Wall clock time and date at job start Tue Mar 31 2020 16:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 120.00207 * 2 1 4 4 H 1.07997 * 120.00289 * 160.03818 * 3 2 1 5 5 C 1.38815 * 119.99660 * 340.04072 * 3 2 1 6 6 N 1.31615 * 120.00342 * 344.13804 * 5 3 2 7 7 Si 1.86804 * 119.99982 * 164.14466 * 5 3 2 8 8 H 1.48497 * 109.47322 * 84.88598 * 7 5 3 9 9 H 1.48501 * 109.46920 * 324.88727 * 7 5 3 10 10 H 1.48501 * 109.46813 * 204.88880 * 7 5 3 11 11 C 1.46498 * 120.00300 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.50275 * 179.97438 * 11 2 1 13 13 C 1.53040 * 109.49923 * 300.06802 * 11 2 1 14 14 C 1.53036 * 109.54001 * 181.31598 * 13 11 2 15 15 C 1.53195 * 109.31062 * 298.63231 * 14 13 11 16 16 N 1.46915 * 108.77658 * 54.63522 * 15 14 13 17 17 C 1.34777 * 120.63191 * 126.38776 * 16 15 14 18 18 O 1.21290 * 120.00150 * 179.97438 * 17 16 15 19 19 C 1.50697 * 120.00147 * 0.02562 * 17 16 15 20 20 H 1.09001 * 112.50556 * 309.67820 * 19 17 16 21 21 C 1.52883 * 113.17000 * 179.76653 * 19 17 16 22 22 C 1.51437 * 84.73848 * 244.77852 * 21 19 17 23 23 C 1.38961 * 145.49630 * 179.97438 * 22 21 19 24 24 C 1.37940 * 120.35851 * 179.97438 * 23 22 21 25 25 C 1.38460 * 120.14742 * 0.02863 * 24 23 22 26 26 F 1.35103 * 120.15089 * 179.97438 * 25 24 23 27 27 C 1.38400 * 119.70067 * 359.97200 * 25 24 23 28 28 C 1.38204 * 120.09777 * 0.02562 * 27 25 24 29 29 C 1.46935 * 118.76815 * 306.41107 * 16 15 14 30 30 H 1.08991 * 109.46788 * 85.43487 * 1 2 3 31 31 H 1.08995 * 109.46946 * 205.44126 * 1 2 3 32 32 H 1.09003 * 109.47018 * 325.43467 * 1 2 3 33 33 H 0.96997 * 120.00585 * 180.02562 * 6 5 3 34 34 H 1.09006 * 109.45828 * 301.33609 * 13 11 2 35 35 H 1.09001 * 109.46012 * 61.30050 * 13 11 2 36 36 H 1.08998 * 109.49977 * 58.58187 * 14 13 11 37 37 H 1.09000 * 109.49626 * 178.65003 * 14 13 11 38 38 H 1.08996 * 109.58663 * 174.42515 * 15 14 13 39 39 H 1.09002 * 109.58155 * 294.70446 * 15 14 13 40 40 H 1.08996 * 113.98368 * 358.72197 * 21 19 17 41 41 H 1.08999 * 113.98530 * 130.82839 * 21 19 17 42 42 H 1.08001 * 119.82369 * 0.02562 * 23 22 21 43 43 H 1.08000 * 119.92338 * 179.97438 * 24 23 22 44 44 H 1.07991 * 119.94955 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.56553 * 293.78943 * 29 16 15 46 46 H 1.09002 * 109.62066 * 173.35569 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1811 1.2140 0.3193 5 6 1.5182 2.3519 -0.4104 6 7 0.3899 2.2869 -1.0849 7 14 2.2698 4.0135 -0.0055 8 1 3.2801 4.3641 -1.0358 9 1 2.9229 3.9499 1.3267 10 1 1.2039 5.0472 0.0146 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8271 -2.0719 1.2494 14 6 2.6165 -3.3829 1.2677 15 6 2.2497 -4.2123 0.0329 16 7 2.4665 -3.3940 -1.1678 17 6 3.2384 -3.8455 -2.1763 18 8 3.4093 -3.1606 -3.1626 19 6 3.8881 -5.2017 -2.0789 20 1 4.4249 -5.3407 -1.1405 21 6 4.7224 -5.5587 -3.3093 22 6 3.7008 -6.6583 -3.5104 23 6 3.3105 -7.7268 -4.3085 24 6 2.1838 -8.4575 -3.9931 25 6 1.4323 -8.1299 -2.8773 26 9 0.3285 -8.8451 -2.5687 27 6 1.8171 -7.0665 -2.0794 28 6 2.9462 -6.3353 -2.3964 29 6 1.8267 -2.0738 -1.2489 30 1 -0.3632 0.0818 -1.0243 31 1 -0.3633 -0.9280 0.4415 32 1 -0.3633 0.8463 0.5831 33 1 -0.0513 3.1017 -1.3720 34 1 2.0677 -1.4907 2.1396 35 1 0.7594 -2.2912 1.2367 36 1 3.6843 -3.1648 1.2553 37 1 2.3700 -3.9434 2.1694 38 1 2.8802 -5.1002 -0.0112 39 1 1.2027 -4.5100 0.0907 40 1 4.7119 -4.7963 -4.0882 41 1 5.7235 -5.9211 -3.0758 42 1 3.8929 -7.9872 -5.1799 43 1 1.8867 -9.2863 -4.6186 44 1 1.2342 -6.8078 -1.2080 45 1 0.7445 -2.1950 -1.2976 46 1 2.1782 -1.5507 -2.1383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027544796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:53 Heat of formation + Delta-G solvation = -3.699562 kcal Electronic energy + Delta-G solvation = -28791.033469 eV Core-core repulsion = 24789.529488 eV Total energy + Delta-G solvation = -4001.503980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -49.92736 -42.27408 -40.48732 -38.85316 -36.81123 -36.05012 -33.98135 -32.83922 -31.91325 -30.66124 -28.60969 -28.07206 -26.99103 -25.72460 -24.98967 -23.42251 -23.07906 -21.96979 -20.74399 -19.83464 -18.87598 -18.62392 -18.16982 -17.62461 -17.14775 -16.82307 -16.57667 -16.18159 -16.17450 -15.74868 -15.35532 -15.32802 -15.11523 -14.94360 -14.59117 -14.38437 -14.17266 -13.92754 -13.75020 -13.68500 -13.32862 -13.02287 -12.86431 -12.75621 -12.73067 -12.51065 -12.38657 -12.22395 -12.15308 -12.06478 -11.78638 -11.71569 -11.51385 -11.40666 -10.98786 -10.64513 -9.98756 -9.72566 -9.48833 -8.81105 -7.85588 -5.30971 0.03884 0.16370 1.44723 1.45091 1.47546 1.55021 1.92461 2.49536 2.51743 2.78907 3.23572 3.27656 3.37267 3.50147 3.53922 3.62591 3.97235 3.98181 4.06273 4.07587 4.22092 4.25164 4.30940 4.36306 4.48514 4.57920 4.63386 4.68473 4.76391 4.82771 4.87925 4.92506 4.95216 5.02206 5.06480 5.08802 5.16100 5.19822 5.24612 5.41422 5.46757 5.55210 5.57208 5.61086 5.68806 5.84396 6.29195 6.41409 7.09234 7.12710 7.84763 8.26675 9.17747 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002798 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.356789 B =10004.409049 C =10383.239049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.609 5.609 3 C -0.266 4.266 4 H 0.070 0.930 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.286 1.286 9 H -0.269 1.269 10 H -0.292 1.292 11 C 0.168 3.832 12 H 0.048 0.952 13 C -0.124 4.124 14 C -0.122 4.122 15 C 0.102 3.898 16 N -0.600 5.600 17 C 0.517 3.483 18 O -0.585 6.585 19 C -0.053 4.053 20 H 0.156 0.844 21 C -0.055 4.055 22 C -0.132 4.132 23 C -0.074 4.074 24 C -0.143 4.143 25 C 0.080 3.920 26 F -0.143 7.143 27 C -0.123 4.123 28 C -0.110 4.110 29 C 0.113 3.887 30 H -0.004 1.004 31 H 0.036 0.964 32 H 0.018 0.982 33 H 0.248 0.752 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.160 0.840 44 H 0.144 0.856 45 H 0.054 0.946 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -25.805 1.179 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.331 5.331 3 C -0.396 4.396 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.213 1.213 9 H -0.194 1.194 10 H -0.218 1.218 11 C 0.060 3.940 12 H 0.067 0.933 13 C -0.163 4.163 14 C -0.160 4.160 15 C -0.019 4.019 16 N -0.332 5.332 17 C 0.306 3.694 18 O -0.466 6.466 19 C -0.073 4.073 20 H 0.173 0.827 21 C -0.091 4.091 22 C -0.132 4.132 23 C -0.092 4.092 24 C -0.161 4.161 25 C 0.061 3.939 26 F -0.122 7.122 27 C -0.141 4.141 28 C -0.111 4.111 29 C -0.012 4.012 30 H 0.014 0.986 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.155 0.845 42 H 0.173 0.827 43 H 0.178 0.822 44 H 0.162 0.838 45 H 0.072 0.928 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.002 -25.339 0.647 26.297 hybrid contribution -0.572 1.513 -0.181 1.627 sum 6.430 -23.826 0.466 24.683 Atomic orbital electron populations 1.20477 0.82616 0.96219 0.97188 1.44200 1.02150 1.01102 1.85657 1.19544 0.96980 0.86124 1.36933 0.91270 1.25746 0.98648 1.01730 0.98784 1.70258 1.20527 1.27199 1.40442 0.85273 0.77138 0.79615 0.78311 1.21322 1.19390 1.21826 1.20783 0.95036 0.85122 0.93049 0.93344 1.21931 1.00468 0.96441 0.97438 1.21894 1.00513 0.95141 0.98453 1.22106 1.03107 0.93919 0.82768 1.48284 1.48080 1.17769 1.19033 1.20870 0.78391 0.88220 0.81941 1.90692 1.63137 1.59891 1.32860 1.21410 0.94750 0.86967 1.04209 0.82656 1.21810 0.97969 0.93826 0.95534 1.22632 0.98393 0.96532 0.95675 1.20668 0.95732 0.93129 0.99663 1.21280 0.95649 1.02387 0.96829 1.17535 0.85902 0.93331 0.97166 1.91497 1.50922 1.76826 1.92963 1.20215 0.97145 0.95107 1.01675 1.21023 0.95217 0.96387 0.98444 1.22003 0.96292 0.82898 0.99985 0.98575 0.94613 0.96304 0.94281 0.92330 0.92087 0.91288 0.87346 0.86794 0.90295 0.88882 0.84507 0.82670 0.82192 0.83799 0.92779 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.92 127.77 1.01 10.00 16 2 N -0.61 -30.88 2.82 -702.35 -1.98 -32.86 16 3 C -0.27 -14.98 9.61 84.03 0.81 -14.17 16 4 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 5 C -0.05 -3.11 5.04 84.86 0.43 -2.68 16 6 N -0.94 -57.06 10.70 21.65 0.23 -56.82 16 7 Si 0.97 46.18 29.58 68.60 2.03 48.21 16 8 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 C 0.17 6.80 2.74 45.07 0.12 6.93 16 12 H 0.05 2.09 7.85 -2.39 -0.02 2.07 16 13 C -0.12 -3.73 5.13 30.62 0.16 -3.57 16 14 C -0.12 -2.41 6.08 30.67 0.19 -2.23 16 15 C 0.10 1.98 6.24 86.37 0.54 2.52 16 16 N -0.60 -17.81 2.97 -818.88 -2.43 -20.25 16 17 C 0.52 15.80 7.20 87.66 0.63 16.43 16 18 O -0.59 -23.91 15.08 -3.06 -0.05 -23.96 16 19 C -0.05 -1.02 2.82 -14.64 -0.04 -1.06 16 20 H 0.16 1.89 7.27 -2.39 -0.02 1.87 16 21 C -0.05 -0.96 7.91 30.04 0.24 -0.72 16 22 C -0.13 -2.42 7.32 -21.76 -0.16 -2.58 16 23 C -0.07 -1.13 10.04 22.37 0.22 -0.91 16 24 C -0.14 -2.24 10.01 22.25 0.22 -2.02 16 25 C 0.08 1.52 7.31 22.36 0.16 1.69 16 26 F -0.14 -2.95 17.27 44.97 0.78 -2.17 16 27 C -0.12 -2.32 10.02 22.30 0.22 -2.10 16 28 C -0.11 -2.13 6.62 -19.82 -0.13 -2.26 16 29 C 0.11 4.50 5.79 86.36 0.50 5.00 16 30 H 0.00 -0.23 7.44 -2.39 -0.02 -0.25 16 31 H 0.04 1.49 6.46 -2.39 -0.02 1.47 16 32 H 0.02 1.00 7.17 -2.39 -0.02 0.98 16 33 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.06 1.83 6.71 -2.39 -0.02 1.81 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.46 5.59 -2.39 -0.01 1.44 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 2.13 7.02 -2.39 -0.02 2.11 16 41 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 44 H 0.14 2.30 8.06 -2.92 -0.02 2.28 16 45 H 0.05 2.19 7.51 -2.39 -0.02 2.17 16 46 H 0.04 2.20 7.01 -2.39 -0.02 2.18 16 Total: -1.00 -75.33 368.57 4.70 -70.64 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 0.99 Total: 8.96 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.13 Total: 8.26 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.18 Total: -109.93 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.33 4.70 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027544796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.939 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds