Wall clock time and date at job start Tue Mar 31 2020 16:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 120.00206 * 2 1 4 4 O 1.21278 * 120.00029 * 184.47138 * 3 2 1 5 5 C 1.50699 * 119.99874 * 4.46713 * 3 2 1 6 6 H 1.08999 * 110.27015 * 24.94624 * 5 3 2 7 7 C 1.54342 * 110.30187 * 262.86870 * 5 3 2 8 8 C 1.54604 * 102.27640 * 267.39947 * 7 5 3 9 9 C 1.51380 * 105.18533 * 333.63584 * 8 7 5 10 10 C 1.38457 * 130.36263 * 197.17615 * 9 8 7 11 11 C 1.38325 * 120.19844 * 180.02562 * 10 9 8 12 12 F 1.35095 * 120.06467 * 180.02562 * 11 10 9 13 13 C 1.38475 * 119.87505 * 359.97438 * 11 10 9 14 14 C 1.38065 * 119.91322 * 359.97438 * 13 11 10 15 15 C 1.38226 * 109.75745 * 17.21278 * 9 8 7 16 16 C 1.46495 * 119.99587 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.77845 * 237.14678 * 16 2 1 18 18 C 1.55159 * 110.72442 * 113.90746 * 16 2 1 19 19 C 1.54910 * 101.58061 * 277.13850 * 18 16 2 20 20 N 1.47425 * 104.92682 * 322.93081 * 19 18 16 21 21 C 1.36942 * 125.64513 * 204.15145 * 20 19 18 22 22 H 1.07999 * 119.99767 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99772 * 0.03415 * 21 20 19 24 24 N 1.31615 * 120.00324 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99510 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47250 * 89.99624 * 25 23 21 27 27 H 1.48504 * 109.47110 * 209.99819 * 25 23 21 28 28 H 1.48507 * 109.47167 * 329.99455 * 25 23 21 29 29 C 1.47287 * 108.55996 * 24.15820 * 20 19 18 30 30 H 1.08992 * 109.47466 * 264.61692 * 1 2 3 31 31 H 1.09004 * 109.46796 * 24.61342 * 1 2 3 32 32 H 1.08993 * 109.47491 * 144.61148 * 1 2 3 33 33 H 1.08997 * 110.82430 * 25.65682 * 7 5 3 34 34 H 1.09003 * 110.82184 * 149.21176 * 7 5 3 35 35 H 1.08995 * 110.28719 * 214.71247 * 8 7 5 36 36 H 1.09002 * 110.30367 * 92.56574 * 8 7 5 37 37 H 1.08010 * 119.90303 * 0.06728 * 10 9 8 38 38 H 1.08000 * 120.04565 * 179.97438 * 13 11 10 39 39 H 1.08001 * 119.87820 * 180.02562 * 14 13 11 40 40 H 1.08995 * 111.00441 * 159.05842 * 18 16 2 41 41 H 1.09002 * 111.02908 * 35.22617 * 18 16 2 42 42 H 1.08999 * 110.36865 * 81.82523 * 19 18 16 43 43 H 1.08995 * 110.36469 * 204.03698 * 19 18 16 44 44 H 0.97000 * 119.99772 * 180.02562 * 24 23 21 45 45 H 1.09002 * 109.85668 * 239.50163 * 29 20 19 46 46 H 1.08999 * 110.00404 * 118.42771 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3490 1.1687 -0.0819 5 6 1.3889 2.4703 0.1017 6 1 0.4284 2.3158 0.5932 7 6 1.1809 3.0793 -1.3012 8 6 2.4111 4.0047 -1.4436 9 6 2.7968 4.3725 -0.0266 10 6 3.5985 5.3970 0.4472 11 6 3.8131 5.5408 1.8062 12 9 4.5954 6.5417 2.2656 13 6 3.2237 4.6574 2.6948 14 6 2.4234 3.6365 2.2220 15 6 2.2095 3.4907 0.8612 16 6 2.1974 -1.2687 0.0006 17 1 2.8695 -1.3269 0.8567 18 6 2.9813 -1.4508 -1.3260 19 6 1.8814 -2.0096 -2.2629 20 7 1.0683 -2.8943 -1.4087 21 6 0.3008 -3.9408 -1.8458 22 1 -0.2609 -4.5313 -1.1372 23 6 0.2451 -4.2427 -3.1996 24 7 0.9295 -3.5229 -4.0631 25 14 -0.8012 -5.6707 -3.7956 26 1 -2.1716 -5.1868 -4.1008 27 1 -0.1961 -6.2498 -5.0219 28 1 -0.8677 -6.7110 -2.7379 29 6 1.2204 -2.4633 -0.0085 30 1 -0.3634 -0.0964 1.0230 31 1 -0.3633 0.9343 -0.4280 32 1 -0.3634 -0.8377 -0.5951 33 1 1.1880 2.3025 -2.0658 34 1 0.2560 3.6548 -1.3405 35 1 2.1479 4.8991 -2.0081 36 1 3.2286 3.4747 -1.9325 37 1 4.0572 6.0865 -0.2462 38 1 3.3897 4.7668 3.7563 39 1 1.9637 2.9481 2.9157 40 1 3.7929 -2.1682 -1.2049 41 1 3.3581 -0.4957 -1.6919 42 1 1.2708 -1.1975 -2.6577 43 1 2.3299 -2.5769 -3.0783 44 1 0.8903 -3.7337 -5.0091 45 1 1.6274 -3.2797 0.5880 46 1 0.2552 -2.1558 0.3938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033270144.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:41 Heat of formation + Delta-G solvation = -28.799161 kcal Electronic energy + Delta-G solvation = -29008.448510 eV Core-core repulsion = 25005.856129 eV Total energy + Delta-G solvation = -4002.592380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.92351 -41.96223 -40.42699 -38.70514 -36.29384 -36.01340 -34.01713 -32.55452 -31.25808 -29.87215 -29.47756 -28.36061 -27.92295 -26.07663 -24.04632 -23.52809 -22.14924 -22.04684 -21.35817 -19.70077 -18.92412 -18.32649 -18.12061 -17.56433 -17.47886 -16.90770 -16.61795 -16.59703 -16.05987 -15.81683 -15.45537 -15.20852 -14.87448 -14.59098 -14.44456 -14.04991 -14.00054 -13.89064 -13.69013 -13.48775 -13.25341 -13.10403 -12.92768 -12.80042 -12.72485 -12.55490 -12.37367 -12.20953 -12.06654 -12.01621 -11.93165 -11.80267 -11.76374 -11.52187 -10.72901 -10.66912 -9.91409 -9.56717 -9.44069 -8.87746 -7.74769 -5.19496 0.09020 0.24671 1.49408 1.50766 1.59368 1.62004 2.00559 2.51181 2.58623 3.07113 3.34455 3.36379 3.48577 3.54867 3.71860 3.88202 3.94581 3.98810 4.06349 4.11015 4.22645 4.25342 4.26845 4.34907 4.58323 4.60550 4.64755 4.67460 4.72761 4.76004 4.86544 4.92462 4.99629 5.01611 5.04641 5.07008 5.10154 5.12923 5.18121 5.27427 5.47797 5.53469 5.58791 5.66076 5.80649 5.89360 6.29962 6.48369 7.11291 7.21556 7.78377 8.43216 9.27062 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029089 B = 0.002648 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.330325 B =10571.813270 C =10798.308173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.598 5.598 3 C 0.520 3.480 4 O -0.572 6.572 5 C -0.064 4.064 6 H 0.131 0.869 7 C -0.104 4.104 8 C -0.082 4.082 9 C -0.060 4.060 10 C -0.153 4.153 11 C 0.085 3.915 12 F -0.146 7.146 13 C -0.157 4.157 14 C -0.074 4.074 15 C -0.099 4.099 16 C 0.146 3.854 17 H 0.086 0.914 18 C -0.140 4.140 19 C 0.169 3.831 20 N -0.619 5.619 21 C -0.232 4.232 22 H 0.086 0.914 23 C -0.067 4.067 24 N -0.950 5.950 25 Si 0.979 3.021 26 H -0.285 1.285 27 H -0.299 1.299 28 H -0.269 1.269 29 C 0.125 3.875 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.063 0.937 41 H 0.064 0.936 42 H -0.012 1.012 43 H 0.066 0.934 44 H 0.245 0.755 45 H 0.039 0.961 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 17.976 11.960 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.330 5.330 3 C 0.309 3.691 4 O -0.451 6.451 5 C -0.085 4.085 6 H 0.149 0.851 7 C -0.142 4.142 8 C -0.119 4.119 9 C -0.060 4.060 10 C -0.172 4.172 11 C 0.066 3.934 12 F -0.124 7.124 13 C -0.175 4.175 14 C -0.092 4.092 15 C -0.100 4.100 16 C 0.042 3.958 17 H 0.104 0.896 18 C -0.179 4.179 19 C 0.044 3.956 20 N -0.345 5.345 21 C -0.361 4.361 22 H 0.104 0.896 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.808 3.192 26 H -0.212 1.212 27 H -0.226 1.226 28 H -0.194 1.194 29 C 0.000 4.000 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.006 0.994 43 H 0.084 0.916 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.876 17.871 11.777 21.420 hybrid contribution 0.062 -0.796 -0.644 1.026 sum -0.814 17.075 11.133 20.400 Atomic orbital electron populations 1.22078 0.78024 1.04106 1.03252 1.47916 1.08008 1.04804 1.72261 1.20839 0.87546 0.85294 0.75454 1.90665 1.15858 1.87728 1.50838 1.20867 0.99455 0.89666 0.98552 0.85104 1.22369 0.99815 0.98737 0.93249 1.21157 0.97915 1.00545 0.92265 1.20540 0.94846 0.93607 0.97034 1.20682 1.01756 1.00696 0.94019 1.17701 0.94533 0.88306 0.92849 1.91475 1.72548 1.58937 1.89484 1.21222 0.99574 0.95765 1.00985 1.20712 0.96989 0.97145 0.94306 1.20294 0.99729 0.96200 0.93773 1.21793 0.93322 0.83143 0.97538 0.89572 1.23129 0.97977 1.00128 0.96695 1.21522 0.89710 0.91082 0.93292 1.44786 1.54013 1.33906 1.01827 1.19438 1.19570 1.05231 0.91826 0.89603 1.25609 1.02082 1.02076 0.96180 1.70077 1.46209 1.42364 1.01299 0.85066 0.77823 0.79002 0.77340 1.21245 1.22588 1.19393 1.21831 0.97518 0.93629 0.86975 0.89907 0.88772 0.91930 0.91064 0.86438 0.87708 0.91166 0.83683 0.82567 0.83332 0.91835 0.91749 0.99431 0.91581 0.94528 0.94341 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.60 8.61 127.77 1.10 2.70 16 2 N -0.60 -17.75 3.02 -815.97 -2.46 -20.22 16 3 C 0.52 15.32 6.29 87.66 0.55 15.87 16 4 O -0.57 -21.36 15.10 -3.02 -0.05 -21.40 16 5 C -0.06 -1.34 2.34 -11.61 -0.03 -1.37 16 6 H 0.13 1.95 6.51 -2.39 -0.02 1.93 16 7 C -0.10 -1.92 6.44 31.60 0.20 -1.72 16 8 C -0.08 -1.61 6.77 30.61 0.21 -1.41 16 9 C -0.06 -1.32 6.14 -19.60 -0.12 -1.44 16 10 C -0.15 -3.25 10.02 22.34 0.22 -3.03 16 11 C 0.09 1.85 7.30 22.35 0.16 2.01 16 12 F -0.15 -3.26 17.27 44.97 0.78 -2.49 16 13 C -0.16 -3.00 10.03 22.29 0.22 -2.78 16 14 C -0.07 -1.44 10.04 22.30 0.22 -1.21 16 15 C -0.10 -2.18 4.97 -19.58 -0.10 -2.28 16 16 C 0.15 5.12 3.32 46.18 0.15 5.28 16 17 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 18 C -0.14 -5.78 6.47 31.99 0.21 -5.58 16 19 C 0.17 8.38 5.86 86.86 0.51 8.89 16 20 N -0.62 -30.28 3.28 -691.31 -2.27 -32.55 16 21 C -0.23 -12.36 10.28 84.03 0.86 -11.50 16 22 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 23 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 24 N -0.95 -55.81 10.09 21.65 0.22 -55.60 16 25 Si 0.98 44.41 29.55 68.60 2.03 46.44 16 26 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 29 C 0.13 4.78 6.08 86.68 0.53 5.30 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.71 6.20 -2.38 -0.01 1.70 16 32 H 0.06 1.95 6.24 -2.39 -0.01 1.94 16 33 H 0.07 1.57 7.89 -2.39 -0.02 1.55 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.06 2.72 6.64 -2.39 -0.02 2.71 16 42 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 43 H 0.07 3.81 5.87 -2.39 -0.01 3.80 16 44 H 0.24 14.10 8.31 -92.71 -0.77 13.32 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.06 1.97 5.68 -2.39 -0.01 1.95 16 Total: -1.00 -69.49 366.52 4.61 -64.88 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.99 Total: 16.43 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.38 Total: 4.52 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -4.51 Total: -108.37 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -69.49 4.61 -64.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033270144.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.078 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds