Wall clock time and date at job start Tue Mar 31 2020 16:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47064 * 2 1 4 4 C 1.34776 * 119.99824 * 85.02490 * 3 2 1 5 5 O 1.21286 * 119.99933 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.00281 * 0.02562 * 4 3 2 7 7 H 1.08995 * 112.87964 * 308.33701 * 6 4 3 8 8 C 1.52250 * 113.58845 * 177.16029 * 6 4 3 9 9 C 1.50564 * 87.23605 * 245.40933 * 8 6 4 10 10 C 1.38831 * 147.26851 * 179.97438 * 9 8 6 11 11 C 1.38029 * 120.12420 * 180.02562 * 10 9 8 12 12 C 1.38459 * 119.95296 * 359.97438 * 11 10 9 13 13 F 1.35105 * 120.03168 * 180.02562 * 12 11 10 14 14 C 1.38284 * 119.93308 * 0.02562 * 12 11 10 15 15 C 1.37740 * 92.76343 * 0.02562 * 9 8 6 16 16 C 1.46501 * 120.00064 * 265.02475 * 3 2 1 17 17 H 1.08994 * 110.88243 * 181.80063 * 16 3 2 18 18 C 1.55153 * 111.00122 * 57.91940 * 16 3 2 19 19 C 1.54325 * 102.94226 * 277.42499 * 18 16 3 20 20 N 1.47022 * 107.27092 * 337.80884 * 19 18 16 21 21 C 1.36934 * 125.64426 * 178.97465 * 20 19 18 22 22 H 1.08008 * 119.99350 * 179.97438 * 21 20 19 23 23 C 1.38806 * 120.00692 * 359.97438 * 21 20 19 24 24 N 1.31615 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00585 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46987 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47146 * 120.00025 * 25 23 21 28 28 H 1.48501 * 109.47315 * 240.00469 * 25 23 21 29 29 C 1.47525 * 108.71749 * 358.94121 * 20 19 18 30 30 H 1.09002 * 109.46712 * 294.68931 * 1 2 3 31 31 H 1.08997 * 109.47479 * 54.68867 * 1 2 3 32 32 H 1.08994 * 109.47305 * 174.69568 * 1 2 3 33 33 H 1.09001 * 109.46954 * 240.00166 * 2 1 3 34 34 H 1.08997 * 109.47399 * 120.00519 * 2 1 3 35 35 H 1.09004 * 113.58462 * 130.82626 * 8 6 4 36 36 H 1.09001 * 113.59244 * 0.02562 * 8 6 4 37 37 H 1.07996 * 119.93705 * 0.02733 * 10 9 8 38 38 H 1.07999 * 120.01923 * 180.02562 * 11 10 9 39 39 H 1.07992 * 119.97006 * 180.26777 * 14 12 11 40 40 H 1.08997 * 110.72666 * 35.79221 * 18 16 3 41 41 H 1.09000 * 110.71808 * 159.06271 * 18 16 3 42 42 H 1.09004 * 109.88293 * 97.22558 * 19 18 16 43 43 H 1.09005 * 109.88397 * 218.23575 * 19 18 16 44 44 H 0.97007 * 120.00447 * 179.97438 * 24 23 21 45 45 H 1.08994 * 110.37540 * 265.31017 * 29 20 19 46 46 H 1.09003 * 110.40991 * 142.94698 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1475 2.0503 1.1628 5 8 2.5522 3.1936 1.1629 6 6 1.7902 1.3774 2.4631 7 1 0.7955 0.9318 2.4504 8 6 2.0557 2.2406 3.6889 9 6 3.0997 1.2302 4.0840 10 6 4.0660 0.8485 5.0049 11 6 4.7868 -0.3126 4.8116 12 6 4.5457 -1.0986 3.6975 13 9 5.2500 -2.2357 3.5069 14 6 3.5833 -0.7186 2.7801 15 6 2.8599 0.4496 2.9748 16 6 2.3662 2.0352 -1.2640 17 1 2.7407 3.0438 -1.0894 18 6 1.1549 2.0517 -2.2333 19 6 1.2083 0.6501 -2.8771 20 7 2.5862 0.1571 -2.7360 21 6 3.0454 -1.0608 -3.1611 22 1 4.0804 -1.3302 -3.0104 23 6 2.1809 -1.9492 -3.7857 24 7 0.9197 -1.6207 -3.9698 25 14 2.8075 -3.6104 -4.3662 26 1 4.2517 -3.7351 -4.0433 27 1 2.0527 -4.6909 -3.6821 28 1 2.6164 -3.7261 -5.8344 29 6 3.3925 1.1921 -2.0613 30 1 -0.3633 0.4293 0.9338 31 1 -0.3634 0.5940 -0.8386 32 1 -0.3633 -1.0232 -0.0950 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.2130 2.2895 4.3786 36 1 2.4658 3.2220 3.4508 37 1 4.2539 1.4611 5.8742 38 1 5.5378 -0.6082 5.5292 39 1 3.3918 -1.3334 1.9132 40 1 0.2233 2.1887 -1.6843 41 1 1.2762 2.8280 -2.9889 42 1 0.5201 -0.0206 -2.3625 43 1 0.9419 0.7163 -3.9320 44 1 0.3156 -2.2413 -4.4066 45 1 3.9043 1.8133 -2.7962 46 1 4.1126 0.7318 -1.3848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033938118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:49 Heat of formation + Delta-G solvation = 24.948854 kcal Electronic energy + Delta-G solvation = -29828.623627 eV Core-core repulsion = 25828.361935 eV Total energy + Delta-G solvation = -4000.261692 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.95172 -41.32705 -39.39073 -37.52774 -35.14665 -34.63122 -32.38156 -30.97138 -30.32874 -29.32934 -27.84573 -26.98685 -25.34436 -24.42123 -23.02399 -22.56686 -21.19675 -20.12093 -20.05070 -18.52241 -17.70550 -17.17322 -16.96601 -16.61277 -15.96039 -15.57901 -15.27709 -15.07005 -14.72599 -14.24975 -14.20656 -13.96769 -13.71733 -13.58044 -13.18855 -12.92930 -12.60750 -12.49020 -12.09521 -11.97691 -11.93264 -11.88230 -11.81230 -11.38925 -11.20277 -11.00956 -10.93088 -10.77525 -10.77000 -10.49149 -10.22866 -10.14645 -9.93788 -9.70660 -9.59259 -9.03022 -8.71324 -8.58518 -8.24722 -6.86741 -5.79610 -3.13777 0.94708 1.03772 2.71122 3.23419 3.34801 3.42265 3.43363 3.43971 3.82380 4.09175 4.32280 4.41128 4.43352 4.70005 4.80121 5.05865 5.15857 5.33841 5.35670 5.41098 5.42627 5.46859 5.55988 5.59494 5.66752 5.76585 5.79149 5.85209 5.87747 5.93089 5.97751 6.01548 6.17857 6.20445 6.30986 6.45784 6.48197 6.51106 6.59079 6.70405 6.72045 6.78856 7.10017 7.50643 7.55263 7.76455 7.81383 8.16585 8.40423 9.13997 9.73054 10.38308 11.31103 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004396 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.668699 B = 6368.212485 C = 7894.663929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.077 3.923 3 N -0.576 5.576 4 C 0.528 3.472 5 O -0.549 6.549 6 C -0.067 4.067 7 H 0.124 0.876 8 C -0.057 4.057 9 C -0.128 4.128 10 C -0.070 4.070 11 C -0.148 4.148 12 C 0.099 3.901 13 F -0.137 7.137 14 C -0.120 4.120 15 C -0.089 4.089 16 C 0.122 3.878 17 H 0.099 0.901 18 C -0.157 4.157 19 C 0.167 3.833 20 N -0.601 5.601 21 C -0.232 4.232 22 H 0.078 0.922 23 C -0.003 4.003 24 N -0.918 5.918 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.291 1.291 29 C 0.124 3.876 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.139 0.861 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.252 0.748 45 H 0.031 0.969 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 5.098 16.588 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.046 4.046 3 N -0.306 5.306 4 C 0.315 3.685 5 O -0.428 6.428 6 C -0.087 4.087 7 H 0.142 0.858 8 C -0.094 4.094 9 C -0.128 4.128 10 C -0.088 4.088 11 C -0.166 4.166 12 C 0.080 3.920 13 F -0.115 7.115 14 C -0.138 4.138 15 C -0.090 4.090 16 C 0.018 3.982 17 H 0.117 0.883 18 C -0.196 4.196 19 C 0.043 3.957 20 N -0.329 5.329 21 C -0.360 4.360 22 H 0.096 0.904 23 C -0.200 4.200 24 N -0.565 5.565 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.218 1.218 29 C -0.003 4.003 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.623 5.430 16.433 17.318 hybrid contribution 0.380 -1.399 -0.539 1.547 sum 1.003 4.031 15.893 16.427 Atomic orbital electron populations 1.22305 0.96259 1.02691 1.01209 1.22218 0.94374 0.81889 1.06069 1.47789 1.63007 1.14458 1.05364 1.19915 0.77837 0.86009 0.84701 1.90640 1.47314 1.17949 1.86908 1.21258 0.98989 0.94478 0.94021 0.85799 1.21439 0.95894 0.98307 0.93735 1.21909 0.97318 0.98107 0.95482 1.20197 0.94277 0.95545 0.98756 1.20981 1.02221 0.95642 0.97788 1.17323 0.93814 0.84575 0.96279 1.91521 1.76933 1.47874 1.95189 1.20484 0.95972 0.97334 1.00052 1.21123 0.97127 0.93893 0.96848 1.22265 0.96611 0.96721 0.82567 0.88287 1.23299 0.97211 1.01080 0.98044 1.21388 0.86904 0.88630 0.98773 1.44631 1.05722 1.14194 1.68316 1.19085 0.94849 0.89957 1.32100 0.90418 1.24757 0.95807 0.98603 1.00819 1.69967 1.03268 1.35525 1.47769 0.86104 0.77921 0.83838 0.78266 1.20525 1.21715 1.21763 1.21927 0.93261 0.91201 0.93872 0.94210 0.91066 0.91563 0.84332 0.92091 0.88401 0.87015 0.85186 0.84372 0.84395 0.91668 0.91472 0.92112 0.94095 0.93753 0.95112 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.14 37.16 0.34 -2.18 16 2 C 0.08 1.28 4.86 -4.04 -0.02 1.26 16 3 N -0.58 -9.69 2.53 -163.67 -0.41 -10.10 16 4 C 0.53 8.52 7.17 -10.98 -0.08 8.44 16 5 O -0.55 -10.18 15.07 5.55 0.08 -10.10 16 6 C -0.07 -0.84 3.04 -93.66 -0.28 -1.13 16 7 H 0.12 1.36 6.41 -51.93 -0.33 1.03 16 8 C -0.06 -0.61 7.69 -28.62 -0.22 -0.83 16 9 C -0.13 -1.49 7.42 -104.94 -0.78 -2.27 16 10 C -0.07 -0.71 10.06 -39.44 -0.40 -1.11 16 11 C -0.15 -1.57 10.02 -39.58 -0.40 -1.97 16 12 C 0.10 1.28 7.30 -39.48 -0.29 0.99 16 13 F -0.14 -1.87 17.27 2.25 0.04 -1.83 16 14 C -0.12 -1.63 9.56 -39.37 -0.38 -2.00 16 15 C -0.09 -1.17 6.09 -104.96 -0.64 -1.81 16 16 C 0.12 2.21 3.66 -65.78 -0.24 1.97 16 17 H 0.10 1.78 7.01 -51.93 -0.36 1.42 16 18 C -0.16 -2.85 6.00 -24.90 -0.15 -3.00 16 19 C 0.17 3.72 4.16 -3.06 -0.01 3.71 16 20 N -0.60 -14.11 1.89 -169.99 -0.32 -14.43 16 21 C -0.23 -6.03 9.86 -15.06 -0.15 -6.18 16 22 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 23 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 24 N -0.92 -25.08 10.31 55.49 0.57 -24.51 16 25 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 29 C 0.12 2.52 6.51 -2.47 -0.02 2.50 16 30 H 0.04 0.50 6.61 -51.93 -0.34 0.16 16 31 H 0.07 1.17 4.69 -51.93 -0.24 0.93 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.14 2.88 4.37 -51.93 -0.23 2.65 16 34 H 0.06 0.92 4.65 -51.93 -0.24 0.68 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 1.33 7.02 -51.93 -0.36 0.96 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.14 1.90 6.97 -52.49 -0.37 1.54 16 40 H 0.06 1.11 6.70 -51.93 -0.35 0.76 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.42 4.50 -51.93 -0.23 1.18 16 43 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 44 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 355.37 15.07 5.36 5.36 Total: -1.00 -29.14 355.37 -9.47 -38.61 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.96 Total: 4.58 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.80 Total: -3.78 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.16 Total: -49.04 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.14 -9.47 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033938118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.562 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds