Wall clock time and date at job start Tue Mar 31 2020 16:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 120.00206 * 2 1 4 4 O 1.21278 * 120.00029 * 184.47138 * 3 2 1 5 5 C 1.50699 * 119.99874 * 4.46713 * 3 2 1 6 6 H 1.08999 * 110.27015 * 24.94624 * 5 3 2 7 7 C 1.54342 * 110.30187 * 262.86870 * 5 3 2 8 8 C 1.54604 * 102.27640 * 267.39947 * 7 5 3 9 9 C 1.51380 * 105.18533 * 333.63584 * 8 7 5 10 10 C 1.38457 * 130.36263 * 197.17615 * 9 8 7 11 11 C 1.38325 * 120.19844 * 180.02562 * 10 9 8 12 12 F 1.35095 * 120.06467 * 180.02562 * 11 10 9 13 13 C 1.38475 * 119.87505 * 359.97438 * 11 10 9 14 14 C 1.38065 * 119.91322 * 359.97438 * 13 11 10 15 15 C 1.38226 * 109.75745 * 17.21278 * 9 8 7 16 16 C 1.46495 * 119.99587 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.77845 * 237.14678 * 16 2 1 18 18 C 1.55159 * 110.72442 * 113.90746 * 16 2 1 19 19 C 1.54910 * 101.58061 * 277.13850 * 18 16 2 20 20 N 1.47425 * 104.92682 * 322.93081 * 19 18 16 21 21 C 1.36942 * 125.64513 * 204.15145 * 20 19 18 22 22 H 1.07999 * 119.99767 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99772 * 0.03415 * 21 20 19 24 24 N 1.31615 * 120.00324 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99510 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47250 * 89.99624 * 25 23 21 27 27 H 1.48504 * 109.47110 * 209.99819 * 25 23 21 28 28 H 1.48507 * 109.47167 * 329.99455 * 25 23 21 29 29 C 1.47287 * 108.55996 * 24.15820 * 20 19 18 30 30 H 1.08992 * 109.47466 * 264.61692 * 1 2 3 31 31 H 1.09004 * 109.46796 * 24.61342 * 1 2 3 32 32 H 1.08993 * 109.47491 * 144.61148 * 1 2 3 33 33 H 1.08997 * 110.82430 * 25.65682 * 7 5 3 34 34 H 1.09003 * 110.82184 * 149.21176 * 7 5 3 35 35 H 1.08995 * 110.28719 * 214.71247 * 8 7 5 36 36 H 1.09002 * 110.30367 * 92.56574 * 8 7 5 37 37 H 1.08010 * 119.90303 * 0.06728 * 10 9 8 38 38 H 1.08000 * 120.04565 * 179.97438 * 13 11 10 39 39 H 1.08001 * 119.87820 * 180.02562 * 14 13 11 40 40 H 1.08995 * 111.00441 * 159.05842 * 18 16 2 41 41 H 1.09002 * 111.02908 * 35.22617 * 18 16 2 42 42 H 1.08999 * 110.36865 * 81.82523 * 19 18 16 43 43 H 1.08995 * 110.36469 * 204.03698 * 19 18 16 44 44 H 0.97000 * 119.99772 * 180.02562 * 24 23 21 45 45 H 1.09002 * 109.85668 * 239.50163 * 29 20 19 46 46 H 1.08999 * 110.00404 * 118.42771 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3490 1.1687 -0.0819 5 6 1.3889 2.4703 0.1017 6 1 0.4284 2.3158 0.5932 7 6 1.1809 3.0793 -1.3012 8 6 2.4111 4.0047 -1.4436 9 6 2.7968 4.3725 -0.0266 10 6 3.5985 5.3970 0.4472 11 6 3.8131 5.5408 1.8062 12 9 4.5954 6.5417 2.2656 13 6 3.2237 4.6574 2.6948 14 6 2.4234 3.6365 2.2220 15 6 2.2095 3.4907 0.8612 16 6 2.1974 -1.2687 0.0006 17 1 2.8695 -1.3269 0.8567 18 6 2.9813 -1.4508 -1.3260 19 6 1.8814 -2.0096 -2.2629 20 7 1.0683 -2.8943 -1.4087 21 6 0.3008 -3.9408 -1.8458 22 1 -0.2609 -4.5313 -1.1372 23 6 0.2451 -4.2427 -3.1996 24 7 0.9295 -3.5229 -4.0631 25 14 -0.8012 -5.6707 -3.7956 26 1 -2.1716 -5.1868 -4.1008 27 1 -0.1961 -6.2498 -5.0219 28 1 -0.8677 -6.7110 -2.7379 29 6 1.2204 -2.4633 -0.0085 30 1 -0.3634 -0.0964 1.0230 31 1 -0.3633 0.9343 -0.4280 32 1 -0.3634 -0.8377 -0.5951 33 1 1.1880 2.3025 -2.0658 34 1 0.2560 3.6548 -1.3405 35 1 2.1479 4.8991 -2.0081 36 1 3.2286 3.4747 -1.9325 37 1 4.0572 6.0865 -0.2462 38 1 3.3897 4.7668 3.7563 39 1 1.9637 2.9481 2.9157 40 1 3.7929 -2.1682 -1.2049 41 1 3.3581 -0.4957 -1.6919 42 1 1.2708 -1.1975 -2.6577 43 1 2.3299 -2.5769 -3.0783 44 1 0.8903 -3.7337 -5.0091 45 1 1.6274 -3.2797 0.5880 46 1 0.2552 -2.1558 0.3938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033270144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:42 Heat of formation + Delta-G solvation = -12.507851 kcal Electronic energy + Delta-G solvation = -29007.742066 eV Core-core repulsion = 25005.856129 eV Total energy + Delta-G solvation = -4001.885936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.04888 -40.93536 -39.24683 -37.22346 -35.37812 -34.52096 -32.27024 -31.60099 -29.49366 -28.99562 -28.19865 -27.06654 -26.60259 -24.27384 -23.20759 -22.39828 -21.30623 -20.38156 -19.91865 -18.46560 -17.28373 -17.16531 -16.98165 -16.57389 -16.31777 -15.74145 -15.67056 -15.01884 -14.78854 -14.51586 -14.40064 -13.86036 -13.69150 -13.55641 -13.04755 -12.91701 -12.78426 -12.61690 -12.40898 -12.18176 -12.09569 -11.83077 -11.69550 -11.44409 -11.38203 -11.21266 -11.02271 -10.97624 -10.91853 -10.70347 -10.20599 -10.11746 -9.96867 -9.68428 -9.39372 -9.09256 -8.69226 -8.55759 -8.25416 -6.89151 -5.69143 -3.12158 0.95528 1.06273 2.79494 3.14510 3.36124 3.41551 3.43653 3.49459 3.90662 4.19031 4.34545 4.44250 4.62799 4.71349 4.80286 4.90386 5.04752 5.05106 5.31542 5.34944 5.39444 5.41331 5.46855 5.48450 5.55576 5.64309 5.66726 5.76256 5.77902 5.86730 5.89688 5.91020 5.98958 6.07848 6.10642 6.33173 6.34135 6.37622 6.49961 6.67951 6.71048 6.74990 7.03660 7.50749 7.58195 7.67975 7.83753 8.32230 8.42424 9.17015 9.77405 10.42437 11.33878 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029089 B = 0.002648 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.330325 B =10571.813270 C =10798.308173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.594 5.594 3 C 0.522 3.478 4 O -0.532 6.532 5 C -0.072 4.072 6 H 0.103 0.897 7 C -0.107 4.107 8 C -0.082 4.082 9 C -0.048 4.048 10 C -0.145 4.145 11 C 0.099 3.901 12 F -0.141 7.141 13 C -0.156 4.156 14 C -0.069 4.069 15 C -0.084 4.084 16 C 0.135 3.865 17 H 0.075 0.925 18 C -0.152 4.152 19 C 0.156 3.844 20 N -0.602 5.602 21 C -0.225 4.225 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.009 0.991 43 H 0.104 0.896 44 H 0.252 0.748 45 H 0.033 0.967 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 17.180 10.078 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.327 5.327 3 C 0.308 3.692 4 O -0.409 6.409 5 C -0.093 4.093 6 H 0.121 0.879 7 C -0.144 4.144 8 C -0.119 4.119 9 C -0.048 4.048 10 C -0.164 4.164 11 C 0.080 3.920 12 F -0.120 7.120 13 C -0.175 4.175 14 C -0.087 4.087 15 C -0.085 4.085 16 C 0.032 3.968 17 H 0.093 0.907 18 C -0.191 4.191 19 C 0.031 3.969 20 N -0.329 5.329 21 C -0.353 4.353 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.745 3.255 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.001 4.001 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.027 0.973 43 H 0.122 0.878 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.725 17.067 9.854 19.721 hybrid contribution -0.468 -0.582 -0.097 0.753 sum 0.257 16.485 9.757 19.158 Atomic orbital electron populations 1.21955 0.79768 1.03995 1.01753 1.47836 1.06967 1.05550 1.72354 1.20154 0.87812 0.84369 0.76827 1.90683 1.13920 1.87123 1.49151 1.20844 0.98917 0.92078 0.97446 0.87941 1.22311 0.98509 0.99014 0.94612 1.21144 0.98441 0.99715 0.92558 1.20354 0.94613 0.93350 0.96509 1.20484 1.01804 1.00427 0.93676 1.17478 0.94137 0.87975 0.92396 1.91488 1.72367 1.58712 1.89441 1.20947 1.00265 0.96340 0.99954 1.20436 0.97127 0.96871 0.94272 1.20108 0.99184 0.96048 0.93148 1.22020 0.93726 0.82204 0.98863 0.90738 1.23334 0.99008 1.00849 0.95907 1.21897 0.89295 0.92267 0.93429 1.44595 1.54266 1.34221 0.99804 1.19045 1.19865 1.04885 0.91500 0.90493 1.24792 1.00445 0.99456 0.95813 1.69821 1.44594 1.40760 1.01571 0.86085 0.79559 0.81710 0.78184 1.21649 1.21669 1.20710 1.21693 0.96057 0.92926 0.89430 0.92966 0.91480 0.88661 0.89438 0.89616 0.90079 0.89025 0.84918 0.84625 0.85270 0.91587 0.91231 0.97258 0.87781 0.93716 0.94873 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 8.61 59.85 0.52 1.42 16 2 N -0.59 -9.33 3.02 -171.84 -0.52 -9.85 16 3 C 0.52 8.07 6.29 -10.99 -0.07 8.00 16 4 O -0.53 -10.04 15.10 5.56 0.08 -9.96 16 5 C -0.07 -0.84 2.34 -91.89 -0.21 -1.05 16 6 H 0.10 0.98 6.51 -51.93 -0.34 0.64 16 7 C -0.11 -1.10 6.44 -25.18 -0.16 -1.26 16 8 C -0.08 -0.85 6.77 -26.71 -0.18 -1.03 16 9 C -0.05 -0.56 6.14 -104.21 -0.64 -1.20 16 10 C -0.15 -1.63 10.02 -39.47 -0.40 -2.02 16 11 C 0.10 1.14 7.30 -39.46 -0.29 0.85 16 12 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 13 C -0.16 -1.65 10.03 -39.56 -0.40 -2.05 16 14 C -0.07 -0.76 10.04 -39.54 -0.40 -1.15 16 15 C -0.08 -1.01 4.97 -104.19 -0.52 -1.53 16 16 C 0.13 2.44 3.32 -66.10 -0.22 2.22 16 17 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.15 -3.08 6.47 -24.58 -0.16 -3.24 16 19 C 0.16 3.74 5.86 -2.53 -0.01 3.72 16 20 N -0.60 -14.67 3.28 -169.86 -0.56 -15.23 16 21 C -0.22 -5.99 10.28 -15.06 -0.15 -6.15 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -26.19 10.09 55.49 0.56 -25.63 16 25 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.13 2.46 6.08 -2.92 -0.02 2.44 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.72 6.20 -51.93 -0.32 0.40 16 32 H 0.09 1.56 6.24 -51.93 -0.32 1.24 16 33 H 0.09 1.00 7.89 -51.93 -0.41 0.59 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.43 6.64 -51.93 -0.34 1.09 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 2.86 5.87 -51.93 -0.30 2.55 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.65 5.68 -51.93 -0.29 0.35 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -31.30 366.52 -9.84 -41.13 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.53 Total: 1.57 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.41 Total: -2.39 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.52 Total: -50.71 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.30 -9.84 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033270144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.625 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds