Wall clock time and date at job start Tue Mar 31 2020 16:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00207 * 2 1 4 4 H 1.07997 * 120.00289 * 160.03818 * 3 2 1 5 5 C 1.38815 * 119.99660 * 340.04072 * 3 2 1 6 6 N 1.31615 * 120.00342 * 344.13804 * 5 3 2 7 7 Si 1.86804 * 119.99982 * 164.14466 * 5 3 2 8 8 H 1.48497 * 109.47322 * 84.88598 * 7 5 3 9 9 H 1.48501 * 109.46920 * 324.88727 * 7 5 3 10 10 H 1.48501 * 109.46813 * 204.88880 * 7 5 3 11 11 C 1.46498 * 120.00300 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.50275 * 179.97438 * 11 2 1 13 13 C 1.53040 * 109.49923 * 300.06802 * 11 2 1 14 14 C 1.53036 * 109.54001 * 181.31598 * 13 11 2 15 15 C 1.53195 * 109.31062 * 298.63231 * 14 13 11 16 16 N 1.46915 * 108.77658 * 54.63522 * 15 14 13 17 17 C 1.34777 * 120.63191 * 126.38776 * 16 15 14 18 18 O 1.21290 * 120.00150 * 179.97438 * 17 16 15 19 19 C 1.50697 * 120.00147 * 0.02562 * 17 16 15 20 20 H 1.09001 * 112.50556 * 309.67820 * 19 17 16 21 21 C 1.52883 * 113.17000 * 179.76653 * 19 17 16 22 22 C 1.51437 * 84.73848 * 244.77852 * 21 19 17 23 23 C 1.38961 * 145.49630 * 179.97438 * 22 21 19 24 24 C 1.37940 * 120.35851 * 179.97438 * 23 22 21 25 25 C 1.38460 * 120.14742 * 0.02863 * 24 23 22 26 26 F 1.35103 * 120.15089 * 179.97438 * 25 24 23 27 27 C 1.38400 * 119.70067 * 359.97200 * 25 24 23 28 28 C 1.38204 * 120.09777 * 0.02562 * 27 25 24 29 29 C 1.46935 * 118.76815 * 306.41107 * 16 15 14 30 30 H 1.08991 * 109.46788 * 85.43487 * 1 2 3 31 31 H 1.08995 * 109.46946 * 205.44126 * 1 2 3 32 32 H 1.09003 * 109.47018 * 325.43467 * 1 2 3 33 33 H 0.96997 * 120.00585 * 180.02562 * 6 5 3 34 34 H 1.09006 * 109.45828 * 301.33609 * 13 11 2 35 35 H 1.09001 * 109.46012 * 61.30050 * 13 11 2 36 36 H 1.08998 * 109.49977 * 58.58187 * 14 13 11 37 37 H 1.09000 * 109.49626 * 178.65003 * 14 13 11 38 38 H 1.08996 * 109.58663 * 174.42515 * 15 14 13 39 39 H 1.09002 * 109.58155 * 294.70446 * 15 14 13 40 40 H 1.08996 * 113.98368 * 358.72197 * 21 19 17 41 41 H 1.08999 * 113.98530 * 130.82839 * 21 19 17 42 42 H 1.08001 * 119.82369 * 0.02562 * 23 22 21 43 43 H 1.08000 * 119.92338 * 179.97438 * 24 23 22 44 44 H 1.07991 * 119.94955 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.56553 * 293.78943 * 29 16 15 46 46 H 1.09002 * 109.62066 * 173.35569 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1811 1.2140 0.3193 5 6 1.5182 2.3519 -0.4104 6 7 0.3899 2.2869 -1.0849 7 14 2.2698 4.0135 -0.0055 8 1 3.2801 4.3641 -1.0358 9 1 2.9229 3.9499 1.3267 10 1 1.2039 5.0472 0.0146 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8271 -2.0719 1.2494 14 6 2.6165 -3.3829 1.2677 15 6 2.2497 -4.2123 0.0329 16 7 2.4665 -3.3940 -1.1678 17 6 3.2384 -3.8455 -2.1763 18 8 3.4093 -3.1606 -3.1626 19 6 3.8881 -5.2017 -2.0789 20 1 4.4249 -5.3407 -1.1405 21 6 4.7224 -5.5587 -3.3093 22 6 3.7008 -6.6583 -3.5104 23 6 3.3105 -7.7268 -4.3085 24 6 2.1838 -8.4575 -3.9931 25 6 1.4323 -8.1299 -2.8773 26 9 0.3285 -8.8451 -2.5687 27 6 1.8171 -7.0665 -2.0794 28 6 2.9462 -6.3353 -2.3964 29 6 1.8267 -2.0738 -1.2489 30 1 -0.3632 0.0818 -1.0243 31 1 -0.3633 -0.9280 0.4415 32 1 -0.3633 0.8463 0.5831 33 1 -0.0513 3.1017 -1.3720 34 1 2.0677 -1.4907 2.1396 35 1 0.7594 -2.2912 1.2367 36 1 3.6843 -3.1648 1.2553 37 1 2.3700 -3.9434 2.1694 38 1 2.8802 -5.1002 -0.0112 39 1 1.2027 -4.5100 0.0907 40 1 4.7119 -4.7963 -4.0882 41 1 5.7235 -5.9211 -3.0758 42 1 3.8929 -7.9872 -5.1799 43 1 1.8867 -9.2863 -4.6186 44 1 1.2342 -6.8078 -1.2080 45 1 0.7445 -2.1950 -1.2976 46 1 2.1782 -1.5507 -2.1383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027544796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:54 Heat of formation + Delta-G solvation = 13.874746 kcal Electronic energy + Delta-G solvation = -28790.271389 eV Core-core repulsion = 24789.529488 eV Total energy + Delta-G solvation = -4000.741901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.13499 -41.34660 -39.34260 -37.46317 -35.21290 -35.12173 -32.38340 -31.32548 -31.13310 -29.04710 -27.71743 -26.05387 -25.92657 -24.53277 -23.49731 -22.52303 -21.74260 -21.04831 -19.37440 -18.62090 -17.75497 -17.25838 -16.81553 -16.73597 -15.89963 -15.68529 -15.45268 -15.12246 -14.85102 -14.30098 -14.23254 -14.13166 -13.81643 -13.71630 -13.64117 -13.10024 -12.69521 -12.66028 -12.49327 -12.33574 -12.05284 -12.01971 -11.84649 -11.63225 -11.18658 -11.05565 -10.85358 -10.79252 -10.60456 -10.42572 -10.36969 -10.20046 -9.92504 -9.79182 -9.74064 -9.19526 -8.70543 -8.58979 -8.34038 -6.79253 -5.72924 -3.15949 0.79694 0.89641 2.62585 3.09183 3.28753 3.39755 3.45753 3.47564 3.61926 3.98751 4.15829 4.27210 4.48608 4.53927 4.64199 4.83764 4.97934 5.02251 5.11064 5.18736 5.27298 5.33931 5.42846 5.48599 5.50399 5.57196 5.64701 5.72256 5.78015 5.83597 5.89398 5.91609 5.97339 6.09838 6.20979 6.32068 6.35523 6.47658 6.56978 6.64428 6.75664 6.90867 6.95955 7.37192 7.61227 7.70102 7.81344 8.30573 8.38760 9.22521 9.86128 10.33554 11.32285 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002798 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.356789 B =10004.409049 C =10383.239049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.257 4.257 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.286 1.286 9 H -0.281 1.281 10 H -0.290 1.290 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.107 3.893 16 N -0.600 5.600 17 C 0.524 3.476 18 O -0.533 6.533 19 C -0.063 4.063 20 H 0.121 0.879 21 C -0.058 4.058 22 C -0.124 4.124 23 C -0.072 4.072 24 C -0.147 4.147 25 C 0.098 3.902 26 F -0.137 7.137 27 C -0.116 4.116 28 C -0.096 4.096 29 C 0.097 3.903 30 H 0.028 0.972 31 H 0.000 1.000 32 H 0.044 0.956 33 H 0.253 0.747 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.061 0.939 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 -22.915 -0.262 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.386 4.386 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.734 3.266 8 H -0.213 1.213 9 H -0.207 1.207 10 H -0.216 1.216 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.333 5.333 17 C 0.311 3.689 18 O -0.410 6.410 19 C -0.084 4.084 20 H 0.139 0.861 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.090 4.090 24 C -0.165 4.165 25 C 0.078 3.922 26 F -0.115 7.115 27 C -0.135 4.135 28 C -0.096 4.096 29 C -0.026 4.026 30 H 0.046 0.954 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.121 0.879 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.152 0.848 45 H 0.079 0.921 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.601 -22.384 -0.835 23.089 hybrid contribution -0.157 0.703 0.321 0.789 sum 5.444 -21.681 -0.515 22.360 Atomic orbital electron populations 1.20788 0.82536 0.95661 0.99349 1.43967 1.01876 1.00035 1.85422 1.19204 0.96800 0.84702 1.37887 0.91305 1.24959 0.97892 0.98361 0.98395 1.70087 1.19061 1.26856 1.38969 0.86289 0.78136 0.83930 0.78256 1.21340 1.20663 1.21598 1.20615 0.96477 0.86185 0.90721 0.91701 1.22093 0.99665 0.94935 1.00637 1.21912 1.01101 0.97308 0.96676 1.21762 1.01368 0.93550 0.84956 1.48245 1.48577 1.19084 1.17389 1.19969 0.79129 0.86852 0.82994 1.90713 1.61459 1.57984 1.30834 1.21384 0.94640 0.90430 1.01941 0.86116 1.21776 0.96332 0.94612 0.96758 1.22437 0.98284 0.96100 0.95555 1.20364 0.95696 0.93781 0.99182 1.20968 0.96175 1.02100 0.97287 1.17306 0.85623 0.92902 0.96334 1.91514 1.50538 1.76663 1.92829 1.20067 0.97166 0.95111 1.01183 1.21032 0.94670 0.96199 0.97732 1.22602 0.96769 0.80756 1.02489 0.95362 0.98168 0.93709 0.93704 0.91610 0.92248 0.91646 0.91184 0.90420 0.91500 0.86543 0.87914 0.85154 0.84381 0.84807 0.92060 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.92 59.85 0.47 4.37 16 2 N -0.59 -14.57 2.82 -173.35 -0.49 -15.06 16 3 C -0.26 -7.03 9.61 -15.06 -0.14 -7.18 16 4 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 5 C 0.00 0.07 5.04 -17.43 -0.09 -0.02 16 6 N -0.90 -26.47 10.70 55.49 0.59 -25.87 16 7 Si 0.90 21.95 29.58 -169.99 -5.03 16.92 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.17 3.39 2.74 -67.81 -0.19 3.20 16 12 H 0.06 1.37 7.85 -51.93 -0.41 0.96 16 13 C -0.13 -2.14 5.13 -26.69 -0.14 -2.27 16 14 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 15 C 0.11 1.22 6.24 -3.71 -0.02 1.20 16 16 N -0.60 -9.16 2.97 -172.76 -0.51 -9.68 16 17 C 0.52 8.12 7.20 -10.99 -0.08 8.04 16 18 O -0.53 -10.45 15.08 5.55 0.08 -10.37 16 19 C -0.06 -0.69 2.82 -96.56 -0.27 -0.96 16 20 H 0.12 1.01 7.27 -51.93 -0.38 0.63 16 21 C -0.06 -0.57 7.91 -27.58 -0.22 -0.78 16 22 C -0.12 -1.28 7.32 -107.55 -0.79 -2.06 16 23 C -0.07 -0.65 10.04 -39.42 -0.40 -1.04 16 24 C -0.15 -1.33 10.01 -39.61 -0.40 -1.73 16 25 C 0.10 1.03 7.31 -39.44 -0.29 0.74 16 26 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 27 C -0.12 -1.24 10.02 -39.53 -0.40 -1.63 16 28 C -0.10 -1.05 6.62 -104.55 -0.69 -1.74 16 29 C 0.10 1.87 5.79 -3.70 -0.02 1.85 16 30 H 0.03 0.75 7.44 -51.93 -0.39 0.36 16 31 H 0.00 0.00 6.46 -51.93 -0.34 -0.34 16 32 H 0.04 1.17 7.17 -51.93 -0.37 0.80 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.69 5.59 -51.93 -0.29 0.40 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.12 1.34 7.02 -51.93 -0.36 0.98 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.06 1.20 7.51 -51.93 -0.39 0.81 16 46 H 0.09 2.10 7.01 -51.93 -0.36 1.73 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -32.21 368.57 -10.14 -42.35 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.56 Total: -0.64 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -3.81 Total: -1.74 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.41 Total: -50.60 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.21 -10.14 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.224 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds