Wall clock time and date at job start Tue Mar 31 2020 16:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00502 * 2 1 4 4 O 1.21276 * 120.00530 * 184.96130 * 3 2 1 5 5 C 1.50708 * 119.99536 * 4.96368 * 3 2 1 6 6 H 1.09000 * 110.26484 * 325.63965 * 5 3 2 7 7 C 1.54341 * 110.30352 * 87.72030 * 5 3 2 8 8 C 1.54340 * 102.39555 * 92.56990 * 7 5 3 9 9 C 1.51372 * 105.17176 * 26.35101 * 8 7 5 10 10 C 1.38466 * 130.36439 * 162.83502 * 9 8 7 11 11 C 1.38325 * 120.19467 * 179.97438 * 10 9 8 12 12 F 1.35095 * 120.06248 * 180.02562 * 11 10 9 13 13 C 1.38484 * 119.87816 * 359.97438 * 11 10 9 14 14 C 1.38062 * 119.90957 * 0.02562 * 13 11 10 15 15 C 1.38320 * 120.31724 * 0.02562 * 14 13 11 16 16 C 1.46503 * 119.99741 * 179.97438 * 2 1 3 17 17 H 1.08999 * 110.63790 * 182.67202 * 16 2 1 18 18 C 1.55152 * 110.72040 * 59.53247 * 16 2 1 19 19 C 1.55393 * 101.36439 * 277.03876 * 18 16 2 20 20 N 1.47417 * 104.87586 * 323.02024 * 19 18 16 21 21 C 1.36936 * 125.65161 * 204.16529 * 20 19 18 22 22 H 1.07998 * 120.00593 * 179.97438 * 21 20 19 23 23 C 1.38814 * 119.99449 * 359.96212 * 21 20 19 24 24 N 1.31613 * 120.00510 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99768 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47252 * 89.99553 * 25 23 21 27 27 H 1.48507 * 109.47147 * 209.99413 * 25 23 21 28 28 H 1.48499 * 109.47227 * 329.99357 * 25 23 21 29 29 C 1.47025 * 108.70299 * 24.12832 * 20 19 18 30 30 H 1.08996 * 109.47709 * 211.69111 * 1 2 3 31 31 H 1.09004 * 109.46698 * 91.69258 * 1 2 3 32 32 H 1.09004 * 109.46836 * 331.69567 * 1 2 3 33 33 H 1.09005 * 110.81983 * 210.79881 * 7 5 3 34 34 H 1.08996 * 110.82131 * 334.14173 * 7 5 3 35 35 H 1.08998 * 110.30305 * 145.28450 * 8 7 5 36 36 H 1.09010 * 110.29935 * 267.33082 * 8 7 5 37 37 H 1.08001 * 119.90344 * 359.94715 * 10 9 8 38 38 H 1.07997 * 120.04183 * 180.02562 * 13 11 10 39 39 H 1.08001 * 119.87337 * 180.02562 * 14 13 11 40 40 H 1.08998 * 111.00632 * 35.20991 * 18 16 2 41 41 H 1.08996 * 111.00847 * 159.06221 * 18 16 2 42 42 H 1.08993 * 110.34300 * 204.16385 * 19 18 16 43 43 H 1.09001 * 110.43800 * 81.91869 * 19 18 16 44 44 H 0.97001 * 120.01027 * 180.02562 * 24 23 21 45 45 H 1.09004 * 109.88250 * 239.52437 * 29 20 19 46 46 H 1.09000 * 110.00945 * 118.43971 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3483 1.1691 -0.0908 5 6 1.3897 2.4699 0.1129 6 1 0.4291 2.3983 -0.3972 7 6 1.1820 2.8414 1.5965 8 6 2.4101 3.7286 1.8909 9 6 2.7983 4.3239 0.5544 10 6 3.6013 5.4119 0.2566 11 6 3.8182 5.7769 -1.0599 12 9 4.6026 6.8386 -1.3474 13 6 3.2307 5.0513 -2.0827 14 6 2.4301 3.9665 -1.7853 15 6 2.2109 3.6003 -0.4696 16 6 2.1975 -1.2688 0.0006 17 1 3.2720 -1.0921 0.0480 18 6 1.8347 -2.1126 -1.2498 19 6 0.5181 -2.7959 -0.7867 20 7 0.7266 -3.0893 0.6429 21 6 0.0845 -4.0635 1.3597 22 1 0.3089 -4.1998 2.4072 23 6 -0.8552 -4.8757 0.7397 24 7 -1.1294 -4.7091 -0.5367 25 14 -1.7318 -6.2041 1.7176 26 1 -2.9726 -5.6444 2.3113 27 1 -2.0793 -7.3333 0.8178 28 1 -0.8405 -6.6908 2.8011 29 6 1.7390 -2.1634 1.1714 30 1 -0.3634 -0.8744 0.5398 31 1 -0.3633 -0.0304 -1.0273 32 1 -0.3633 0.9048 0.4873 33 1 0.2574 3.4031 1.7295 34 1 1.1851 1.9497 2.2233 35 1 2.1464 4.5181 2.5945 36 1 3.2259 3.1250 2.2891 37 1 4.0593 5.9775 1.0546 38 1 3.3986 5.3337 -3.1115 39 1 1.9725 3.4008 -2.5835 40 1 1.6633 -1.4737 -2.1161 41 1 2.6067 -2.8530 -1.4591 42 1 0.3539 -3.7185 -1.3433 43 1 -0.3273 -2.1201 -0.9158 44 1 -1.7863 -5.2763 -0.9699 45 1 2.5871 -2.7253 1.5628 46 1 1.3062 -1.5485 1.9605 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033270148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:09 Heat of formation + Delta-G solvation = -15.788895 kcal Electronic energy + Delta-G solvation = -28873.367961 eV Core-core repulsion = 24871.339748 eV Total energy + Delta-G solvation = -4002.028213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.05426 -40.95637 -39.24861 -37.37216 -35.46105 -34.41419 -32.25139 -31.62123 -29.41573 -28.97470 -28.23408 -27.55627 -26.16015 -24.37943 -23.23074 -22.41551 -21.33502 -20.28146 -20.06867 -18.57651 -17.42249 -17.16441 -17.00649 -16.63333 -16.29897 -15.74080 -15.41720 -15.11941 -14.76676 -14.57272 -14.38722 -13.83526 -13.78691 -13.59705 -13.08897 -13.03425 -12.65749 -12.50958 -12.35035 -12.18429 -11.98838 -11.80728 -11.74190 -11.61176 -11.45023 -11.27039 -11.08906 -11.00879 -10.93156 -10.85288 -10.34327 -10.16162 -9.90663 -9.59063 -9.49629 -9.10457 -8.72121 -8.57862 -8.27477 -6.90658 -5.71696 -3.13963 0.94991 1.05687 2.73523 3.13063 3.35339 3.41306 3.42848 3.48655 3.88826 4.16285 4.30851 4.43635 4.60858 4.70590 4.76715 4.87954 5.02118 5.02775 5.34613 5.37239 5.39535 5.40341 5.46538 5.49852 5.51909 5.60006 5.67566 5.74064 5.82231 5.84811 5.86511 5.90734 5.95192 6.07355 6.18443 6.28459 6.33283 6.36028 6.51771 6.56333 6.67302 6.70592 6.99739 7.42497 7.56673 7.68379 7.79639 8.29317 8.36897 9.15428 9.75902 10.40188 11.31620 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030142 B = 0.002561 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.723372 B =10931.418886 C =11234.580047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.592 5.592 3 C 0.521 3.479 4 O -0.540 6.540 5 C -0.072 4.072 6 H 0.105 0.895 7 C -0.106 4.106 8 C -0.082 4.082 9 C -0.052 4.052 10 C -0.145 4.145 11 C 0.099 3.901 12 F -0.141 7.141 13 C -0.155 4.155 14 C -0.066 4.066 15 C -0.082 4.082 16 C 0.126 3.874 17 H 0.098 0.902 18 C -0.155 4.155 19 C 0.147 3.853 20 N -0.602 5.602 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.282 1.282 29 C 0.128 3.872 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.020 0.980 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 19.398 -0.013 19.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.324 5.324 3 C 0.308 3.692 4 O -0.418 6.418 5 C -0.093 4.093 6 H 0.123 0.877 7 C -0.144 4.144 8 C -0.118 4.118 9 C -0.052 4.052 10 C -0.164 4.164 11 C 0.080 3.920 12 F -0.120 7.120 13 C -0.174 4.174 14 C -0.085 4.085 15 C -0.082 4.082 16 C 0.022 3.978 17 H 0.116 0.884 18 C -0.195 4.195 19 C 0.022 3.978 20 N -0.329 5.329 21 C -0.351 4.351 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.001 3.999 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.612 19.238 -0.090 19.784 hybrid contribution -0.403 -0.524 0.291 0.722 sum 4.209 18.714 0.201 19.183 Atomic orbital electron populations 1.22093 0.79123 1.03870 1.02300 1.47806 1.07321 1.05386 1.71899 1.20239 0.87781 0.84634 0.76520 1.90675 1.14079 1.87175 1.49843 1.20831 0.99149 0.91175 0.98164 0.87674 1.22261 0.98632 1.00425 0.93103 1.21085 0.98291 0.98739 0.93726 1.20396 0.94878 0.93524 0.96421 1.20467 1.01843 0.99064 0.95030 1.17478 0.94132 0.86779 0.93635 1.91488 1.72241 1.53992 1.94292 1.20958 1.00179 0.97191 0.99042 1.20387 0.96951 0.95542 0.95580 1.20096 0.99022 0.95838 0.93283 1.22139 0.96326 0.82130 0.97167 0.88415 1.23429 1.01725 0.98467 0.95832 1.22163 0.90235 1.00046 0.85315 1.44532 1.44819 1.36651 1.06868 1.19060 1.15633 1.07439 0.93014 0.90521 1.24773 0.99656 0.99826 0.96236 1.69792 1.36562 1.41391 1.09216 0.86087 0.79532 0.81265 0.78679 1.21643 1.21672 1.20729 1.21616 0.92919 0.91374 0.93985 0.88183 0.92577 0.92002 0.89520 0.89576 0.90024 0.89291 0.84964 0.84585 0.85226 0.92117 0.91148 0.87752 0.96172 0.93707 0.95006 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 8.04 59.85 0.48 1.47 16 2 N -0.59 -9.30 2.82 -171.84 -0.49 -9.78 16 3 C 0.52 7.91 6.70 -10.98 -0.07 7.84 16 4 O -0.54 -10.02 15.68 5.56 0.09 -9.93 16 5 C -0.07 -0.83 2.31 -91.88 -0.21 -1.04 16 6 H 0.11 1.03 6.68 -51.93 -0.35 0.68 16 7 C -0.11 -1.00 6.24 -25.33 -0.16 -1.16 16 8 C -0.08 -0.78 6.76 -26.85 -0.18 -0.96 16 9 C -0.05 -0.59 6.14 -104.12 -0.64 -1.23 16 10 C -0.15 -1.59 10.02 -39.47 -0.40 -1.98 16 11 C 0.10 1.13 7.30 -39.46 -0.29 0.84 16 12 F -0.14 -1.65 17.27 2.25 0.04 -1.61 16 13 C -0.15 -1.66 10.03 -39.56 -0.40 -2.06 16 14 C -0.07 -0.75 10.02 -39.62 -0.40 -1.14 16 15 C -0.08 -0.98 4.86 -104.17 -0.51 -1.49 16 16 C 0.13 2.26 3.56 -66.10 -0.24 2.02 16 17 H 0.10 1.80 7.01 -51.93 -0.36 1.43 16 18 C -0.16 -2.91 6.63 -24.32 -0.16 -3.07 16 19 C 0.15 3.32 5.04 -2.27 -0.01 3.31 16 20 N -0.60 -14.41 2.92 -169.77 -0.50 -14.91 16 21 C -0.22 -5.91 10.27 -15.06 -0.15 -6.06 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 24 N -0.92 -25.59 10.09 55.49 0.56 -25.03 16 25 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 29 C 0.13 2.58 6.13 -3.07 -0.02 2.56 16 30 H 0.10 1.78 5.46 -51.93 -0.28 1.49 16 31 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 32 H 0.06 0.68 6.01 -51.93 -0.31 0.37 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.86 7.89 -51.93 -0.41 0.45 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.10 2.73 5.87 -51.93 -0.31 2.43 16 43 H 0.02 0.46 5.68 -51.93 -0.29 0.17 16 44 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.03 0.53 7.85 -51.93 -0.41 0.12 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -30.51 364.57 -9.75 -40.26 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.48 Total: 1.74 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.45 Total: -2.50 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.42 Total: -49.72 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.51 -9.75 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033270148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.466 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds