98140 0.95879 0.96613 1.20238 0.97949 0.99203 0.91214 1.21004 0.97446 0.97551 1.00450 1.17320 0.92559 0.96466 0.85818 1.91516 1.69366 1.93469 1.57227 1.20355 1.00906 1.00590 0.92070 1.21132 0.96160 0.96984 0.95027 1.21239 0.97271 0.80776 0.96427 1.22351 1.01378 0.98009 0.95952 1.20862 0.95811 0.90916 0.90350 1.44084 1.77791 1.10205 0.99400 1.19139 1.25993 0.86600 1.06667 0.91697 1.25059 0.96878 0.97680 0.99952 1.70022 1.28122 1.38370 1.18141 0.86366 0.79727 0.83270 0.77373 1.20874 1.21622 1.21044 1.20755 0.95306 0.88623 0.90534 1.22570 1.01618 0.99015 0.95341 0.92790 0.90132 0.91495 0.86860 0.88185 0.85031 0.84266 0.84811 0.88639 0.92095 0.93055 0.96228 0.92454 0.93515 0.96134 0.89126 0.93016 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.19 59.85 0.55 1.36 16 2 N -0.60 -8.59 2.76 -173.88 -0.48 -9.07 16 3 C 0.53 7.61 7.20 -10.98 -0.08 7.53 16 4 O -0.54 -9.70 15.00 5.56 0.08 -9.62 16 5 C -0.07 -0.68 3.07 -93.66 -0.29 -0.97 16 6 H 0.12 0.96 7.09 -51.93 -0.37 0.59 16 7 C -0.06 -0.54 7.69 -28.62 -0.22 -0.76 16 8 C -0.13 -1.24 7.42 -104.94 -0.78 -2.02 16 9 C -0.07 -0.58 10.06 -39.44 -0.40 -0.98 16 10 C -0.15 -1.28 10.02 -39.58 -0.40 -1.68 16 11 C 0.10 1.01 7.30 -39.48 -0.29 0.73 16 12 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 13 C -0.12 -1.26 10.04 -39.36 -0.40 -1.65 16 14 C -0.09 -0.97 6.71 -104.97 -0.70 -1.68 16 15 C 0.14 2.53 2.48 -67.89 -0.17 2.36 16 16 C -0.14 -2.41 5.34 -26.61 -0.14 -2.55 16 17 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 18 N -0.59 -14.69 2.99 -172.32 -0.52 -15.21 16 19 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 20 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 22 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 23 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 28 C -0.15 -2.73 5.31 -26.61 -0.14 -2.87 16 29 H 0.05 0.54 7.34 -51.93 -0.38 0.16 16 30 H 0.08 0.92 6.46 -51.93 -0.34 0.58 16 31 H 0.07 0.55 6.29 -51.93 -0.33 0.22 16 32 H 0.11 1.23 6.99 -51.93 -0.36 0.87 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.13 1.25 7.26 -52.49 -0.38 0.87 16 37 H 0.10 1.92 6.90 -51.93 -0.36 1.56 16 38 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -31.70 368.06 -9.96 -41.65 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.50 Total: 0.19 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -3.72 Total: -3.02 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.37 Total: -49.71 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.70 -9.96 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005886949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.030 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds