Wall clock time and date at job start Tue Mar 31 2020 16:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 119.99788 * 2 1 4 4 O 1.21282 * 120.00039 * 184.53568 * 3 2 1 5 5 C 1.50697 * 120.00083 * 4.53547 * 3 2 1 6 6 C 1.50705 * 115.54995 * 293.88297 * 5 3 2 7 7 C 1.38247 * 119.97302 * 149.98039 * 6 5 3 8 8 C 1.38198 * 120.02298 * 179.76802 * 7 6 5 9 9 C 1.38460 * 119.97571 * 0.50431 * 8 7 6 10 10 F 1.35098 * 120.02751 * 179.76888 * 9 8 7 11 11 C 1.38464 * 119.94754 * 359.74850 * 9 8 7 12 12 C 1.38200 * 119.97538 * 359.97438 * 11 9 8 13 13 C 1.53000 * 117.49856 * 148.21704 * 5 3 2 14 14 C 1.52999 * 117.49916 * 79.55449 * 5 3 2 15 15 C 1.46496 * 120.00142 * 179.97438 * 2 1 3 16 16 H 1.09002 * 110.91378 * 179.15679 * 15 2 1 17 17 C 1.55156 * 111.00277 * 55.25960 * 15 2 1 18 18 C 1.54325 * 103.10145 * 277.51608 * 17 15 2 19 19 N 1.47020 * 107.27050 * 337.71891 * 18 17 15 20 20 C 1.36938 * 125.64961 * 178.97882 * 19 18 17 21 21 H 1.07998 * 120.00178 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99865 * 359.97037 * 20 19 18 23 23 N 1.31618 * 119.99874 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00081 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47260 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47143 * 120.00153 * 24 22 20 27 27 H 1.48495 * 109.47539 * 240.00398 * 24 22 20 28 28 C 1.47420 * 108.70563 * 358.93918 * 19 18 17 29 29 H 1.09000 * 109.47224 * 215.18069 * 1 2 3 30 30 H 1.09005 * 109.47695 * 335.17706 * 1 2 3 31 31 H 1.08998 * 109.47282 * 95.17431 * 1 2 3 32 32 H 1.07997 * 119.98880 * 0.02562 * 7 6 5 33 33 H 1.07995 * 120.01258 * 180.25680 * 8 7 6 34 34 H 1.07996 * 120.01321 * 179.97438 * 11 9 8 35 35 H 1.08000 * 119.98683 * 179.97438 * 12 11 9 36 36 H 1.09005 * 117.49906 * 359.97438 * 13 5 3 37 37 H 1.09006 * 117.50175 * 145.02061 * 13 5 3 38 38 H 1.09002 * 117.49835 * 214.97446 * 14 5 3 39 39 H 1.08999 * 117.49777 * 359.97438 * 14 5 3 40 40 H 1.08996 * 110.72347 * 159.06710 * 17 15 2 41 41 H 1.09004 * 110.72326 * 35.96708 * 17 15 2 42 42 H 1.08997 * 109.88443 * 97.13782 * 18 17 15 43 43 H 1.09001 * 109.88486 * 218.30271 * 18 17 15 44 44 H 0.97005 * 119.99962 * 179.97438 * 23 22 20 45 45 H 1.08993 * 110.37157 * 142.96570 * 28 19 18 46 46 H 1.09003 * 110.37024 * 265.29563 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3488 1.1689 -0.0831 5 6 1.3888 2.4703 0.1032 6 6 0.5042 2.8057 -1.0699 7 6 -0.6393 3.5590 -0.8795 8 6 -1.4487 3.8713 -1.9552 9 6 -1.1195 3.4207 -3.2224 10 9 -1.9125 3.7214 -4.2740 11 6 0.0232 2.6619 -3.4110 12 6 0.8342 2.3557 -2.3347 13 6 2.0837 3.6306 0.8185 14 6 0.9159 2.9051 1.4918 15 6 2.1975 -1.2687 0.0006 16 1 3.2737 -1.0966 -0.0145 17 6 1.7607 -2.1635 -1.1893 18 6 0.4752 -2.8383 -0.6661 19 7 0.5254 -2.7934 0.8026 20 6 -0.4390 -3.2716 1.6491 21 1 -0.3074 -3.1911 2.7180 22 6 -1.5857 -3.8596 1.1333 23 7 -1.7459 -3.9580 -0.1694 24 14 -2.9009 -4.5125 2.2880 25 1 -2.4833 -4.2826 3.6944 26 1 -4.1811 -3.8054 2.0304 27 1 -3.0842 -5.9679 2.0572 28 6 1.7863 -2.1493 1.2131 29 1 -0.3634 -0.8399 0.5921 30 1 -0.3635 0.9327 0.4314 31 1 -0.3634 -0.0927 -1.0234 32 1 -0.8980 3.9070 0.1096 33 1 -2.3397 4.4632 -1.8069 34 1 0.2807 2.3096 -4.3989 35 1 1.7254 1.7635 -2.4816 36 1 3.0832 3.4513 1.2149 37 1 1.9007 4.6367 0.4410 38 1 -0.0348 3.4342 1.5568 39 1 1.1469 2.2485 2.3306 40 1 2.5242 -2.9088 -1.4120 41 1 1.5471 -1.5574 -2.0697 42 1 -0.4001 -2.2962 -1.0239 43 1 0.4361 -3.8739 -1.0041 44 1 -2.5471 -4.3693 -0.5299 45 1 1.6259 -1.5289 2.0947 46 1 2.5497 -2.9016 1.4113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033130920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:44 Heat of formation + Delta-G solvation = 0.607701 kcal Electronic energy + Delta-G solvation = -29683.375621 eV Core-core repulsion = 25682.058418 eV Total energy + Delta-G solvation = -4001.317203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -49.90146 -41.88045 -40.15039 -39.04520 -37.23615 -35.82122 -33.94423 -32.17499 -31.25812 -31.06361 -29.55606 -27.51875 -26.61702 -25.44381 -24.14003 -23.52837 -22.94364 -21.94995 -21.27603 -19.75214 -18.92407 -18.85496 -18.29866 -17.53909 -17.22405 -16.66291 -16.59658 -16.53768 -16.01424 -15.78821 -15.57745 -15.56294 -14.80518 -14.59534 -14.28076 -14.16070 -14.05052 -13.82558 -13.66583 -13.45699 -13.38557 -13.10828 -13.04644 -12.82170 -12.79370 -12.42427 -12.34905 -12.03877 -11.97439 -11.97104 -11.80150 -11.63893 -11.58310 -11.51018 -10.71241 -10.70156 -10.10363 -9.70246 -9.45449 -8.78640 -7.81684 -5.16752 0.06609 0.23614 1.46939 1.48699 1.50449 1.59327 1.94608 2.41168 2.51475 2.94323 3.24926 3.37863 3.42042 3.42318 3.65604 3.71034 3.88166 3.89604 3.92064 3.96951 4.02096 4.24185 4.28582 4.41116 4.44123 4.60043 4.62134 4.70069 4.71711 4.74304 4.88139 4.88941 4.95318 4.99049 5.01858 5.02799 5.13435 5.18727 5.24713 5.26065 5.45364 5.49931 5.59614 5.67573 5.80675 5.86604 6.20629 6.46217 7.11084 7.13007 7.78540 8.43218 9.28234 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011158 B = 0.004146 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.711257 B = 6751.116984 C = 7717.545482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.579 5.579 3 C 0.550 3.450 4 O -0.579 6.579 5 C -0.138 4.138 6 C -0.047 4.047 7 C -0.083 4.083 8 C -0.142 4.142 9 C 0.077 3.923 10 F -0.148 7.148 11 C -0.152 4.152 12 C -0.093 4.093 13 C -0.123 4.123 14 C -0.140 4.140 15 C 0.131 3.869 16 H 0.107 0.893 17 C -0.141 4.141 18 C 0.189 3.811 19 N -0.614 5.614 20 C -0.235 4.235 21 H 0.081 0.919 22 C -0.056 4.056 23 N -0.947 5.947 24 Si 0.970 3.030 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.298 1.298 28 C 0.127 3.873 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.004 0.996 44 H 0.246 0.754 45 H 0.044 0.956 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 18.406 -0.991 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.309 5.309 3 C 0.339 3.661 4 O -0.459 6.459 5 C -0.141 4.141 6 C -0.047 4.047 7 C -0.100 4.100 8 C -0.160 4.160 9 C 0.058 3.942 10 F -0.127 7.127 11 C -0.170 4.170 12 C -0.111 4.111 13 C -0.160 4.160 14 C -0.177 4.177 15 C 0.027 3.973 16 H 0.125 0.875 17 C -0.180 4.180 18 C 0.064 3.936 19 N -0.340 5.340 20 C -0.363 4.363 21 H 0.099 0.901 22 C -0.249 4.249 23 N -0.595 5.595 24 Si 0.800 3.200 25 H -0.192 1.192 26 H -0.219 1.219 27 H -0.226 1.226 28 C 0.001 3.999 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.160 0.840 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.146 0.854 38 H 0.156 0.844 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.022 0.978 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.442 18.286 -1.072 18.638 hybrid contribution -0.873 -1.194 -0.228 1.496 sum 2.569 17.092 -1.300 17.333 Atomic orbital electron populations 1.21946 0.78242 1.04131 1.01459 1.47616 1.07655 1.04804 1.70809 1.19856 0.86679 0.84643 0.74957 1.90634 1.15338 1.87699 1.52271 1.19990 1.04270 0.94424 0.95380 1.18831 0.95221 0.98792 0.91894 1.21136 0.92085 0.96636 1.00193 1.21384 1.02210 1.02116 0.90331 1.17938 0.91004 1.00480 0.84766 1.91477 1.73053 1.91723 1.56434 1.21198 0.94672 1.00272 1.00904 1.20788 0.99149 0.99109 0.92092 1.23196 0.97754 0.95449 0.99642 1.23388 1.00862 1.02283 0.91185 1.22208 0.96536 0.82778 0.95826 0.87488 1.23092 0.98937 0.98643 0.97364 1.20921 0.93289 0.96276 0.83073 1.44715 1.17944 1.69160 1.02210 1.19366 0.96355 1.31225 0.89383 0.90115 1.25481 1.00347 1.01902 0.97209 1.70170 1.28052 1.50229 1.11097 0.85130 0.79172 0.77063 0.78682 1.19159 1.21884 1.22571 1.22061 0.88545 0.93781 0.95523 0.89987 0.89796 0.94345 0.81640 0.82144 0.84031 0.86831 0.88513 0.85432 0.84428 0.88362 0.89932 0.91079 0.95506 0.97820 0.94490 0.93733 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.89 7.86 127.77 1.00 3.89 16 2 N -0.58 -19.18 2.91 -813.90 -2.37 -21.55 16 3 C 0.55 17.15 5.77 87.66 0.51 17.66 16 4 O -0.58 -21.32 16.10 -3.04 -0.05 -21.37 16 5 C -0.14 -3.17 1.27 -53.67 -0.07 -3.24 16 6 C -0.05 -1.02 4.02 -19.86 -0.08 -1.10 16 7 C -0.08 -1.41 9.35 22.26 0.21 -1.20 16 8 C -0.14 -2.54 10.03 22.31 0.22 -2.31 16 9 C 0.08 1.72 7.30 22.38 0.16 1.89 16 10 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 11 C -0.15 -3.51 10.03 22.31 0.22 -3.29 16 12 C -0.09 -2.30 9.32 22.26 0.21 -2.09 16 13 C -0.12 -2.22 9.73 30.62 0.30 -1.92 16 14 C -0.14 -2.39 8.82 30.62 0.27 -2.12 16 15 C 0.13 4.65 3.70 46.55 0.17 4.83 16 16 H 0.11 3.71 7.02 -2.39 -0.02 3.69 16 17 C -0.14 -5.21 6.39 31.78 0.20 -5.01 16 18 C 0.19 8.88 4.31 86.73 0.37 9.26 16 19 N -0.61 -29.35 1.92 -691.04 -1.32 -30.68 16 20 C -0.23 -12.31 9.90 84.03 0.83 -11.48 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.06 -3.01 5.49 84.86 0.47 -2.54 16 23 N -0.95 -54.25 10.31 21.65 0.22 -54.03 16 24 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 C 0.13 5.04 6.52 87.03 0.57 5.60 16 29 H 0.08 3.45 5.00 -2.39 -0.01 3.44 16 30 H 0.08 2.36 5.56 -2.38 -0.01 2.35 16 31 H 0.04 1.37 7.79 -2.39 -0.02 1.35 16 32 H 0.17 1.75 5.95 -2.91 -0.02 1.73 16 33 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.11 3.11 7.33 -2.91 -0.02 3.09 16 36 H 0.10 1.99 8.01 -2.38 -0.02 1.97 16 37 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.14 1.50 6.10 -2.39 -0.01 1.48 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.03 1.38 6.11 -2.39 -0.01 1.37 16 43 H 0.00 0.19 7.50 -2.39 -0.02 0.17 16 44 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 45 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -65.08 366.67 5.85 -59.23 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.00 Total: 18.39 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.57 Total: 6.82 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.47 Total: -106.25 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -65.08 5.85 -59.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033130920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.839 kcal (2) G-P(sol) polarization free energy of solvation -65.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds