Wall clock time and date at job start Tue Mar 31 2020 16:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34774 * 119.99970 * 2 1 4 4 O 1.21277 * 120.00130 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00078 * 0.02562 * 3 2 1 6 6 H 1.08999 * 115.54972 * 34.32135 * 5 3 2 7 7 C 1.53004 * 117.49337 * 248.61885 * 5 3 2 8 8 C 1.52992 * 117.49998 * 179.97438 * 5 3 2 9 9 H 1.09008 * 117.49863 * 359.97112 * 8 5 3 10 10 C 1.50699 * 117.50045 * 214.97735 * 8 5 3 11 11 C 1.38219 * 120.00977 * 299.99432 * 10 8 5 12 12 C 1.38227 * 120.02402 * 179.74165 * 11 10 8 13 13 C 1.38262 * 120.05195 * 0.25898 * 12 11 10 14 14 C 1.38177 * 120.02487 * 359.97438 * 13 12 11 15 15 C 1.38438 * 120.01661 * 120.25203 * 10 8 5 16 16 F 1.35104 * 120.02404 * 359.97438 * 15 10 8 17 17 C 1.46497 * 119.99782 * 179.97438 * 2 1 3 18 18 H 1.08999 * 110.88248 * 176.11588 * 17 2 1 19 19 C 1.55153 * 111.00758 * 300.00244 * 17 2 1 20 20 C 1.54322 * 102.94322 * 153.57622 * 19 17 2 21 21 N 1.47019 * 107.27057 * 337.80756 * 20 19 17 22 22 C 1.36941 * 125.64887 * 178.95782 * 21 20 19 23 23 H 1.08004 * 120.00275 * 179.97438 * 22 21 20 24 24 C 1.38816 * 119.99990 * 359.97438 * 22 21 20 25 25 N 1.31616 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00209 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47045 * 89.99340 * 26 24 22 28 28 H 1.48492 * 109.47203 * 209.99512 * 26 24 22 29 29 H 1.48504 * 109.46934 * 329.99718 * 26 24 22 30 30 C 1.47423 * 108.70720 * 358.93928 * 21 20 19 31 31 H 1.09000 * 109.46743 * 89.99474 * 1 2 3 32 32 H 1.08996 * 109.47250 * 209.99665 * 1 2 3 33 33 H 1.08995 * 109.47099 * 330.00168 * 1 2 3 34 34 H 1.09003 * 117.49331 * 145.02282 * 7 5 3 35 35 H 1.08997 * 117.50238 * 0.02562 * 7 5 3 36 36 H 1.08002 * 119.99072 * 0.02773 * 11 10 8 37 37 H 1.07998 * 119.97011 * 180.23492 * 12 11 10 38 38 H 1.08004 * 119.99089 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.01256 * 179.97438 * 14 13 12 40 40 H 1.08999 * 110.71882 * 271.94275 * 19 17 2 41 41 H 1.09003 * 110.71867 * 35.03610 * 19 17 2 42 42 H 1.09004 * 109.88478 * 97.22374 * 20 19 17 43 43 H 1.09004 * 109.88403 * 218.38919 * 20 19 17 44 44 H 0.96997 * 120.00262 * 180.02562 * 25 24 22 45 45 H 1.08998 * 110.36778 * 265.29402 * 30 21 20 46 46 H 1.09004 * 110.36777 * 142.96571 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.4472 2.4733 0.5554 7 6 1.4603 3.3317 -1.2631 8 6 2.2075 3.7626 0.0012 9 1 3.2934 3.6676 0.0016 10 6 1.6576 4.9377 0.7680 11 6 0.4281 5.4703 0.4287 12 6 -0.0789 6.5447 1.1353 13 6 0.6454 7.0912 2.1786 14 6 1.8769 6.5635 2.5164 15 6 2.3861 5.4874 1.8089 16 9 3.5901 4.9706 2.1383 17 6 2.1975 -1.2687 0.0006 18 1 3.2717 -1.0972 -0.0685 19 6 1.8484 -2.1120 1.2553 20 6 2.1063 -3.5582 0.7825 21 7 2.0265 -3.5583 -0.6855 22 6 2.2165 -4.6464 -1.4950 23 1 2.1354 -4.5427 -2.5670 24 6 2.5134 -5.8826 -0.9378 25 7 2.6127 -6.0090 0.3685 26 14 2.7719 -7.3670 -2.0420 27 1 4.2071 -7.4661 -2.4102 28 1 2.3598 -8.5980 -1.3210 29 1 1.9545 -7.2169 -3.2726 30 6 1.7075 -2.1933 -1.1418 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 0.5711 3.8982 -1.5398 35 1 2.0541 2.9530 -2.0949 36 1 -0.1387 5.0440 -0.3857 37 1 -1.0414 6.9578 0.8719 38 1 0.2484 7.9310 2.7297 39 1 2.4426 6.9908 3.3311 40 1 2.5043 -1.8553 2.0871 41 1 0.8034 -1.9749 1.5335 42 1 3.0981 -3.8806 1.0998 43 1 1.3482 -4.2239 1.1951 44 1 2.8205 -6.8727 0.7579 45 1 0.6326 -2.0825 -1.2847 46 1 2.2392 -1.9684 -2.0664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033491753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:17 Heat of formation + Delta-G solvation = -11.065465 kcal Electronic energy + Delta-G solvation = -27942.538391 eV Core-core repulsion = 23940.715001 eV Total energy + Delta-G solvation = -4001.823390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -49.89449 -41.52608 -40.20093 -39.11388 -37.32369 -36.29799 -34.07196 -31.76966 -31.37237 -31.10537 -29.35227 -27.82692 -26.73882 -25.31834 -24.89103 -23.36524 -22.11131 -21.89308 -21.28252 -19.91203 -19.03643 -18.95800 -18.31970 -17.60354 -17.07958 -16.76568 -16.71724 -16.58627 -16.25038 -15.91389 -15.56569 -15.15899 -15.07484 -14.58767 -14.29516 -14.16947 -14.08205 -13.92546 -13.76315 -13.64236 -13.45042 -13.07388 -13.00152 -12.93771 -12.75448 -12.39494 -12.30131 -12.15640 -12.11572 -12.04313 -11.83288 -11.75442 -11.53130 -11.47614 -10.88832 -10.75000 -9.83783 -9.68911 -9.49965 -8.94382 -7.87818 -5.25067 0.16390 0.27888 1.41575 1.44969 1.47657 1.56079 1.85488 2.48618 2.55185 2.94638 3.29300 3.30858 3.36779 3.57572 3.63729 3.71576 3.79427 3.89973 3.92793 4.03996 4.11965 4.15005 4.17746 4.32090 4.40644 4.46584 4.53497 4.60911 4.66181 4.73098 4.78946 4.90116 4.92262 4.96825 5.02251 5.07710 5.12817 5.15319 5.28006 5.40306 5.45800 5.51456 5.52907 5.58333 5.68905 5.98757 6.14857 6.39435 7.05417 7.11251 7.71538 8.35636 9.22522 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030437 B = 0.002174 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.726026 B =12874.167929 C =13086.834835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.594 5.594 3 C 0.532 3.468 4 O -0.593 6.593 5 C -0.170 4.170 6 H 0.159 0.841 7 C -0.112 4.112 8 C -0.103 4.103 9 H 0.090 0.910 10 C -0.096 4.096 11 C -0.090 4.090 12 C -0.120 4.120 13 C -0.093 4.093 14 C -0.160 4.160 15 C 0.067 3.933 16 F -0.160 7.160 17 C 0.137 3.863 18 H 0.073 0.927 19 C -0.135 4.135 20 C 0.189 3.811 21 N -0.625 5.625 22 C -0.244 4.244 23 H 0.084 0.916 24 C -0.067 4.067 25 N -0.952 5.952 26 Si 0.982 3.018 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.265 1.265 30 C 0.135 3.865 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.143 0.857 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.008 0.992 43 H 0.019 0.981 44 H 0.248 0.752 45 H 0.047 0.953 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 29.760 1.406 32.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.324 5.324 3 C 0.322 3.678 4 O -0.474 6.474 5 C -0.191 4.191 6 H 0.176 0.824 7 C -0.148 4.148 8 C -0.122 4.122 9 H 0.108 0.892 10 C -0.097 4.097 11 C -0.108 4.108 12 C -0.137 4.137 13 C -0.111 4.111 14 C -0.179 4.179 15 C 0.048 3.952 16 F -0.139 7.139 17 C 0.032 3.968 18 H 0.091 0.909 19 C -0.174 4.174 20 C 0.064 3.936 21 N -0.352 5.352 22 C -0.373 4.373 23 H 0.102 0.898 24 C -0.260 4.260 25 N -0.600 5.600 26 Si 0.810 3.190 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.190 1.190 30 C 0.009 3.991 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.170 0.830 35 H 0.115 0.885 36 H 0.180 0.820 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.026 0.974 43 H 0.037 0.963 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.789 29.508 1.429 31.808 hybrid contribution 1.382 -1.689 0.011 2.183 sum -10.407 27.819 1.441 29.737 Atomic orbital electron populations 1.22138 0.76770 1.04672 1.03684 1.47739 1.08632 1.04180 1.71887 1.20378 0.86999 0.85610 0.74774 1.90681 1.16419 1.87907 1.52428 1.22407 1.02207 0.87255 1.07210 0.82356 1.23306 1.03312 0.98764 0.89465 1.20792 0.98123 0.91675 1.01568 0.89178 1.19228 0.96726 0.97407 0.96346 1.21305 0.93105 0.96132 1.00228 1.21642 1.01340 0.95689 0.95066 1.21441 0.92592 0.99890 0.97139 1.21403 0.98795 0.96237 1.01479 1.18069 0.82230 0.96847 0.98098 1.91461 1.43755 1.86598 1.92054 1.21937 0.96243 0.82655 0.96005 0.90873 1.23050 1.02370 0.95065 0.96897 1.20857 0.97828 0.91651 0.83262 1.44676 1.83212 1.04606 1.02730 1.19460 1.40793 0.86957 0.90093 0.89794 1.25717 1.02149 1.00644 0.97470 1.70180 1.55866 1.23658 1.10336 0.85022 0.77699 0.78364 0.77893 1.21546 1.21844 1.19000 1.21836 0.98166 0.84088 0.95008 0.90678 0.90780 0.87700 0.83045 0.88545 0.82020 0.81837 0.82143 0.83940 0.91432 0.89224 0.97402 0.96323 0.94277 0.93524 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.31 8.87 127.77 1.13 2.45 16 2 N -0.59 -17.45 2.91 -814.82 -2.37 -19.82 16 3 C 0.53 16.44 7.46 87.66 0.65 17.09 16 4 O -0.59 -24.54 15.64 -3.02 -0.05 -24.59 16 5 C -0.17 -3.39 4.92 -11.54 -0.06 -3.45 16 6 H 0.16 2.11 6.44 -2.39 -0.02 2.09 16 7 C -0.11 -1.68 9.57 30.61 0.29 -1.38 16 8 C -0.10 -2.22 5.31 -11.53 -0.06 -2.28 16 9 H 0.09 2.66 7.39 -2.38 -0.02 2.64 16 10 C -0.10 -1.73 5.62 -19.82 -0.11 -1.85 16 11 C -0.09 -0.92 9.30 22.26 0.21 -0.71 16 12 C -0.12 -0.87 10.04 22.27 0.22 -0.65 16 13 C -0.09 -0.84 10.04 22.26 0.22 -0.61 16 14 C -0.16 -2.40 10.03 22.31 0.22 -2.17 16 15 C 0.07 1.42 7.25 22.37 0.16 1.58 16 16 F -0.16 -4.46 16.61 44.97 0.75 -3.72 16 17 C 0.14 5.27 3.45 46.39 0.16 5.43 16 18 H 0.07 3.31 7.02 -2.39 -0.02 3.30 16 19 C -0.13 -5.25 6.51 31.78 0.21 -5.04 16 20 C 0.19 9.70 5.37 86.73 0.47 10.17 16 21 N -0.63 -33.14 3.39 -691.96 -2.35 -35.49 16 22 C -0.24 -14.00 10.28 84.03 0.86 -13.13 16 23 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 24 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 25 N -0.95 -58.40 10.31 21.65 0.22 -58.17 16 26 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 28 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 30 C 0.14 5.70 6.79 86.86 0.59 6.29 16 31 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 32 H 0.07 1.52 6.41 -2.39 -0.02 1.51 16 33 H 0.10 1.25 5.99 -2.39 -0.01 1.23 16 34 H 0.15 0.96 6.18 -2.39 -0.01 0.95 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.16 0.66 6.02 -2.91 -0.02 0.65 16 37 H 0.16 0.13 8.06 -2.91 -0.02 0.11 16 38 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 39 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.09 2.98 6.40 -2.39 -0.02 2.96 16 42 H 0.01 0.45 7.38 -2.38 -0.02 0.43 16 43 H 0.02 1.04 7.51 -2.39 -0.02 1.02 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 45 H 0.05 1.77 7.00 -2.39 -0.02 1.76 16 46 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -80.57 372.60 4.87 -75.69 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.00 Total: 9.28 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.64 Total: 8.31 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -4.50 Total: -113.48 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.75 Total: -3.72 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -80.57 4.87 -75.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033491753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.628 kcal (2) G-P(sol) polarization free energy of solvation -80.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds