Wall clock time and date at job start Tue Mar 31 2020 16:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 119.99975 * 2 1 4 4 H 1.08001 * 120.00056 * 203.00694 * 3 2 1 5 5 C 1.38812 * 119.99818 * 23.00450 * 3 2 1 6 6 N 1.31617 * 119.99907 * 11.64587 * 5 3 2 7 7 Si 1.86794 * 119.99822 * 191.63978 * 5 3 2 8 8 H 1.48504 * 109.47286 * 60.00672 * 7 5 3 9 9 H 1.48507 * 109.47131 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47387 * 300.00111 * 7 5 3 11 11 C 1.46504 * 120.00060 * 180.02562 * 2 1 3 12 12 H 1.08996 * 109.52164 * 180.08184 * 11 2 1 13 13 C 1.53038 * 109.49928 * 59.99943 * 11 2 1 14 14 C 1.53038 * 109.53895 * 178.68630 * 13 11 2 15 15 C 1.53188 * 109.31350 * 61.36047 * 14 13 11 16 16 N 1.46927 * 108.77947 * 305.36714 * 15 14 13 17 17 C 1.34778 * 120.63219 * 233.58649 * 16 15 14 18 18 O 1.21276 * 119.99800 * 179.97438 * 17 16 15 19 19 C 1.50696 * 119.99714 * 359.97438 * 17 16 15 20 20 H 1.08998 * 113.12863 * 312.36344 * 19 17 16 21 21 C 1.52887 * 113.98313 * 180.02562 * 19 17 16 22 22 C 1.50770 * 89.76181 * 246.05127 * 21 19 17 23 23 C 1.38262 * 149.29776 * 180.02562 * 22 21 19 24 24 C 1.38139 * 120.15155 * 179.97438 * 23 22 21 25 25 C 1.38455 * 119.72680 * 0.02562 * 24 23 22 26 26 F 1.35099 * 119.94324 * 180.02562 * 25 24 23 27 27 C 1.38200 * 120.12350 * 0.27246 * 25 24 23 28 28 C 1.38367 * 90.24708 * 359.97438 * 22 21 19 29 29 C 1.46930 * 118.73417 * 53.85709 * 16 15 14 30 30 H 1.08998 * 109.47517 * 273.84951 * 1 2 3 31 31 H 1.08998 * 109.47773 * 33.85487 * 1 2 3 32 32 H 1.09002 * 109.47098 * 153.85195 * 1 2 3 33 33 H 0.97003 * 119.99663 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.46234 * 58.66322 * 13 11 2 35 35 H 1.09000 * 109.45859 * 298.70160 * 13 11 2 36 36 H 1.09007 * 109.49243 * 301.41286 * 14 13 11 37 37 H 1.08997 * 109.49854 * 181.31831 * 14 13 11 38 38 H 1.09005 * 109.58530 * 185.57990 * 15 14 13 39 39 H 1.08994 * 109.58540 * 65.15767 * 15 14 13 40 40 H 1.08999 * 113.16588 * 130.83496 * 21 19 17 41 41 H 1.08996 * 113.16810 * 1.27260 * 21 19 17 42 42 H 1.07997 * 119.92395 * 359.97438 * 23 22 21 43 43 H 1.08001 * 120.13151 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.84974 * 179.72885 * 27 25 24 45 45 H 1.08997 * 109.58396 * 65.93284 * 29 16 15 46 46 H 1.09003 * 109.57969 * 186.35409 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1652 1.2232 -0.3656 5 6 1.5383 2.3403 0.4698 6 7 0.3981 2.2621 1.1225 7 14 2.3342 4.0044 0.1759 8 1 2.4677 4.2383 -1.2845 9 1 1.4890 5.0697 0.7729 10 1 3.6785 4.0285 0.8061 11 6 2.1975 -1.2688 -0.0006 12 1 3.2693 -1.0705 0.0010 13 6 1.8282 -2.0713 -1.2503 14 6 2.6175 -3.3823 -1.2684 15 6 2.2497 -4.2123 -0.0345 16 7 2.4654 -3.3946 1.1670 17 6 3.2358 -3.8469 2.1762 18 8 3.4065 -3.1622 3.1625 19 6 3.8851 -5.2033 2.0788 20 1 3.1969 -5.9854 1.7584 21 6 4.7270 -5.5783 3.2987 22 6 5.9692 -5.5407 2.4452 23 6 7.3398 -5.6845 2.3337 24 6 7.9611 -5.4897 1.1154 25 6 7.2056 -5.1493 0.0061 26 9 7.8087 -4.9583 -1.1876 27 6 5.8364 -4.9996 0.1188 28 6 5.2074 -5.2019 1.3409 29 6 1.8203 -2.0771 1.2501 30 1 -0.3634 0.0690 1.0253 31 1 -0.3634 0.8534 -0.5725 32 1 -0.3633 -0.9225 -0.4529 33 1 -0.0293 3.0688 1.4504 34 1 2.0698 -1.4896 -2.1399 35 1 0.7605 -2.2904 -1.2387 36 1 3.6855 -3.1641 -1.2549 37 1 2.3716 -3.9426 -2.1704 38 1 2.8802 -5.1003 0.0097 39 1 1.2022 -4.5079 -0.0921 40 1 4.5024 -6.5723 3.6855 41 1 4.7181 -4.8151 4.0768 42 1 7.9260 -5.9497 3.2011 43 1 9.0318 -5.6017 1.0287 44 1 5.2520 -4.7297 -0.7484 45 1 0.7384 -2.2023 1.2951 46 1 2.1674 -1.5560 2.1423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027544795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:41 Heat of formation + Delta-G solvation = -4.857386 kcal Electronic energy + Delta-G solvation = -29092.757665 eV Core-core repulsion = 25091.203478 eV Total energy + Delta-G solvation = -4001.554187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -49.92802 -42.23721 -40.49464 -38.86503 -36.81343 -36.05629 -33.99081 -32.85798 -31.89261 -30.65818 -28.67910 -28.06693 -26.95784 -25.71575 -24.97381 -23.44885 -23.06878 -21.93574 -20.83444 -19.81987 -18.88978 -18.57063 -18.22627 -17.60901 -17.05442 -16.90207 -16.58453 -16.22212 -16.14181 -15.79696 -15.53167 -15.27152 -15.03242 -14.92395 -14.57662 -14.41923 -14.16394 -13.97981 -13.82207 -13.63825 -13.35660 -13.07657 -12.87110 -12.78485 -12.70354 -12.50285 -12.24161 -12.19533 -12.16668 -12.09478 -11.79848 -11.70141 -11.59171 -11.41316 -11.02452 -10.66607 -9.97588 -9.72583 -9.50104 -8.77999 -7.86569 -5.35394 0.03262 0.16463 1.42424 1.43945 1.45827 1.51346 1.91658 2.47498 2.51613 2.86562 3.15307 3.26925 3.36767 3.52233 3.54437 3.63024 3.93315 3.99622 4.05429 4.08488 4.21266 4.23173 4.32652 4.35130 4.50509 4.58719 4.61315 4.68552 4.77173 4.82030 4.86879 4.91092 4.94168 5.00692 5.05588 5.07777 5.13521 5.17473 5.25599 5.39675 5.46032 5.53657 5.58274 5.59913 5.70509 5.84703 6.29666 6.41112 7.09100 7.12703 7.83715 8.25854 9.15898 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.003309 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.290606 B = 8460.909221 C = 8855.724016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.609 5.609 3 C -0.269 4.269 4 H 0.063 0.937 5 C -0.048 4.048 6 N -0.936 5.936 7 Si 0.967 3.033 8 H -0.275 1.275 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.168 3.832 12 H 0.038 0.962 13 C -0.122 4.122 14 C -0.124 4.124 15 C 0.102 3.898 16 N -0.600 5.600 17 C 0.520 3.480 18 O -0.585 6.585 19 C -0.059 4.059 20 H 0.166 0.834 21 C -0.051 4.051 22 C -0.134 4.134 23 C -0.067 4.067 24 C -0.141 4.141 25 C 0.077 3.923 26 F -0.146 7.146 27 C -0.133 4.133 28 C -0.107 4.107 29 C 0.114 3.886 30 H -0.001 1.001 31 H 0.018 0.982 32 H 0.037 0.963 33 H 0.249 0.751 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.140 0.860 45 H 0.064 0.936 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.246 -24.447 -2.258 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.331 5.331 3 C -0.399 4.399 4 H 0.081 0.919 5 C -0.244 4.244 6 N -0.582 5.582 7 Si 0.795 3.205 8 H -0.200 1.200 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.060 3.940 12 H 0.056 0.944 13 C -0.161 4.161 14 C -0.163 4.163 15 C -0.019 4.019 16 N -0.332 5.332 17 C 0.309 3.691 18 O -0.465 6.465 19 C -0.079 4.079 20 H 0.183 0.817 21 C -0.088 4.088 22 C -0.135 4.135 23 C -0.084 4.084 24 C -0.160 4.160 25 C 0.058 3.942 26 F -0.125 7.125 27 C -0.152 4.152 28 C -0.108 4.108 29 C -0.011 4.011 30 H 0.017 0.983 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.177 0.823 43 H 0.181 0.819 44 H 0.158 0.842 45 H 0.082 0.918 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.243 -23.925 -1.760 25.709 hybrid contribution 0.245 1.903 -0.216 1.931 sum 9.488 -22.022 -1.976 24.060 Atomic orbital electron populations 1.20497 0.82369 0.96304 0.97288 1.44140 1.02246 1.00907 1.85852 1.19466 0.98408 0.86929 1.35131 0.91932 1.25773 0.98507 1.01814 0.98282 1.70218 1.19728 1.27738 1.40488 0.85345 0.77536 0.79577 0.78007 1.20049 1.21639 1.20720 1.20846 0.94510 0.85322 0.93329 0.94383 1.21915 1.00732 0.96213 0.97271 1.21908 0.99863 0.95521 0.98975 1.22129 1.03625 0.93712 0.82445 1.48294 1.48013 1.18042 1.18853 1.20704 0.77995 0.88355 0.82030 1.90692 1.62873 1.59677 1.33288 1.21453 0.94467 0.94886 0.97100 0.81676 1.21529 0.86951 1.04779 0.95521 1.22041 0.94542 0.99101 0.97786 1.20328 0.92058 0.98195 0.97852 1.21362 1.01758 1.01713 0.91129 1.17572 0.91040 1.03958 0.81665 1.91492 1.83569 1.93083 1.44320 1.20627 0.93012 1.02658 0.98914 1.21676 0.95621 1.00087 0.93366 1.22083 0.96609 0.82780 0.99642 0.98283 0.96362 0.94481 0.94165 0.92725 0.91385 0.92516 0.87207 0.87002 0.88982 0.84918 0.89484 0.82325 0.81933 0.84245 0.91778 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.92 7.91 127.77 1.01 9.93 16 2 N -0.61 -31.21 2.82 -701.55 -1.98 -33.19 16 3 C -0.27 -15.43 9.59 84.03 0.81 -14.63 16 4 H 0.06 3.55 7.82 -2.91 -0.02 3.53 16 5 C -0.05 -2.80 5.12 84.86 0.43 -2.37 16 6 N -0.94 -56.81 10.64 21.65 0.23 -56.58 16 7 Si 0.97 46.73 29.57 68.60 2.03 48.76 16 8 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 11 C 0.17 6.97 2.76 45.21 0.12 7.10 16 12 H 0.04 1.74 7.87 -2.39 -0.02 1.73 16 13 C -0.12 -3.77 5.13 30.62 0.16 -3.61 16 14 C -0.12 -2.63 6.08 30.67 0.19 -2.44 16 15 C 0.10 1.94 6.30 86.36 0.54 2.48 16 16 N -0.60 -17.72 2.97 -818.08 -2.43 -20.15 16 17 C 0.52 15.92 7.26 87.66 0.64 16.55 16 18 O -0.59 -24.01 15.13 -3.02 -0.05 -24.06 16 19 C -0.06 -1.13 3.01 -12.09 -0.04 -1.17 16 20 H 0.17 1.82 7.42 -2.39 -0.02 1.80 16 21 C -0.05 -0.91 7.54 27.49 0.21 -0.70 16 22 C -0.13 -2.58 7.59 -19.81 -0.15 -2.73 16 23 C -0.07 -1.08 10.03 22.25 0.22 -0.86 16 24 C -0.14 -2.40 10.04 22.30 0.22 -2.18 16 25 C 0.08 1.62 7.29 22.31 0.16 1.78 16 26 F -0.15 -3.34 17.26 44.97 0.78 -2.56 16 27 C -0.13 -2.81 10.02 22.42 0.22 -2.58 16 28 C -0.11 -2.20 6.48 -21.78 -0.14 -2.34 16 29 C 0.11 4.50 5.81 86.51 0.50 5.00 16 30 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 31 H 0.02 0.96 7.22 -2.39 -0.02 0.95 16 32 H 0.04 1.51 6.46 -2.39 -0.02 1.50 16 33 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.00 6.71 -2.39 -0.02 1.99 16 36 H 0.06 1.31 7.66 -2.38 -0.02 1.29 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.44 5.68 -2.38 -0.01 1.43 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 2.02 7.04 -2.39 -0.02 2.01 16 42 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.14 2.63 7.58 -2.91 -0.02 2.61 16 45 H 0.06 2.49 7.53 -2.39 -0.02 2.47 16 46 H 0.04 2.14 7.00 -2.39 -0.02 2.12 16 Total: -1.00 -76.26 368.07 4.70 -71.56 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.99 Total: 8.97 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 5.12 Total: 7.25 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.17 Total: -109.91 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -76.26 4.70 -71.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.700 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds