Wall clock time and date at job start Tue Mar 31 2020 16:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99788 * 2 1 4 4 O 1.21282 * 120.00039 * 184.53568 * 3 2 1 5 5 C 1.50697 * 120.00083 * 4.53547 * 3 2 1 6 6 C 1.50705 * 115.54995 * 293.88297 * 5 3 2 7 7 C 1.38247 * 119.97302 * 149.98039 * 6 5 3 8 8 C 1.38198 * 120.02298 * 179.76802 * 7 6 5 9 9 C 1.38460 * 119.97571 * 0.50431 * 8 7 6 10 10 F 1.35098 * 120.02751 * 179.76888 * 9 8 7 11 11 C 1.38464 * 119.94754 * 359.74850 * 9 8 7 12 12 C 1.38200 * 119.97538 * 359.97438 * 11 9 8 13 13 C 1.53000 * 117.49856 * 148.21704 * 5 3 2 14 14 C 1.52999 * 117.49916 * 79.55449 * 5 3 2 15 15 C 1.46496 * 120.00142 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.91378 * 179.15679 * 15 2 1 17 17 C 1.55156 * 111.00277 * 55.25960 * 15 2 1 18 18 C 1.54325 * 103.10145 * 277.51608 * 17 15 2 19 19 N 1.47020 * 107.27050 * 337.71891 * 18 17 15 20 20 C 1.36938 * 125.64961 * 178.97882 * 19 18 17 21 21 H 1.07998 * 120.00178 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99865 * 359.97037 * 20 19 18 23 23 N 1.31618 * 119.99874 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00081 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47260 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47143 * 120.00153 * 24 22 20 27 27 H 1.48495 * 109.47539 * 240.00398 * 24 22 20 28 28 C 1.47420 * 108.70563 * 358.93918 * 19 18 17 29 29 H 1.09000 * 109.47224 * 215.18069 * 1 2 3 30 30 H 1.09005 * 109.47695 * 335.17706 * 1 2 3 31 31 H 1.08998 * 109.47282 * 95.17431 * 1 2 3 32 32 H 1.07997 * 119.98880 * 0.02562 * 7 6 5 33 33 H 1.07995 * 120.01258 * 180.25680 * 8 7 6 34 34 H 1.07996 * 120.01321 * 179.97438 * 11 9 8 35 35 H 1.08000 * 119.98683 * 179.97438 * 12 11 9 36 36 H 1.09005 * 117.49906 * 359.97438 * 13 5 3 37 37 H 1.09006 * 117.50175 * 145.02061 * 13 5 3 38 38 H 1.09002 * 117.49835 * 214.97446 * 14 5 3 39 39 H 1.08999 * 117.49777 * 359.97438 * 14 5 3 40 40 H 1.08996 * 110.72347 * 159.06710 * 17 15 2 41 41 H 1.09004 * 110.72326 * 35.96708 * 17 15 2 42 42 H 1.08997 * 109.88443 * 97.13782 * 18 17 15 43 43 H 1.09001 * 109.88486 * 218.30271 * 18 17 15 44 44 H 0.97005 * 119.99962 * 179.97438 * 23 22 20 45 45 H 1.08993 * 110.37157 * 142.96570 * 28 19 18 46 46 H 1.09003 * 110.37024 * 265.29563 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3488 1.1689 -0.0831 5 6 1.3888 2.4703 0.1032 6 6 0.5042 2.8057 -1.0699 7 6 -0.6393 3.5590 -0.8795 8 6 -1.4487 3.8713 -1.9552 9 6 -1.1195 3.4207 -3.2224 10 9 -1.9125 3.7214 -4.2740 11 6 0.0232 2.6619 -3.4110 12 6 0.8342 2.3557 -2.3347 13 6 2.0837 3.6306 0.8185 14 6 0.9159 2.9051 1.4918 15 6 2.1975 -1.2687 0.0006 16 1 3.2737 -1.0966 -0.0145 17 6 1.7607 -2.1635 -1.1893 18 6 0.4752 -2.8383 -0.6661 19 7 0.5254 -2.7934 0.8026 20 6 -0.4390 -3.2716 1.6491 21 1 -0.3074 -3.1911 2.7180 22 6 -1.5857 -3.8596 1.1333 23 7 -1.7459 -3.9580 -0.1694 24 14 -2.9009 -4.5125 2.2880 25 1 -2.4833 -4.2826 3.6944 26 1 -4.1811 -3.8054 2.0304 27 1 -3.0842 -5.9679 2.0572 28 6 1.7863 -2.1493 1.2131 29 1 -0.3634 -0.8399 0.5921 30 1 -0.3635 0.9327 0.4314 31 1 -0.3634 -0.0927 -1.0234 32 1 -0.8980 3.9070 0.1096 33 1 -2.3397 4.4632 -1.8069 34 1 0.2807 2.3096 -4.3989 35 1 1.7254 1.7635 -2.4816 36 1 3.0832 3.4513 1.2149 37 1 1.9007 4.6367 0.4410 38 1 -0.0348 3.4342 1.5568 39 1 1.1469 2.2485 2.3306 40 1 2.5242 -2.9088 -1.4120 41 1 1.5471 -1.5574 -2.0697 42 1 -0.4001 -2.2962 -1.0239 43 1 0.4361 -3.8739 -1.0041 44 1 -2.5471 -4.3693 -0.5299 45 1 1.6259 -1.5289 2.0947 46 1 2.5497 -2.9016 1.4113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033130920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:46 Heat of formation + Delta-G solvation = 14.408056 kcal Electronic energy + Delta-G solvation = -29682.777193 eV Core-core repulsion = 25682.058418 eV Total energy + Delta-G solvation = -4000.718775 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -48.98337 -40.74508 -38.96898 -37.63791 -36.19191 -34.22158 -32.13528 -31.31036 -30.29923 -29.34130 -27.91386 -26.08229 -25.04851 -24.04574 -23.28136 -22.56349 -21.97775 -20.10808 -19.96875 -18.50797 -17.94550 -17.19144 -16.93323 -16.34888 -16.13933 -15.68018 -15.42676 -15.02217 -14.70280 -14.53894 -14.29190 -13.81873 -13.71482 -13.43790 -13.31718 -12.96623 -12.79302 -12.63726 -12.16968 -11.99278 -11.92215 -11.72297 -11.64402 -11.55519 -11.17290 -10.98368 -10.94768 -10.81700 -10.76724 -10.62487 -10.25786 -10.14702 -9.94865 -9.70630 -9.40770 -9.25591 -8.73568 -8.56419 -8.19567 -6.85772 -5.78448 -3.12672 0.94819 1.08427 2.70901 3.19110 3.31098 3.34912 3.41395 3.43319 3.84515 4.11667 4.31423 4.43667 4.49330 4.61394 4.72451 4.77786 4.85565 5.05925 5.28831 5.34231 5.38761 5.42099 5.46850 5.53751 5.67539 5.71042 5.76147 5.77636 5.85204 5.88319 5.95443 5.99224 6.10575 6.16753 6.20352 6.31229 6.34973 6.49628 6.51467 6.60204 6.71975 6.78348 7.06414 7.50710 7.55970 7.76358 7.80595 8.17494 8.42237 9.14766 9.74380 10.39855 11.32550 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.004146 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.711257 B = 6751.116984 C = 7717.545482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.576 5.576 3 C 0.548 3.452 4 O -0.550 6.550 5 C -0.117 4.117 6 C -0.043 4.043 7 C -0.089 4.089 8 C -0.148 4.148 9 C 0.094 3.906 10 F -0.142 7.142 11 C -0.145 4.145 12 C -0.076 4.076 13 C -0.134 4.134 14 C -0.155 4.155 15 C 0.121 3.879 16 H 0.099 0.901 17 C -0.155 4.155 18 C 0.175 3.825 19 N -0.602 5.602 20 C -0.231 4.231 21 H 0.078 0.922 22 C -0.004 4.004 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.126 3.874 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.042 0.958 44 H 0.252 0.748 45 H 0.043 0.957 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 16.207 -2.363 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.306 5.306 3 C 0.335 3.665 4 O -0.429 6.429 5 C -0.120 4.120 6 C -0.044 4.044 7 C -0.107 4.107 8 C -0.167 4.167 9 C 0.074 3.926 10 F -0.120 7.120 11 C -0.164 4.164 12 C -0.094 4.094 13 C -0.172 4.172 14 C -0.192 4.192 15 C 0.017 3.983 16 H 0.117 0.883 17 C -0.194 4.194 18 C 0.050 3.950 19 N -0.329 5.329 20 C -0.359 4.359 21 H 0.096 0.904 22 C -0.201 4.201 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 C -0.001 4.001 29 H 0.135 0.865 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.823 16.066 -2.463 16.697 hybrid contribution -1.071 -0.526 0.191 1.208 sum 2.752 15.540 -2.273 15.945 Atomic orbital electron populations 1.22229 0.78189 1.04469 1.02683 1.47603 1.07842 1.04746 1.70439 1.19282 0.86876 0.83892 0.76448 1.90655 1.13904 1.87180 1.51185 1.20048 1.02814 0.95577 0.93585 1.18796 0.94638 0.98312 0.92640 1.20859 0.93321 0.97642 0.98884 1.21069 1.01634 1.02834 0.91149 1.17718 0.90886 0.99812 0.84147 1.91495 1.72931 1.91613 1.55983 1.21110 0.94499 1.00120 1.00657 1.20847 0.99186 0.98221 0.91192 1.23102 0.98108 0.95140 1.00823 1.23222 0.99567 1.03077 0.93355 1.22376 0.96084 0.82435 0.97369 0.88268 1.23230 1.00812 0.98396 0.96973 1.21237 0.92013 0.98548 0.83181 1.44571 1.17149 1.69139 1.02049 1.19068 0.95872 1.32091 0.88843 0.90417 1.24779 0.98349 1.01013 0.95973 1.69974 1.27881 1.49157 1.09590 0.86088 0.81725 0.78462 0.79745 1.20532 1.21745 1.21774 1.21974 0.89921 0.93548 0.94635 0.86463 0.92297 0.93291 0.84679 0.84619 0.84595 0.85202 0.87416 0.87850 0.87450 0.87656 0.91403 0.91996 0.93047 0.94013 0.93738 0.93898 0.95167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 7.86 59.84 0.47 1.62 16 2 N -0.58 -9.73 2.91 -171.19 -0.50 -10.22 16 3 C 0.55 8.84 5.77 -10.99 -0.06 8.78 16 4 O -0.55 -10.33 16.10 5.56 0.09 -10.24 16 5 C -0.12 -1.48 1.27 -156.81 -0.20 -1.68 16 6 C -0.04 -0.52 4.02 -104.61 -0.42 -0.94 16 7 C -0.09 -0.92 9.35 -39.59 -0.37 -1.29 16 8 C -0.15 -1.54 10.03 -39.51 -0.40 -1.94 16 9 C 0.09 1.11 7.30 -39.42 -0.29 0.82 16 10 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 11 C -0.15 -1.71 10.03 -39.51 -0.40 -2.11 16 12 C -0.08 -0.96 9.32 -39.59 -0.37 -1.33 16 13 C -0.13 -1.41 9.73 -26.69 -0.26 -1.67 16 14 C -0.16 -1.60 8.82 -26.69 -0.24 -1.83 16 15 C 0.12 2.19 3.70 -65.52 -0.24 1.95 16 16 H 0.10 1.77 7.02 -51.93 -0.36 1.40 16 17 C -0.15 -2.86 6.39 -24.90 -0.16 -3.02 16 18 C 0.17 3.98 4.31 -3.06 -0.01 3.97 16 19 N -0.60 -14.22 1.92 -169.77 -0.33 -14.55 16 20 C -0.23 -6.01 9.90 -15.06 -0.15 -6.16 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 23 N -0.92 -25.60 10.31 55.49 0.57 -25.03 16 24 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 C 0.13 2.53 6.52 -2.27 -0.01 2.51 16 29 H 0.12 2.45 5.00 -51.93 -0.26 2.19 16 30 H 0.06 0.88 5.56 -51.93 -0.29 0.59 16 31 H 0.05 0.87 7.79 -51.93 -0.40 0.46 16 32 H 0.14 1.08 5.95 -52.49 -0.31 0.77 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.13 1.74 7.33 -52.49 -0.38 1.36 16 36 H 0.11 1.22 8.01 -51.93 -0.42 0.80 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 0.87 6.10 -51.93 -0.32 0.55 16 39 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.27 6.11 -51.93 -0.32 0.96 16 43 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -29.47 366.67 -9.20 -38.68 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.38 Total: 3.89 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.20 Total: -2.54 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.25 Total: -49.80 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.47 -9.20 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033130920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.085 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds