Wall clock time and date at job start Tue Mar 31 2020 16:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 119.99975 * 2 1 4 4 H 1.08001 * 120.00056 * 203.00694 * 3 2 1 5 5 C 1.38812 * 119.99818 * 23.00450 * 3 2 1 6 6 N 1.31617 * 119.99907 * 11.64587 * 5 3 2 7 7 Si 1.86794 * 119.99822 * 191.63978 * 5 3 2 8 8 H 1.48504 * 109.47286 * 60.00672 * 7 5 3 9 9 H 1.48507 * 109.47131 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47387 * 300.00111 * 7 5 3 11 11 C 1.46504 * 120.00060 * 180.02562 * 2 1 3 12 12 H 1.08996 * 109.52164 * 180.08184 * 11 2 1 13 13 C 1.53038 * 109.49928 * 59.99943 * 11 2 1 14 14 C 1.53038 * 109.53895 * 178.68630 * 13 11 2 15 15 C 1.53188 * 109.31350 * 61.36047 * 14 13 11 16 16 N 1.46927 * 108.77947 * 305.36714 * 15 14 13 17 17 C 1.34778 * 120.63219 * 233.58649 * 16 15 14 18 18 O 1.21276 * 119.99800 * 179.97438 * 17 16 15 19 19 C 1.50696 * 119.99714 * 359.97438 * 17 16 15 20 20 H 1.08998 * 113.12863 * 312.36344 * 19 17 16 21 21 C 1.52887 * 113.98313 * 180.02562 * 19 17 16 22 22 C 1.50770 * 89.76181 * 246.05127 * 21 19 17 23 23 C 1.38262 * 149.29776 * 180.02562 * 22 21 19 24 24 C 1.38139 * 120.15155 * 179.97438 * 23 22 21 25 25 C 1.38455 * 119.72680 * 0.02562 * 24 23 22 26 26 F 1.35099 * 119.94324 * 180.02562 * 25 24 23 27 27 C 1.38200 * 120.12350 * 0.27246 * 25 24 23 28 28 C 1.38367 * 90.24708 * 359.97438 * 22 21 19 29 29 C 1.46930 * 118.73417 * 53.85709 * 16 15 14 30 30 H 1.08998 * 109.47517 * 273.84951 * 1 2 3 31 31 H 1.08998 * 109.47773 * 33.85487 * 1 2 3 32 32 H 1.09002 * 109.47098 * 153.85195 * 1 2 3 33 33 H 0.97003 * 119.99663 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.46234 * 58.66322 * 13 11 2 35 35 H 1.09000 * 109.45859 * 298.70160 * 13 11 2 36 36 H 1.09007 * 109.49243 * 301.41286 * 14 13 11 37 37 H 1.08997 * 109.49854 * 181.31831 * 14 13 11 38 38 H 1.09005 * 109.58530 * 185.57990 * 15 14 13 39 39 H 1.08994 * 109.58540 * 65.15767 * 15 14 13 40 40 H 1.08999 * 113.16588 * 130.83496 * 21 19 17 41 41 H 1.08996 * 113.16810 * 1.27260 * 21 19 17 42 42 H 1.07997 * 119.92395 * 359.97438 * 23 22 21 43 43 H 1.08001 * 120.13151 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.84974 * 179.72885 * 27 25 24 45 45 H 1.08997 * 109.58396 * 65.93284 * 29 16 15 46 46 H 1.09003 * 109.57969 * 186.35409 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1652 1.2232 -0.3656 5 6 1.5383 2.3403 0.4698 6 7 0.3981 2.2621 1.1225 7 14 2.3342 4.0044 0.1759 8 1 2.4677 4.2383 -1.2845 9 1 1.4890 5.0697 0.7729 10 1 3.6785 4.0285 0.8061 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0705 0.0010 13 6 1.8282 -2.0713 -1.2503 14 6 2.6175 -3.3823 -1.2684 15 6 2.2497 -4.2123 -0.0345 16 7 2.4654 -3.3946 1.1670 17 6 3.2358 -3.8469 2.1762 18 8 3.4065 -3.1622 3.1625 19 6 3.8851 -5.2033 2.0788 20 1 3.1969 -5.9854 1.7584 21 6 4.7270 -5.5783 3.2987 22 6 5.9692 -5.5407 2.4452 23 6 7.3398 -5.6845 2.3337 24 6 7.9611 -5.4897 1.1154 25 6 7.2056 -5.1493 0.0061 26 9 7.8087 -4.9583 -1.1876 27 6 5.8364 -4.9996 0.1188 28 6 5.2074 -5.2019 1.3409 29 6 1.8203 -2.0771 1.2501 30 1 -0.3634 0.0690 1.0253 31 1 -0.3634 0.8534 -0.5725 32 1 -0.3633 -0.9225 -0.4529 33 1 -0.0293 3.0688 1.4504 34 1 2.0698 -1.4896 -2.1399 35 1 0.7605 -2.2904 -1.2387 36 1 3.6855 -3.1641 -1.2549 37 1 2.3716 -3.9426 -2.1704 38 1 2.8802 -5.1003 0.0097 39 1 1.2022 -4.5079 -0.0921 40 1 4.5024 -6.5723 3.6855 41 1 4.7181 -4.8151 4.0768 42 1 7.9260 -5.9497 3.2011 43 1 9.0318 -5.6017 1.0287 44 1 5.2520 -4.7297 -0.7484 45 1 0.7384 -2.2023 1.2951 46 1 2.1674 -1.5560 2.1423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027544795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:44 Heat of formation + Delta-G solvation = 12.997389 kcal Electronic energy + Delta-G solvation = -29091.983424 eV Core-core repulsion = 25091.203478 eV Total energy + Delta-G solvation = -4000.779946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 4.44 seconds Orbital eigenvalues (eV) -49.06524 -41.28660 -39.33518 -37.45727 -35.18964 -35.11150 -32.36977 -31.34810 -31.03604 -29.05001 -27.73765 -26.03429 -25.88457 -24.50395 -23.44862 -22.54428 -21.68637 -21.00759 -19.41950 -18.61517 -17.64077 -17.30524 -16.74976 -16.72960 -15.83263 -15.63887 -15.32274 -15.20464 -14.87456 -14.41822 -14.23052 -14.05374 -13.84611 -13.59321 -13.50463 -13.17737 -12.77912 -12.65433 -12.53144 -12.27715 -12.11549 -11.94519 -11.82730 -11.36264 -11.19787 -11.02084 -10.84899 -10.78143 -10.63193 -10.40901 -10.36213 -10.20487 -9.93601 -9.79156 -9.73459 -9.14454 -8.67661 -8.58357 -8.34657 -6.75173 -5.72000 -3.18559 0.83604 0.95366 2.61399 3.08850 3.32883 3.41175 3.45672 3.46914 3.73030 3.93667 4.23064 4.29252 4.48985 4.54679 4.68695 4.86609 4.96260 5.05329 5.10797 5.26196 5.27738 5.39580 5.43726 5.50530 5.51281 5.56671 5.67559 5.72880 5.80918 5.86108 5.89452 5.92657 5.97796 6.11293 6.21484 6.35735 6.36955 6.48257 6.61979 6.65278 6.76505 6.91488 6.97243 7.38224 7.60996 7.72004 7.81780 8.30719 8.41122 9.24147 9.86266 10.34799 11.32832 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.003309 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.290606 B = 8460.909221 C = 8855.724016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.591 5.591 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.132 4.132 15 C 0.106 3.894 16 N -0.601 5.601 17 C 0.528 3.472 18 O -0.532 6.532 19 C -0.069 4.069 20 H 0.125 0.875 21 C -0.055 4.055 22 C -0.126 4.126 23 C -0.065 4.065 24 C -0.145 4.145 25 C 0.097 3.903 26 F -0.138 7.138 27 C -0.124 4.124 28 C -0.091 4.091 29 C 0.098 3.902 30 H 0.028 0.972 31 H 0.044 0.956 32 H -0.001 1.001 33 H 0.253 0.747 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.140 0.860 44 H 0.134 0.866 45 H 0.063 0.937 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.378 -21.421 -1.152 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.171 4.171 15 C -0.017 4.017 16 N -0.334 5.334 17 C 0.314 3.686 18 O -0.409 6.409 19 C -0.091 4.091 20 H 0.143 0.857 21 C -0.092 4.092 22 C -0.127 4.127 23 C -0.083 4.083 24 C -0.164 4.164 25 C 0.078 3.922 26 F -0.116 7.116 27 C -0.143 4.143 28 C -0.092 4.092 29 C -0.026 4.026 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.152 0.848 45 H 0.081 0.919 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.356 -20.838 -0.612 22.459 hybrid contribution 0.437 1.011 -0.571 1.240 sum 8.793 -19.827 -1.183 21.722 Atomic orbital electron populations 1.20790 0.82558 0.95677 0.99227 1.43925 1.01853 0.99999 1.85506 1.19179 0.98390 0.85348 1.35747 0.91489 1.25033 0.97756 0.98566 0.98022 1.70052 1.18447 1.27359 1.39266 0.86321 0.78597 0.83692 0.77840 1.21061 1.21586 1.20903 1.20707 0.96440 0.86192 0.90667 0.91791 1.22085 0.99635 0.94902 1.00645 1.21921 1.01036 0.97384 0.96723 1.21770 1.01343 0.93591 0.84994 1.48258 1.48519 1.19336 1.17239 1.19823 0.78776 0.86955 0.83049 1.90713 1.61238 1.57749 1.31162 1.21427 0.94125 0.97258 0.96243 0.85687 1.21507 0.87479 1.03609 0.96563 1.21770 0.93797 0.99222 0.97869 1.19985 0.92226 0.99085 0.97025 1.21036 1.00588 1.03072 0.91657 1.17310 0.90655 1.02851 0.81364 1.91515 1.83460 1.92876 1.43791 1.20497 0.92718 1.02517 0.98530 1.21622 0.95398 0.99080 0.93085 1.22683 0.96616 0.80752 1.02513 0.95356 0.93682 0.98297 0.93656 0.91660 0.92176 0.91813 0.91146 0.90444 0.91263 0.88541 0.87120 0.85024 0.84195 0.84835 0.91898 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.91 59.84 0.47 4.39 16 2 N -0.59 -14.68 2.82 -173.10 -0.49 -15.17 16 3 C -0.26 -7.13 9.59 -15.06 -0.14 -7.27 16 4 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 5 C 0.00 0.14 5.12 -17.43 -0.09 0.05 16 6 N -0.91 -26.54 10.64 55.49 0.59 -25.94 16 7 Si 0.91 22.18 29.57 -169.99 -5.03 17.16 16 8 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 C 0.17 3.44 2.76 -67.59 -0.19 3.26 16 12 H 0.06 1.41 7.87 -51.93 -0.41 1.00 16 13 C -0.13 -2.16 5.13 -26.69 -0.14 -2.30 16 14 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 15 C 0.11 1.20 6.30 -3.71 -0.02 1.18 16 16 N -0.60 -9.16 2.97 -172.51 -0.51 -9.67 16 17 C 0.53 8.20 7.26 -10.99 -0.08 8.12 16 18 O -0.53 -10.49 15.13 5.56 0.08 -10.41 16 19 C -0.07 -0.76 3.01 -92.63 -0.28 -1.04 16 20 H 0.13 0.99 7.42 -51.93 -0.39 0.61 16 21 C -0.05 -0.55 7.54 -31.53 -0.24 -0.78 16 22 C -0.13 -1.36 7.59 -104.53 -0.79 -2.15 16 23 C -0.07 -0.61 10.03 -39.61 -0.40 -1.01 16 24 C -0.14 -1.40 10.04 -39.54 -0.40 -1.80 16 25 C 0.10 1.11 7.29 -39.52 -0.29 0.82 16 26 F -0.14 -1.66 17.26 2.25 0.04 -1.62 16 27 C -0.12 -1.42 10.02 -39.34 -0.39 -1.82 16 28 C -0.09 -1.04 6.48 -107.58 -0.70 -1.74 16 29 C 0.10 1.88 5.81 -3.49 -0.02 1.86 16 30 H 0.03 0.74 7.42 -51.93 -0.39 0.36 16 31 H 0.04 1.18 7.22 -51.93 -0.37 0.80 16 32 H 0.00 -0.03 6.46 -51.93 -0.34 -0.36 16 33 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 36 H 0.06 0.81 7.66 -51.93 -0.40 0.42 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.69 5.68 -51.93 -0.29 0.40 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.11 1.31 7.04 -51.93 -0.37 0.94 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.40 7.58 -52.48 -0.40 1.01 16 45 H 0.06 1.20 7.53 -51.93 -0.39 0.81 16 46 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -32.42 368.07 -10.15 -42.57 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.53 Total: -0.45 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.85 Total: -2.01 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.41 Total: -50.78 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.42 -10.15 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.571 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.44 seconds