Wall clock time and date at job start Tue Mar 31 2020 16:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99952 * 2 1 4 4 O 1.21277 * 119.99950 * 173.95466 * 3 2 1 5 5 C 1.50700 * 120.00144 * 353.95053 * 3 2 1 6 6 C 1.50702 * 112.84981 * 293.09868 * 5 3 2 7 7 C 1.38261 * 119.98680 * 305.90941 * 6 5 3 8 8 C 1.38224 * 120.05240 * 179.97438 * 7 6 5 9 9 C 1.38215 * 120.02611 * 0.02562 * 8 7 6 10 10 C 1.38442 * 119.97349 * 359.97438 * 9 8 7 11 11 F 1.35106 * 120.02601 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98619 * 125.63190 * 6 5 3 13 13 C 1.53775 * 113.61587 * 161.90016 * 5 3 2 14 14 C 1.54055 * 86.98415 * 270.83915 * 13 5 3 15 15 C 1.53776 * 87.07763 * 334.56758 * 14 13 5 16 16 C 1.46497 * 119.99885 * 180.02562 * 2 1 3 17 17 C 1.53498 * 114.20865 * 59.99983 * 16 2 1 18 18 N 1.47068 * 87.98416 * 220.34506 * 17 16 2 19 19 C 1.36940 * 136.05436 * 207.09116 * 18 17 16 20 20 H 1.08002 * 120.00170 * 7.01474 * 19 18 17 21 21 C 1.38807 * 119.99532 * 187.02261 * 19 18 17 22 22 N 1.31622 * 119.99892 * 194.42645 * 21 19 18 23 23 Si 1.86799 * 120.00617 * 14.42765 * 21 19 18 24 24 H 1.48501 * 109.47074 * 270.00451 * 23 21 19 25 25 H 1.48501 * 109.46695 * 29.99819 * 23 21 19 26 26 H 1.48500 * 109.47391 * 149.99803 * 23 21 19 27 27 C 1.47064 * 87.88412 * 27.34081 * 18 17 16 28 28 H 1.09003 * 109.47156 * 275.28565 * 1 2 3 29 29 H 1.08997 * 109.47610 * 35.28902 * 1 2 3 30 30 H 1.09003 * 109.47192 * 155.29181 * 1 2 3 31 31 H 1.08005 * 119.97477 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.98976 * 179.97438 * 8 7 6 33 33 H 1.08000 * 120.01401 * 180.02562 * 9 8 7 34 34 H 1.08006 * 120.01459 * 0.02562 * 12 6 5 35 35 H 1.09000 * 113.61383 * 25.42918 * 13 5 3 36 36 H 1.09000 * 113.61733 * 156.33709 * 13 5 3 37 37 H 1.09001 * 113.62059 * 220.01883 * 14 13 5 38 38 H 1.09004 * 113.68901 * 89.12992 * 14 13 5 39 39 H 1.08996 * 113.61564 * 270.88085 * 15 14 13 40 40 H 1.09007 * 113.68752 * 139.98819 * 15 14 13 41 41 H 1.09007 * 113.28191 * 193.06598 * 16 2 1 42 42 H 1.09005 * 113.46510 * 105.56434 * 17 16 2 43 43 H 1.09000 * 113.52090 * 335.13393 * 17 16 2 44 44 H 0.97009 * 119.99966 * 354.93764 * 22 21 19 45 45 H 1.08994 * 113.46448 * 87.44180 * 27 18 17 46 46 H 1.09003 * 113.46594 * 217.87764 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3466 1.1702 0.1106 5 6 1.3917 2.4687 -0.1375 6 6 0.7476 2.6336 -1.4900 7 6 1.5089 2.5107 -2.6375 8 6 0.9194 2.6611 -3.8787 9 6 -0.4319 2.9353 -3.9739 10 6 -1.1952 3.0586 -2.8255 11 9 -2.5164 3.3261 -2.9174 12 6 -0.6046 2.9020 -1.5828 13 6 2.2029 3.6953 0.3121 14 6 1.6314 3.4547 1.7223 15 6 0.4425 2.7611 1.0365 16 6 2.1974 -1.2687 -0.0006 17 6 1.9059 -2.1633 -1.2134 18 7 1.9118 -3.3155 -0.2995 19 6 2.1801 -4.6544 -0.4026 20 1 2.5788 -5.0560 -1.3225 21 6 1.9393 -5.4954 0.6751 22 7 2.4492 -6.7087 0.6898 23 14 0.8915 -4.9054 2.1046 24 1 1.7600 -4.2595 3.1214 25 1 -0.1090 -3.9242 1.6130 26 1 0.1906 -6.0632 2.7156 27 6 1.4968 -2.3981 0.7724 28 1 -0.3633 0.0947 1.0233 29 1 -0.3634 0.8388 -0.5936 30 1 -0.3634 -0.9336 -0.4296 31 1 2.5649 2.2961 -2.5642 32 1 1.5151 2.5653 -4.7744 33 1 -0.8924 3.0524 -4.9438 34 1 -1.2000 2.9939 -0.6863 35 1 3.2816 3.5532 0.2466 36 1 1.8696 4.6291 -0.1406 37 1 1.3595 4.3714 2.2456 38 1 2.2366 2.7832 2.3315 39 1 -0.3712 3.4400 0.7815 40 1 0.0998 1.8653 1.5546 41 1 3.2576 -1.1543 0.2259 42 1 2.7159 -2.1834 -1.9426 43 1 0.9336 -1.9754 -1.6688 44 1 2.9312 -7.0417 -0.0834 45 1 0.4164 -2.2716 0.8413 46 1 1.9582 -2.6184 1.7351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043502559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:51 Heat of formation + Delta-G solvation = 44.875143 kcal Electronic energy + Delta-G solvation = -29481.196869 eV Core-core repulsion = 25481.799246 eV Total energy + Delta-G solvation = -3999.397623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.15169 -41.48324 -39.32405 -38.39221 -37.04035 -34.75922 -32.31252 -31.64667 -30.87311 -28.26867 -27.14599 -26.28480 -25.97256 -25.33912 -23.34439 -22.88198 -22.09609 -20.94621 -19.27771 -18.67535 -18.08254 -17.49561 -16.82817 -16.51825 -16.42549 -16.09973 -15.86916 -15.69311 -15.23075 -14.79224 -14.73469 -14.26124 -13.70815 -13.67157 -13.55282 -13.31992 -13.02960 -12.82704 -12.63999 -12.26569 -12.16262 -12.05902 -12.01743 -11.96076 -11.70497 -11.58950 -11.25286 -11.12206 -10.75230 -10.65355 -10.54691 -10.25092 -9.84466 -9.67318 -9.27391 -9.19388 -8.91444 -8.76361 -8.34967 -7.23845 -6.35339 -3.27947 0.82495 0.87892 2.55306 2.97804 3.24619 3.38217 3.43485 3.58764 3.90149 4.10784 4.26146 4.30603 4.37686 4.52574 4.55591 4.63844 4.72650 4.81215 4.87269 5.02507 5.05586 5.11438 5.19598 5.34492 5.37783 5.40157 5.50392 5.51156 5.61414 5.67871 5.72721 5.77776 5.79713 5.81978 5.85836 5.86826 5.99940 6.12270 6.12521 6.17493 6.25129 6.33184 6.43786 6.56817 6.92853 7.03640 7.49863 8.19654 8.20093 8.92788 9.45256 10.29836 11.15051 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.003616 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.354240 B = 7740.858439 C = 8359.554080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.592 5.592 3 C 0.543 3.457 4 O -0.534 6.534 5 C -0.070 4.070 6 C -0.031 4.031 7 C -0.117 4.117 8 C -0.084 4.084 9 C -0.156 4.156 10 C 0.100 3.900 11 F -0.140 7.140 12 C -0.153 4.153 13 C -0.110 4.110 14 C -0.140 4.140 15 C -0.135 4.135 16 C 0.100 3.900 17 C 0.109 3.891 18 N -0.616 5.616 19 C -0.306 4.306 20 H 0.084 0.916 21 C -0.021 4.021 22 N -0.930 5.930 23 Si 1.062 2.938 24 H -0.292 1.292 25 H -0.282 1.282 26 H -0.294 1.294 27 C 0.094 3.906 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.262 0.738 45 H 0.050 0.950 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.342 25.763 -4.350 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.323 5.323 3 C 0.330 3.670 4 O -0.410 6.410 5 C -0.073 4.073 6 C -0.032 4.032 7 C -0.135 4.135 8 C -0.102 4.102 9 C -0.175 4.175 10 C 0.081 3.919 11 F -0.118 7.118 12 C -0.171 4.171 13 C -0.148 4.148 14 C -0.177 4.177 15 C -0.172 4.172 16 C -0.004 4.004 17 C -0.019 4.019 18 N -0.344 5.344 19 C -0.432 4.432 20 H 0.102 0.898 21 C -0.221 4.221 22 N -0.571 5.571 23 Si 0.893 3.107 24 H -0.220 1.220 25 H -0.209 1.209 26 H -0.222 1.222 27 C -0.033 4.033 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.143 0.857 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.265 25.020 -2.834 26.207 hybrid contribution 0.018 0.269 -1.751 1.771 sum -7.247 25.289 -4.584 26.704 Atomic orbital electron populations 1.22096 0.79853 1.03943 1.01847 1.47776 1.06898 1.05734 1.71914 1.19638 0.87254 0.84048 0.76070 1.90685 1.13930 1.86846 1.49568 1.20964 0.98518 0.95230 0.92590 1.19159 0.92404 0.97820 0.93768 1.21152 1.00823 0.99862 0.91694 1.21020 0.93859 0.97284 0.98005 1.21183 0.94789 1.03661 0.97828 1.17626 0.77939 1.01930 0.94408 1.91510 1.31860 1.91374 1.97097 1.21059 0.95154 1.04086 0.96836 1.22903 1.01088 0.95140 0.95632 1.22875 0.97196 1.01106 0.96547 1.23237 0.97057 1.01830 0.95053 1.23611 0.97819 0.79634 0.99292 1.22768 0.98625 0.86708 0.93801 1.45885 1.79623 1.03759 1.05159 1.20115 1.40539 0.79622 1.02887 0.89847 1.25774 1.00664 0.94754 1.00878 1.70899 1.37274 1.18040 1.30909 0.83790 0.76705 0.74616 0.75546 1.22009 1.20858 1.22158 1.23116 0.97603 0.88052 0.94504 0.92271 0.90805 0.90181 0.85145 0.84779 0.84740 0.84105 0.89407 0.89287 0.90750 0.89666 0.88607 0.90021 0.85651 0.93304 0.94536 0.92744 0.93249 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 7.87 59.85 0.47 1.26 16 2 N -0.59 -8.75 3.11 -173.56 -0.54 -9.29 16 3 C 0.54 7.80 5.95 -10.98 -0.07 7.73 16 4 O -0.53 -9.41 15.47 5.56 0.09 -9.33 16 5 C -0.07 -0.73 0.49 -156.00 -0.08 -0.81 16 6 C -0.03 -0.31 3.84 -104.64 -0.40 -0.71 16 7 C -0.12 -1.18 9.35 -39.58 -0.37 -1.55 16 8 C -0.08 -0.72 10.04 -39.60 -0.40 -1.12 16 9 C -0.16 -1.35 10.03 -39.51 -0.40 -1.75 16 10 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 11 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 12 C -0.15 -1.38 7.52 -39.51 -0.30 -1.67 16 13 C -0.11 -1.04 7.11 -25.78 -0.18 -1.22 16 14 C -0.14 -1.22 7.81 -25.78 -0.20 -1.42 16 15 C -0.13 -1.13 5.72 -25.92 -0.15 -1.27 16 16 C 0.10 1.84 4.60 -67.68 -0.31 1.53 16 17 C 0.11 2.17 8.23 -8.51 -0.07 2.10 16 18 N -0.62 -15.16 3.63 -184.63 -0.67 -15.83 16 19 C -0.31 -8.81 11.04 -15.06 -0.17 -8.97 16 20 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 21 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 22 N -0.93 -29.31 13.70 55.49 0.76 -28.55 16 23 Si 1.06 26.40 25.48 -169.99 -4.33 22.07 16 24 H -0.29 -7.03 6.98 56.52 0.39 -6.64 16 25 H -0.28 -6.39 5.58 56.52 0.32 -6.07 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 C 0.09 1.96 5.00 -8.38 -0.04 1.92 16 28 H 0.06 0.62 6.94 -51.93 -0.36 0.26 16 29 H 0.07 0.76 3.94 -51.93 -0.20 0.55 16 30 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 31 H 0.13 1.40 7.99 -52.48 -0.42 0.98 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.04 5.92 -52.48 -0.31 0.73 16 35 H 0.09 0.97 7.35 -51.93 -0.38 0.59 16 36 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.62 6.18 -51.93 -0.32 0.30 16 40 H 0.08 0.71 5.94 -51.93 -0.31 0.40 16 41 H 0.13 2.49 7.26 -51.93 -0.38 2.11 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.69 7.05 -51.93 -0.37 0.33 16 44 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 45 H 0.05 0.98 5.31 -51.93 -0.28 0.70 16 46 H 0.06 1.21 6.11 -51.93 -0.32 0.90 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -33.35 357.10 -8.47 -41.82 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.15 Total: 1.14 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.04 Total: -6.02 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.45 Total: -53.66 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.33 Total: 22.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.35 -8.47 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043502559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.691 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds