Wall clock time and date at job start Tue Mar 31 2020 16:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34786 * 120.00276 * 2 1 4 4 O 1.21279 * 120.00272 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99545 * 359.97438 * 3 2 1 6 6 H 1.09000 * 112.88907 * 51.67033 * 5 3 2 7 7 C 1.52256 * 113.48445 * 182.88625 * 5 3 2 8 8 C 1.50571 * 87.23425 * 114.40861 * 7 5 3 9 9 C 1.38824 * 147.26767 * 180.21547 * 8 7 5 10 10 C 1.38023 * 120.12454 * 179.97438 * 9 8 7 11 11 C 1.38452 * 119.95736 * 0.02562 * 10 9 8 12 12 F 1.35099 * 120.03889 * 179.97438 * 11 10 9 13 13 C 1.38298 * 119.92640 * 359.97438 * 11 10 9 14 14 C 1.37733 * 92.76286 * 0.18355 * 8 7 5 15 15 C 1.46504 * 119.99961 * 179.97438 * 2 1 3 16 16 C 1.53041 * 109.45796 * 60.02840 * 15 2 1 17 17 C 1.53188 * 109.31036 * 178.59945 * 16 15 2 18 18 N 1.46925 * 108.76681 * 54.65497 * 17 16 15 19 19 C 1.36941 * 120.63233 * 126.36054 * 18 17 16 20 20 H 1.07999 * 119.99492 * 331.84249 * 19 18 17 21 21 C 1.38810 * 119.99941 * 151.84524 * 19 18 17 22 22 N 1.31623 * 120.00298 * 343.07972 * 21 19 18 23 23 Si 1.86808 * 119.99789 * 163.07680 * 21 19 18 24 24 H 1.48499 * 109.46919 * 60.00293 * 23 21 19 25 25 H 1.48505 * 109.46858 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47203 * 300.00434 * 23 21 19 27 27 C 1.46931 * 118.73955 * 306.38615 * 18 17 16 28 28 C 1.53039 * 109.45986 * 299.97357 * 15 2 1 29 29 H 1.08996 * 109.46712 * 89.99903 * 1 2 3 30 30 H 1.08997 * 109.47263 * 210.00180 * 1 2 3 31 31 H 1.08997 * 109.47001 * 330.00252 * 1 2 3 32 32 H 1.09004 * 113.42421 * 359.84260 * 7 5 3 33 33 H 1.09003 * 113.83333 * 229.02635 * 7 5 3 34 34 H 1.08005 * 119.93835 * 359.97072 * 9 8 7 35 35 H 1.08003 * 120.02372 * 179.97438 * 10 9 8 36 36 H 1.07995 * 119.96594 * 179.97438 * 13 11 10 37 37 H 1.09006 * 109.45513 * 180.02562 * 15 2 1 38 38 H 1.08999 * 109.49512 * 298.56419 * 16 15 2 39 39 H 1.08997 * 109.49636 * 58.66279 * 16 15 2 40 40 H 1.09000 * 109.60061 * 294.86861 * 17 16 15 41 41 H 1.08993 * 109.70561 * 174.50517 * 17 16 15 42 42 H 0.97003 * 119.99918 * 179.97438 * 22 21 19 43 43 H 1.09002 * 109.58536 * 293.81702 * 27 18 17 44 44 H 1.08997 * 109.58979 * 173.39296 * 27 18 17 45 45 H 1.09003 * 109.49701 * 301.33190 * 28 15 2 46 46 H 1.08994 * 109.49763 * 61.40145 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.6339 2.5282 0.7868 7 6 2.2899 3.6951 -0.0708 8 6 1.6883 3.9719 -1.4231 9 6 1.6557 4.7953 -2.5403 10 6 0.8013 4.5102 -3.5862 11 6 -0.0252 3.4014 -3.5211 12 9 -0.8625 3.1211 -4.5437 13 6 0.0071 2.5810 -2.4082 14 6 0.8671 2.8682 -1.3576 15 6 2.1975 -1.2688 0.0006 16 6 1.8281 -2.0713 -1.2491 17 6 2.6220 -3.3813 -1.2629 18 7 2.3850 -4.0910 0.0016 19 6 1.9511 -5.3898 0.0021 20 1 1.3613 -5.7623 -0.8224 21 6 2.2693 -6.2275 1.0622 22 7 3.2409 -5.9030 1.8887 23 14 1.3186 -7.8154 1.3158 24 1 1.4699 -8.6797 0.1178 25 1 1.8491 -8.5250 2.5077 26 1 -0.1185 -7.5041 1.5234 27 6 2.6217 -3.3804 1.2657 28 6 1.8281 -2.0702 1.2509 29 1 -0.3632 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.3509 3.4478 -0.1077 33 1 2.0589 4.4571 0.6735 34 1 2.3000 5.6606 -2.5912 35 1 0.7770 5.1521 -4.4544 36 1 -0.6376 1.7162 -2.3566 37 1 3.2692 -1.0693 0.0009 38 1 0.7609 -2.2925 -1.2371 39 1 2.0698 -1.4903 -2.1391 40 1 3.6850 -3.1636 -1.3659 41 1 2.2935 -4.0013 -2.0969 42 1 3.4631 -6.4882 2.6297 43 1 3.6848 -3.1626 1.3688 44 1 2.2907 -3.9987 2.1000 45 1 2.0698 -1.4885 2.1405 46 1 0.7608 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005886949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:31 Heat of formation + Delta-G solvation = -5.138534 kcal Electronic energy + Delta-G solvation = -28710.139858 eV Core-core repulsion = 24708.573479 eV Total energy + Delta-G solvation = -4001.566379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.93181 -42.31560 -40.51701 -38.93720 -36.64872 -36.08762 -34.28746 -32.11640 -31.77095 -31.40509 -28.67805 -27.98364 -27.17970 -25.95529 -24.02945 -23.90125 -23.13849 -21.85655 -20.70709 -19.99068 -18.83476 -18.50557 -18.21898 -17.63768 -17.31008 -16.77082 -16.58409 -16.32275 -16.15001 -15.74388 -15.41082 -15.21795 -15.01509 -14.82784 -14.63020 -14.38191 -14.16897 -13.93990 -13.83491 -13.54659 -13.34914 -13.18446 -13.01746 -12.79332 -12.65585 -12.58380 -12.55578 -12.27717 -12.09462 -12.02902 -11.92828 -11.66296 -11.49452 -11.36145 -10.97281 -10.57012 -9.96790 -9.63557 -9.50137 -8.73092 -7.88829 -5.35383 0.04858 0.15142 1.46983 1.48160 1.49884 1.57220 1.93122 2.51031 2.51200 2.85121 3.22710 3.27046 3.36765 3.51609 3.56972 3.64144 3.90254 3.95984 4.03128 4.10889 4.27628 4.30993 4.34348 4.43604 4.47984 4.61035 4.61691 4.64400 4.71895 4.81799 4.82906 4.93512 4.95138 5.01337 5.01748 5.05111 5.09818 5.11889 5.18535 5.26513 5.43405 5.54386 5.59380 5.62405 5.68140 5.84553 6.37099 6.39048 7.08790 7.12441 7.82024 8.35347 9.18221 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.002703 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.387170 B =10357.252609 C =11073.105528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.522 3.478 4 O -0.580 6.580 5 C -0.058 4.058 6 H 0.157 0.843 7 C -0.054 4.054 8 C -0.133 4.133 9 C -0.069 4.069 10 C -0.143 4.143 11 C 0.078 3.922 12 F -0.145 7.145 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.154 3.846 16 C -0.120 4.120 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.265 4.265 20 H 0.070 0.930 21 C -0.050 4.050 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.181 3.819 28 C -0.127 4.127 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.141 0.859 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.006 0.994 41 H 0.062 0.938 42 H 0.251 0.749 43 H -0.011 1.011 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.508 24.409 -5.886 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.331 5.331 3 C 0.310 3.690 4 O -0.460 6.460 5 C -0.078 4.078 6 H 0.174 0.826 7 C -0.091 4.091 8 C -0.133 4.133 9 C -0.087 4.087 10 C -0.161 4.161 11 C 0.059 3.941 12 F -0.124 7.124 13 C -0.147 4.147 14 C -0.107 4.107 15 C 0.051 3.949 16 C -0.159 4.159 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.395 4.395 20 H 0.088 0.912 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.798 3.202 24 H -0.202 1.202 25 H -0.222 1.222 26 H -0.200 1.200 27 C 0.055 3.945 28 C -0.167 4.167 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.024 0.976 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.007 0.993 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.878 24.284 -5.826 26.504 hybrid contribution -0.170 -1.488 -0.024 1.498 sum -9.048 22.796 -5.850 25.214 Atomic orbital electron populations 1.22085 0.77504 1.04746 1.03000 1.48055 1.08388 1.04985 1.71676 1.20669 0.87402 0.85768 0.75112 1.90677 1.15784 1.87585 1.51963 1.21241 0.98667 0.91957 0.95974 0.82612 1.21487 1.00136 0.94907 0.92589 1.22147 0.97954 0.96056 0.97171 1.20557 0.97905 0.99747 0.90489 1.21311 0.96523 0.97097 1.01174 1.17569 0.93238 0.97395 0.85892 1.91494 1.69720 1.93625 1.57557 1.20478 1.01159 1.00939 0.92120 1.21152 0.96814 0.97524 0.95174 1.20797 0.96150 0.82369 0.95612 1.22126 1.01208 0.96034 0.96576 1.20984 0.95703 0.92515 0.89047 1.44331 1.77953 1.10130 1.00744 1.19501 1.25635 0.87623 1.06729 0.91241 1.25851 0.97769 1.01010 0.99920 1.70193 1.29794 1.39598 1.18688 0.85309 0.78571 0.79373 0.76980 1.20208 1.22165 1.20016 1.20522 0.94135 0.90396 0.89437 1.22283 1.01193 0.96587 0.96600 0.91596 0.90457 0.88248 0.88883 0.85023 0.82460 0.82118 0.84153 0.91673 0.90912 0.91662 0.97627 0.91987 0.94028 0.99283 0.92064 0.92096 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 9.19 127.77 1.17 2.44 16 2 N -0.60 -16.17 2.76 -822.43 -2.27 -18.44 16 3 C 0.52 14.39 7.20 87.65 0.63 15.02 16 4 O -0.58 -21.18 15.00 -3.03 -0.05 -21.23 16 5 C -0.06 -1.04 3.07 -12.76 -0.04 -1.07 16 6 H 0.16 1.74 7.09 -2.39 -0.02 1.72 16 7 C -0.05 -0.88 7.69 29.37 0.23 -0.65 16 8 C -0.13 -2.29 7.42 -20.07 -0.15 -2.44 16 9 C -0.07 -0.99 10.06 22.36 0.22 -0.77 16 10 C -0.14 -2.15 10.02 22.27 0.22 -1.92 16 11 C 0.08 1.48 7.30 22.34 0.16 1.64 16 12 F -0.15 -3.01 17.27 44.97 0.78 -2.23 16 13 C -0.13 -2.40 10.04 22.41 0.22 -2.18 16 14 C -0.11 -1.96 6.71 -20.09 -0.13 -2.10 16 15 C 0.15 5.36 2.48 45.02 0.11 5.47 16 16 C -0.12 -4.10 5.34 30.67 0.16 -3.94 16 17 C 0.14 6.13 6.52 86.36 0.56 6.70 16 18 N -0.61 -30.80 2.99 -699.11 -2.09 -32.89 16 19 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 20 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 21 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 22 N -0.94 -55.82 11.20 21.65 0.24 -55.57 16 23 Si 0.97 44.47 29.59 68.60 2.03 46.50 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C 0.18 8.90 5.30 86.36 0.46 9.36 16 28 C -0.13 -4.75 5.31 30.67 0.16 -4.59 16 29 H 0.07 1.10 7.34 -2.39 -0.02 1.08 16 30 H 0.08 1.52 6.46 -2.39 -0.02 1.50 16 31 H 0.10 1.21 6.29 -2.39 -0.02 1.19 16 32 H 0.09 1.94 6.99 -2.38 -0.02 1.92 16 33 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.14 2.31 7.26 -2.91 -0.02 2.29 16 37 H 0.07 2.70 6.90 -2.38 -0.02 2.68 16 38 H 0.07 2.35 7.72 -2.39 -0.02 2.33 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.06 2.54 7.93 -2.39 -0.02 2.53 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.06 3.35 6.06 -2.39 -0.01 3.34 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.07 2.48 6.72 -2.39 -0.02 2.46 16 Total: -1.00 -71.34 368.06 4.86 -66.48 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.00 Total: 12.49 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.23 Total: 4.90 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -4.12 Total: -106.91 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.34 4.86 -66.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005886949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.339 kcal (2) G-P(sol) polarization free energy of solvation -71.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds