Wall clock time and date at job start Tue Mar 31 2020 16:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47064 * 2 1 4 4 C 1.34776 * 119.99824 * 85.02490 * 3 2 1 5 5 O 1.21286 * 119.99933 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.00281 * 0.02562 * 4 3 2 7 7 H 1.08995 * 112.87964 * 308.33701 * 6 4 3 8 8 C 1.52250 * 113.58845 * 177.16029 * 6 4 3 9 9 C 1.50564 * 87.23605 * 245.40933 * 8 6 4 10 10 C 1.38831 * 147.26851 * 179.97438 * 9 8 6 11 11 C 1.38029 * 120.12420 * 180.02562 * 10 9 8 12 12 C 1.38459 * 119.95296 * 359.97438 * 11 10 9 13 13 F 1.35105 * 120.03168 * 180.02562 * 12 11 10 14 14 C 1.38284 * 119.93308 * 0.02562 * 12 11 10 15 15 C 1.37740 * 92.76343 * 0.02562 * 9 8 6 16 16 C 1.46501 * 120.00064 * 265.02475 * 3 2 1 17 17 H 1.08994 * 110.88243 * 181.80063 * 16 3 2 18 18 C 1.55153 * 111.00122 * 57.91940 * 16 3 2 19 19 C 1.54325 * 102.94226 * 277.42499 * 18 16 3 20 20 N 1.47022 * 107.27092 * 337.80884 * 19 18 16 21 21 C 1.36934 * 125.64426 * 178.97465 * 20 19 18 22 22 H 1.08008 * 119.99350 * 179.97438 * 21 20 19 23 23 C 1.38806 * 120.00692 * 359.97438 * 21 20 19 24 24 N 1.31615 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00585 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46987 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47146 * 120.00025 * 25 23 21 28 28 H 1.48501 * 109.47315 * 240.00469 * 25 23 21 29 29 C 1.47525 * 108.71749 * 358.94121 * 20 19 18 30 30 H 1.09002 * 109.46712 * 294.68931 * 1 2 3 31 31 H 1.08997 * 109.47479 * 54.68867 * 1 2 3 32 32 H 1.08994 * 109.47305 * 174.69568 * 1 2 3 33 33 H 1.09001 * 109.46954 * 240.00166 * 2 1 3 34 34 H 1.08997 * 109.47399 * 120.00519 * 2 1 3 35 35 H 1.09004 * 113.58462 * 130.82626 * 8 6 4 36 36 H 1.09001 * 113.59244 * 0.02562 * 8 6 4 37 37 H 1.07996 * 119.93705 * 0.02733 * 10 9 8 38 38 H 1.07999 * 120.01923 * 180.02562 * 11 10 9 39 39 H 1.07992 * 119.97006 * 180.26777 * 14 12 11 40 40 H 1.08997 * 110.72666 * 35.79221 * 18 16 3 41 41 H 1.09000 * 110.71808 * 159.06271 * 18 16 3 42 42 H 1.09004 * 109.88293 * 97.22558 * 19 18 16 43 43 H 1.09005 * 109.88397 * 218.23575 * 19 18 16 44 44 H 0.97007 * 120.00447 * 179.97438 * 24 23 21 45 45 H 1.08994 * 110.37540 * 265.31017 * 29 20 19 46 46 H 1.09003 * 110.40991 * 142.94698 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1475 2.0503 1.1628 5 8 2.5522 3.1936 1.1629 6 6 1.7902 1.3774 2.4631 7 1 0.7955 0.9318 2.4504 8 6 2.0557 2.2406 3.6889 9 6 3.0997 1.2302 4.0840 10 6 4.0660 0.8485 5.0049 11 6 4.7868 -0.3126 4.8116 12 6 4.5457 -1.0986 3.6975 13 9 5.2500 -2.2357 3.5069 14 6 3.5833 -0.7186 2.7801 15 6 2.8599 0.4496 2.9748 16 6 2.3662 2.0352 -1.2640 17 1 2.7407 3.0438 -1.0894 18 6 1.1549 2.0517 -2.2333 19 6 1.2083 0.6501 -2.8771 20 7 2.5862 0.1571 -2.7360 21 6 3.0454 -1.0608 -3.1611 22 1 4.0804 -1.3302 -3.0104 23 6 2.1809 -1.9492 -3.7857 24 7 0.9197 -1.6207 -3.9698 25 14 2.8075 -3.6104 -4.3662 26 1 4.2517 -3.7351 -4.0433 27 1 2.0527 -4.6909 -3.6821 28 1 2.6164 -3.7261 -5.8344 29 6 3.3925 1.1921 -2.0613 30 1 -0.3633 0.4293 0.9338 31 1 -0.3634 0.5940 -0.8386 32 1 -0.3633 -1.0232 -0.0950 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.2130 2.2895 4.3786 36 1 2.4658 3.2220 3.4508 37 1 4.2539 1.4611 5.8742 38 1 5.5378 -0.6082 5.5292 39 1 3.3918 -1.3334 1.9132 40 1 0.2233 2.1887 -1.6843 41 1 1.2762 2.8280 -2.9889 42 1 0.5201 -0.0206 -2.3625 43 1 0.9419 0.7163 -3.9320 44 1 0.3156 -2.2413 -4.4066 45 1 3.9043 1.8133 -2.7962 46 1 4.1126 0.7318 -1.3848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033938118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:48 Heat of formation + Delta-G solvation = 11.533766 kcal Electronic energy + Delta-G solvation = -29829.205349 eV Core-core repulsion = 25828.361935 eV Total energy + Delta-G solvation = -4000.843413 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.95568 -42.37556 -40.68944 -38.97723 -36.19416 -36.08703 -34.18629 -31.94765 -31.73067 -31.06173 -29.05826 -28.32204 -26.67147 -25.99578 -24.23993 -23.64811 -22.33559 -21.92751 -21.23289 -19.81423 -18.92460 -18.81249 -18.24675 -17.61583 -17.24202 -16.68856 -16.62392 -16.31586 -16.18215 -15.73080 -15.61070 -15.19238 -15.05941 -14.60377 -14.34498 -14.27039 -13.89410 -13.77888 -13.69913 -13.51640 -13.34724 -12.94814 -12.87664 -12.83878 -12.72595 -12.54150 -12.29498 -12.20400 -12.08514 -11.99218 -11.80844 -11.76008 -11.57679 -11.49571 -10.88856 -10.68255 -9.98399 -9.69428 -9.51114 -8.78421 -7.82867 -5.17221 0.04195 0.13264 1.45876 1.47647 1.48617 1.56438 1.97668 2.49326 2.50304 2.86166 3.21991 3.36544 3.40123 3.51131 3.55435 3.67597 3.89777 3.91517 4.02749 4.13542 4.20798 4.30904 4.32142 4.47548 4.48869 4.61170 4.63802 4.66513 4.73680 4.82502 4.85633 4.91286 4.96893 4.97549 5.03950 5.06643 5.09009 5.17203 5.28645 5.40780 5.49387 5.57651 5.67818 5.71298 5.83996 5.85625 6.21989 6.48742 7.10350 7.13338 7.77354 8.41947 9.26230 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004396 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.668699 B = 6368.212485 C = 7894.663929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.085 3.915 3 N -0.579 5.579 4 C 0.528 3.472 5 O -0.573 6.573 6 C -0.067 4.067 7 H 0.144 0.856 8 C -0.045 4.045 9 C -0.126 4.126 10 C -0.064 4.064 11 C -0.139 4.139 12 C 0.078 3.922 13 F -0.148 7.148 14 C -0.138 4.138 15 C -0.112 4.112 16 C 0.133 3.867 17 H 0.107 0.893 18 C -0.142 4.142 19 C 0.178 3.822 20 N -0.613 5.613 21 C -0.239 4.239 22 H 0.074 0.926 23 C -0.049 4.049 24 N -0.939 5.939 25 Si 0.965 3.035 26 H -0.273 1.273 27 H -0.290 1.290 28 H -0.295 1.295 29 C 0.124 3.876 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.002 0.998 44 H 0.247 0.753 45 H 0.035 0.965 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 6.100 19.341 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.038 4.038 3 N -0.309 5.309 4 C 0.317 3.683 5 O -0.454 6.454 6 C -0.087 4.087 7 H 0.161 0.839 8 C -0.082 4.082 9 C -0.127 4.127 10 C -0.082 4.082 11 C -0.157 4.157 12 C 0.059 3.941 13 F -0.126 7.126 14 C -0.157 4.157 15 C -0.113 4.113 16 C 0.028 3.972 17 H 0.124 0.876 18 C -0.181 4.181 19 C 0.054 3.946 20 N -0.340 5.340 21 C -0.368 4.368 22 H 0.092 0.908 23 C -0.243 4.243 24 N -0.588 5.588 25 Si 0.795 3.205 26 H -0.198 1.198 27 H -0.217 1.217 28 H -0.223 1.223 29 C -0.002 4.002 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.121 0.879 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.140 0.860 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.632 6.442 19.204 20.265 hybrid contribution 0.459 -1.694 -1.362 2.222 sum 1.090 4.748 17.842 18.495 Atomic orbital electron populations 1.22214 0.94881 1.02433 1.02196 1.22011 0.95409 0.81614 1.04721 1.47812 1.63260 1.14451 1.05383 1.20484 0.76815 0.85703 0.85333 1.90626 1.48291 1.19107 1.87344 1.21354 0.99822 0.94876 0.92651 0.83892 1.21458 0.96689 0.96986 0.93049 1.22184 0.97557 0.97795 0.95127 1.20596 0.92944 0.95309 0.99312 1.21329 1.02269 0.95088 0.97057 1.17597 0.94214 0.84938 0.97378 1.91488 1.77198 1.48579 1.95377 1.20494 0.97102 0.97943 1.00165 1.21214 0.97849 0.94171 0.98039 1.22081 0.95598 0.96505 0.83029 0.87561 1.23163 0.98099 0.98627 0.98210 1.21155 0.86129 0.90779 0.96519 1.44749 1.06664 1.14173 1.68366 1.19296 0.94741 0.91158 1.31567 0.90821 1.25381 0.96082 1.01359 1.01488 1.70137 1.03984 1.36132 1.48517 0.85210 0.77662 0.80442 0.77194 1.19827 1.21740 1.22264 1.21996 0.93552 0.90765 0.93885 0.91084 0.92516 0.92025 0.88365 0.90711 0.84886 0.87942 0.81653 0.81681 0.85989 0.90049 0.90208 0.93417 0.97997 0.94359 0.94734 0.94597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 9.14 71.98 0.66 -4.03 16 2 C 0.09 2.84 4.86 86.38 0.42 3.26 16 3 N -0.58 -19.06 2.53 -790.12 -2.00 -21.06 16 4 C 0.53 16.19 7.17 87.66 0.63 16.82 16 5 O -0.57 -20.34 15.07 -3.05 -0.05 -20.39 16 6 C -0.07 -1.53 3.04 -12.76 -0.04 -1.56 16 7 H 0.14 2.68 6.41 -2.39 -0.02 2.66 16 8 C -0.05 -0.81 7.69 29.37 0.23 -0.59 16 9 C -0.13 -2.56 7.42 -20.07 -0.15 -2.71 16 10 C -0.06 -1.06 10.06 22.36 0.22 -0.84 16 11 C -0.14 -2.58 10.02 22.27 0.22 -2.36 16 12 C 0.08 1.94 7.30 22.33 0.16 2.10 16 13 F -0.15 -4.04 17.27 44.97 0.78 -3.26 16 14 C -0.14 -3.73 9.56 22.41 0.21 -3.51 16 15 C -0.11 -2.76 6.09 -20.08 -0.12 -2.88 16 16 C 0.13 4.72 3.66 46.38 0.17 4.89 16 17 H 0.11 3.70 7.01 -2.39 -0.02 3.68 16 18 C -0.14 -5.08 6.00 31.78 0.19 -4.89 16 19 C 0.18 8.17 4.16 86.73 0.36 8.53 16 20 N -0.61 -29.55 1.89 -691.71 -1.31 -30.86 16 21 C -0.24 -12.76 9.86 84.03 0.83 -11.93 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 23 C -0.05 -2.64 5.49 84.86 0.47 -2.18 16 24 N -0.94 -52.87 10.31 21.65 0.22 -52.65 16 25 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 28 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 29 C 0.12 5.10 6.51 86.84 0.56 5.66 16 30 H 0.07 1.62 6.61 -2.39 -0.02 1.60 16 31 H 0.06 1.83 4.69 -2.39 -0.01 1.82 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.10 4.20 4.37 -2.39 -0.01 4.19 16 34 H 0.07 2.27 4.65 -2.39 -0.01 2.26 16 35 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 2.12 7.02 -2.39 -0.02 2.11 16 37 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 39 H 0.12 3.53 6.97 -2.91 -0.02 3.51 16 40 H 0.08 2.66 6.70 -2.39 -0.02 2.65 16 41 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.05 2.30 4.50 -2.38 -0.01 2.29 16 43 H 0.00 0.09 7.50 -2.38 -0.02 0.08 16 44 H 0.25 13.64 8.31 -92.70 -0.77 12.87 16 45 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -64.73 355.37 5.73 -59.00 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.02 Total: 18.90 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.03 Total: 3.78 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.08 Total: -104.57 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -64.73 5.73 -59.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033938118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.535 kcal (2) G-P(sol) polarization free energy of solvation -64.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds