Wall clock time and date at job start Tue Mar 31 2020 16:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 120.00110 * 2 1 4 4 O 1.21273 * 120.00377 * 184.93566 * 3 2 1 5 5 C 1.50700 * 119.99525 * 4.92993 * 3 2 1 6 6 C 1.50695 * 115.55330 * 293.63199 * 5 3 2 7 7 C 1.38262 * 119.98899 * 330.10738 * 6 5 3 8 8 C 1.38224 * 120.05060 * 179.97438 * 7 6 5 9 9 C 1.38217 * 120.02660 * 0.02562 * 8 7 6 10 10 C 1.38441 * 119.97588 * 359.97438 * 9 8 7 11 11 F 1.35102 * 120.02408 * 180.02562 * 10 9 8 12 12 C 1.38179 * 119.98459 * 149.83505 * 6 5 3 13 13 C 1.53007 * 117.49416 * 147.96629 * 5 3 2 14 14 C 1.52997 * 117.49744 * 79.30904 * 5 3 2 15 15 C 1.46500 * 120.00021 * 180.02562 * 2 1 3 16 16 H 1.09004 * 110.88521 * 189.28334 * 15 2 1 17 17 C 1.55151 * 111.00686 * 65.39901 * 15 2 1 18 18 C 1.54328 * 102.94236 * 277.38934 * 17 15 2 19 19 N 1.47022 * 107.26826 * 337.80649 * 18 17 15 20 20 C 1.36939 * 125.64571 * 178.95845 * 19 18 17 21 21 H 1.07993 * 119.99717 * 179.97438 * 20 19 18 22 22 C 1.38805 * 120.00104 * 359.97438 * 20 19 18 23 23 N 1.31628 * 120.00394 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00361 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47181 * 89.99799 * 24 22 20 26 26 H 1.48498 * 109.47726 * 210.00038 * 24 22 20 27 27 H 1.48505 * 109.46721 * 330.00233 * 24 22 20 28 28 C 1.47419 * 108.70475 * 358.94355 * 19 18 17 29 29 H 1.08996 * 109.46610 * 215.15579 * 1 2 3 30 30 H 1.09001 * 109.46633 * 335.15047 * 1 2 3 31 31 H 1.08995 * 109.47213 * 95.15734 * 1 2 3 32 32 H 1.08000 * 119.97407 * 359.97001 * 7 6 5 33 33 H 1.08004 * 119.98575 * 180.02562 * 8 7 6 34 34 H 1.08003 * 120.00876 * 180.02562 * 9 8 7 35 35 H 1.07997 * 120.01555 * 359.97438 * 12 6 5 36 36 H 1.08998 * 117.49728 * 359.97438 * 13 5 3 37 37 H 1.08998 * 117.50256 * 145.02428 * 13 5 3 38 38 H 1.09010 * 117.50016 * 214.97597 * 14 5 3 39 39 H 1.09003 * 117.49833 * 359.97036 * 14 5 3 40 40 H 1.09000 * 110.72402 * 35.75113 * 17 15 2 41 41 H 1.08996 * 110.72163 * 158.85087 * 17 15 2 42 42 H 1.09001 * 109.88135 * 97.22165 * 18 17 15 43 43 H 1.09000 * 109.88261 * 218.23493 * 18 17 15 44 44 H 0.96993 * 120.00053 * 179.97438 * 23 22 20 45 45 H 1.09008 * 110.36658 * 265.28669 * 28 19 18 46 46 H 1.08999 * 110.37008 * 142.96609 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3483 1.1692 -0.0904 5 6 1.3895 2.4699 0.1122 6 6 0.5025 2.8122 -1.0570 7 6 0.8306 2.3715 -2.3257 8 6 0.0176 2.6843 -3.3989 9 6 -1.1241 3.4387 -3.2049 10 6 -1.4537 3.8806 -1.9350 11 9 -2.5698 4.6176 -1.7441 12 6 -0.6414 3.5618 -0.8597 13 6 2.0864 3.6259 0.8326 14 6 0.9199 2.8970 1.5042 15 6 2.1975 -1.2687 -0.0006 16 1 3.2622 -1.1028 0.1638 17 6 1.9534 -2.0513 -1.3178 18 6 0.6093 -2.7620 -1.0537 19 7 0.4386 -2.8449 0.4043 20 6 -0.6382 -3.3891 1.0520 21 1 -0.6689 -3.4023 2.1314 22 6 -1.6903 -3.9236 0.3212 23 7 -1.6533 -3.9070 -0.9944 24 14 -3.1589 -4.6666 1.2048 25 1 -4.1811 -3.6147 1.4369 26 1 -3.7424 -5.7486 0.3718 27 1 -2.7206 -5.2271 2.5083 28 6 1.6187 -2.2454 1.0533 29 1 -0.3632 -0.8402 0.5917 30 1 -0.3632 0.9326 0.4319 31 1 -0.3633 -0.0924 -1.0235 32 1 1.7228 1.7824 -2.4784 33 1 0.2747 2.3392 -4.3895 34 1 -1.7594 3.6826 -4.0436 35 1 -0.9001 3.9019 0.1322 36 1 3.0867 3.4441 1.2257 37 1 1.9029 4.6341 0.4612 38 1 -0.0306 3.4261 1.5744 39 1 1.1525 2.2356 2.3388 40 1 1.8687 -1.3677 -2.1626 41 1 2.7491 -2.7764 -1.4887 42 1 -0.2067 -2.1861 -1.4903 43 1 0.6283 -3.7631 -1.4845 44 1 -2.3883 -4.2809 -1.5050 45 1 2.3496 -3.0162 1.2980 46 1 1.3232 -1.7030 1.9513 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033469550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:10 Heat of formation + Delta-G solvation = 14.724947 kcal Electronic energy + Delta-G solvation = -29785.929492 eV Core-core repulsion = 25785.224459 eV Total energy + Delta-G solvation = -4000.705033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.98338 -40.73957 -38.95230 -37.65350 -36.24344 -34.21493 -32.13628 -30.89048 -30.60318 -29.38171 -27.81397 -26.17035 -25.15235 -24.12768 -23.04022 -22.53726 -22.04842 -20.09937 -19.98861 -18.63132 -17.75174 -16.98730 -16.67204 -16.32160 -16.16923 -15.82530 -15.66381 -15.19871 -14.69937 -14.52017 -14.30885 -14.02906 -13.82088 -13.31258 -13.22597 -12.82061 -12.64124 -12.56750 -12.02170 -11.96098 -11.89142 -11.79587 -11.71958 -11.46006 -11.30204 -10.97404 -10.92859 -10.83403 -10.80095 -10.63143 -10.29327 -10.16849 -9.95149 -9.69293 -9.44888 -9.02605 -8.73123 -8.68643 -8.18308 -6.85219 -5.77781 -3.12220 1.00457 1.07420 2.69686 3.19051 3.33051 3.35545 3.41619 3.43034 3.83454 4.06355 4.32028 4.44047 4.51938 4.59613 4.75619 4.82188 4.99820 5.04675 5.22255 5.33021 5.40018 5.42495 5.46820 5.51394 5.67284 5.71443 5.75857 5.77727 5.86385 5.91383 5.95068 5.99739 6.18394 6.19586 6.24226 6.32197 6.35429 6.48493 6.51108 6.60684 6.75082 6.78783 7.05569 7.50932 7.57578 7.77457 7.80094 8.18206 8.41747 9.15158 9.74904 10.40283 11.33091 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.004349 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.245872 B = 6436.385406 C = 7559.324670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.577 5.577 3 C 0.549 3.451 4 O -0.549 6.549 5 C -0.119 4.119 6 C -0.005 4.005 7 C -0.115 4.115 8 C -0.082 4.082 9 C -0.157 4.157 10 C 0.102 3.898 11 F -0.141 7.141 12 C -0.153 4.153 13 C -0.133 4.133 14 C -0.156 4.156 15 C 0.123 3.877 16 H 0.097 0.903 17 C -0.155 4.155 18 C 0.177 3.823 19 N -0.602 5.602 20 C -0.232 4.232 21 H 0.077 0.923 22 C -0.003 4.003 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.126 3.874 29 H 0.112 0.888 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.252 0.748 45 H 0.032 0.968 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 15.725 -1.345 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.307 5.307 3 C 0.336 3.664 4 O -0.428 6.428 5 C -0.123 4.123 6 C -0.006 4.006 7 C -0.133 4.133 8 C -0.100 4.100 9 C -0.175 4.175 10 C 0.083 3.917 11 F -0.119 7.119 12 C -0.172 4.172 13 C -0.170 4.170 14 C -0.192 4.192 15 C 0.019 3.981 16 H 0.115 0.885 17 C -0.194 4.194 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.360 4.360 21 H 0.095 0.905 22 C -0.200 4.200 23 N -0.565 5.565 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.001 4.001 29 H 0.131 0.869 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.321 15.595 -1.445 16.247 hybrid contribution -1.227 -0.461 0.274 1.339 sum 3.094 15.134 -1.171 15.492 Atomic orbital electron populations 1.22156 0.78059 1.03854 1.03115 1.47629 1.07883 1.04731 1.70447 1.19221 0.86836 0.83801 0.76529 1.90654 1.13922 1.87135 1.51083 1.20079 1.02838 0.95828 0.93511 1.18524 0.93124 0.96110 0.92794 1.21065 1.00369 1.00099 0.91779 1.20983 0.93314 0.96267 0.99413 1.21149 0.99302 1.01184 0.95901 1.17573 0.84635 0.95199 0.94327 1.91499 1.49806 1.74620 1.96013 1.20931 0.95304 1.02080 0.98866 1.23102 0.98104 0.95148 1.00649 1.23229 0.99656 1.03106 0.93255 1.22278 0.95913 0.82532 0.97382 0.88483 1.23246 1.00969 0.98917 0.96274 1.21186 0.90896 0.98173 0.84491 1.44563 1.17447 1.69354 1.01527 1.19004 0.94431 1.31874 0.90698 0.90472 1.24776 0.98594 1.01055 0.95598 1.69967 1.32256 1.50395 1.03902 0.86168 0.82742 0.78679 0.78454 1.21574 1.21702 1.20725 1.21865 0.90580 0.93285 0.94334 0.86934 0.92497 0.92892 0.85478 0.84760 0.84753 0.84498 0.87309 0.87816 0.87464 0.87604 0.92072 0.91495 0.93215 0.94068 0.93711 0.95076 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 8.08 59.85 0.48 1.72 16 2 N -0.58 -9.77 2.91 -171.49 -0.50 -10.27 16 3 C 0.55 8.91 5.78 -10.98 -0.06 8.85 16 4 O -0.55 -10.31 16.15 5.56 0.09 -10.22 16 5 C -0.12 -1.55 1.26 -156.81 -0.20 -1.75 16 6 C -0.01 -0.06 4.01 -104.64 -0.42 -0.48 16 7 C -0.11 -1.47 9.32 -39.58 -0.37 -1.84 16 8 C -0.08 -0.91 10.04 -39.59 -0.40 -1.30 16 9 C -0.16 -1.72 10.03 -39.51 -0.40 -2.12 16 10 C 0.10 1.22 7.30 -39.42 -0.29 0.93 16 11 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 12 C -0.15 -1.78 9.34 -39.51 -0.37 -2.15 16 13 C -0.13 -1.43 9.74 -26.69 -0.26 -1.69 16 14 C -0.16 -1.65 8.83 -26.69 -0.24 -1.88 16 15 C 0.12 2.21 3.62 -65.79 -0.24 1.98 16 16 H 0.10 1.72 7.10 -51.93 -0.37 1.35 16 17 C -0.15 -2.88 6.55 -24.90 -0.16 -3.04 16 18 C 0.18 4.05 4.45 -3.06 -0.01 4.04 16 19 N -0.60 -14.17 1.92 -170.08 -0.33 -14.49 16 20 C -0.23 -6.03 9.73 -15.06 -0.15 -6.18 16 21 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 22 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 23 N -0.92 -25.63 10.31 55.49 0.57 -25.06 16 24 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.13 2.50 6.17 -2.53 -0.02 2.48 16 29 H 0.11 2.33 5.14 -51.93 -0.27 2.06 16 30 H 0.06 0.87 5.55 -51.93 -0.29 0.58 16 31 H 0.05 0.98 7.47 -51.93 -0.39 0.59 16 32 H 0.13 1.73 7.34 -52.49 -0.39 1.35 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.14 1.36 5.95 -52.49 -0.31 1.05 16 36 H 0.11 1.23 8.01 -51.93 -0.42 0.81 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.11 0.95 6.10 -51.92 -0.32 0.63 16 39 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.05 1.25 6.32 -51.93 -0.33 0.92 16 43 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 44 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.04 0.86 8.13 -51.93 -0.42 0.43 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -29.36 366.72 -9.19 -38.56 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.39 Total: 4.05 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.19 Total: -2.62 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.25 Total: -49.82 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.36 -9.19 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033469550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.283 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds