Wall clock time and date at job start Tue Mar 31 2020 16:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99952 * 2 1 4 4 O 1.21277 * 119.99950 * 173.95466 * 3 2 1 5 5 C 1.50700 * 120.00144 * 353.95053 * 3 2 1 6 6 C 1.50702 * 112.84981 * 293.09868 * 5 3 2 7 7 C 1.38261 * 119.98680 * 305.90941 * 6 5 3 8 8 C 1.38224 * 120.05240 * 179.97438 * 7 6 5 9 9 C 1.38215 * 120.02611 * 0.02562 * 8 7 6 10 10 C 1.38442 * 119.97349 * 359.97438 * 9 8 7 11 11 F 1.35106 * 120.02601 * 180.02562 * 10 9 8 12 12 C 1.38173 * 119.98619 * 125.63190 * 6 5 3 13 13 C 1.53775 * 113.61587 * 161.90016 * 5 3 2 14 14 C 1.54055 * 86.98415 * 270.83915 * 13 5 3 15 15 C 1.53776 * 87.07763 * 334.56758 * 14 13 5 16 16 C 1.46497 * 119.99885 * 180.02562 * 2 1 3 17 17 C 1.53498 * 114.20865 * 59.99983 * 16 2 1 18 18 N 1.47068 * 87.98416 * 220.34506 * 17 16 2 19 19 C 1.36940 * 136.05436 * 207.09116 * 18 17 16 20 20 H 1.08002 * 120.00170 * 7.01474 * 19 18 17 21 21 C 1.38807 * 119.99532 * 187.02261 * 19 18 17 22 22 N 1.31622 * 119.99892 * 194.42645 * 21 19 18 23 23 Si 1.86799 * 120.00617 * 14.42765 * 21 19 18 24 24 H 1.48501 * 109.47074 * 270.00451 * 23 21 19 25 25 H 1.48501 * 109.46695 * 29.99819 * 23 21 19 26 26 H 1.48500 * 109.47391 * 149.99803 * 23 21 19 27 27 C 1.47064 * 87.88412 * 27.34081 * 18 17 16 28 28 H 1.09003 * 109.47156 * 275.28565 * 1 2 3 29 29 H 1.08997 * 109.47610 * 35.28902 * 1 2 3 30 30 H 1.09003 * 109.47192 * 155.29181 * 1 2 3 31 31 H 1.08005 * 119.97477 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.98976 * 179.97438 * 8 7 6 33 33 H 1.08000 * 120.01401 * 180.02562 * 9 8 7 34 34 H 1.08006 * 120.01459 * 0.02562 * 12 6 5 35 35 H 1.09000 * 113.61383 * 25.42918 * 13 5 3 36 36 H 1.09000 * 113.61733 * 156.33709 * 13 5 3 37 37 H 1.09001 * 113.62059 * 220.01883 * 14 13 5 38 38 H 1.09004 * 113.68901 * 89.12992 * 14 13 5 39 39 H 1.08996 * 113.61564 * 270.88085 * 15 14 13 40 40 H 1.09007 * 113.68752 * 139.98819 * 15 14 13 41 41 H 1.09007 * 113.28191 * 193.06598 * 16 2 1 42 42 H 1.09005 * 113.46510 * 105.56434 * 17 16 2 43 43 H 1.09000 * 113.52090 * 335.13393 * 17 16 2 44 44 H 0.97009 * 119.99966 * 354.93764 * 22 21 19 45 45 H 1.08994 * 113.46448 * 87.44180 * 27 18 17 46 46 H 1.09003 * 113.46594 * 217.87764 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3466 1.1702 0.1106 5 6 1.3917 2.4687 -0.1375 6 6 0.7476 2.6336 -1.4900 7 6 1.5089 2.5107 -2.6375 8 6 0.9194 2.6611 -3.8787 9 6 -0.4319 2.9353 -3.9739 10 6 -1.1952 3.0586 -2.8255 11 9 -2.5164 3.3261 -2.9174 12 6 -0.6046 2.9020 -1.5828 13 6 2.2029 3.6953 0.3121 14 6 1.6314 3.4547 1.7223 15 6 0.4425 2.7611 1.0365 16 6 2.1974 -1.2687 -0.0006 17 6 1.9059 -2.1633 -1.2134 18 7 1.9118 -3.3155 -0.2995 19 6 2.1801 -4.6544 -0.4026 20 1 2.5788 -5.0560 -1.3225 21 6 1.9393 -5.4954 0.6751 22 7 2.4492 -6.7087 0.6898 23 14 0.8915 -4.9054 2.1046 24 1 1.7600 -4.2595 3.1214 25 1 -0.1090 -3.9242 1.6130 26 1 0.1906 -6.0632 2.7156 27 6 1.4968 -2.3981 0.7724 28 1 -0.3633 0.0947 1.0233 29 1 -0.3634 0.8388 -0.5936 30 1 -0.3634 -0.9336 -0.4296 31 1 2.5649 2.2961 -2.5642 32 1 1.5151 2.5653 -4.7744 33 1 -0.8924 3.0524 -4.9438 34 1 -1.2000 2.9939 -0.6863 35 1 3.2816 3.5532 0.2466 36 1 1.8696 4.6291 -0.1406 37 1 1.3595 4.3714 2.2456 38 1 2.2366 2.7832 2.3315 39 1 -0.3712 3.4400 0.7815 40 1 0.0998 1.8653 1.5546 41 1 3.2576 -1.1543 0.2259 42 1 2.7159 -2.1834 -1.9426 43 1 0.9336 -1.9754 -1.6688 44 1 2.9312 -7.0417 -0.0834 45 1 0.4164 -2.2716 0.8413 46 1 1.9582 -2.6184 1.7351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043502559.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:48 Heat of formation + Delta-G solvation = 24.446058 kcal Electronic energy + Delta-G solvation = -29482.082741 eV Core-core repulsion = 25481.799246 eV Total energy + Delta-G solvation = -4000.283494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -49.87090 -42.42789 -40.64437 -39.43318 -38.04197 -36.11966 -34.41841 -32.37754 -31.57029 -30.05937 -28.16514 -27.34574 -27.03800 -26.66828 -24.76119 -23.60796 -23.04743 -22.19304 -20.81378 -19.71878 -19.51540 -18.85490 -18.00195 -17.50489 -17.20508 -17.05486 -16.83573 -16.64664 -16.50022 -16.04978 -15.84441 -15.34273 -15.27790 -14.97890 -14.58850 -14.35655 -14.03487 -13.71362 -13.66992 -13.61247 -13.47990 -13.21112 -13.16719 -12.98877 -12.92545 -12.71640 -12.52436 -12.30759 -12.01866 -11.87028 -11.54636 -11.45856 -11.31930 -11.25521 -10.96926 -10.84000 -9.92326 -9.65218 -9.62650 -9.30263 -8.67610 -5.52737 0.11143 0.19877 1.38173 1.44602 1.49738 1.64980 1.80139 2.52524 2.53536 2.98183 3.12914 3.18011 3.36340 3.43898 3.49138 3.57717 3.66642 3.84543 3.96450 4.04524 4.10490 4.15272 4.19951 4.24460 4.37065 4.46039 4.48880 4.53559 4.57448 4.65542 4.76131 4.77936 4.84158 4.90322 5.01064 5.04224 5.05984 5.10517 5.11164 5.12165 5.13104 5.31315 5.41763 5.47100 5.53648 5.88573 5.90065 6.33934 6.64210 7.05378 7.27016 8.19365 8.84598 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.003616 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.354240 B = 7740.858439 C = 8359.554080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.591 5.591 3 C 0.542 3.458 4 O -0.574 6.574 5 C -0.069 4.069 6 C -0.037 4.037 7 C -0.132 4.132 8 C -0.084 4.084 9 C -0.155 4.155 10 C 0.090 3.910 11 F -0.144 7.144 12 C -0.146 4.146 13 C -0.110 4.110 14 C -0.139 4.139 15 C -0.124 4.124 16 C 0.123 3.877 17 C 0.112 3.888 18 N -0.648 5.648 19 C -0.295 4.295 20 H 0.050 0.950 21 C -0.080 4.080 22 N -0.966 5.966 23 Si 1.100 2.900 24 H -0.281 1.281 25 H -0.244 1.244 26 H -0.300 1.300 27 C 0.094 3.906 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.125 0.875 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.247 0.753 45 H 0.076 0.924 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.281 29.071 -3.853 31.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.322 5.322 3 C 0.331 3.669 4 O -0.453 6.453 5 C -0.072 4.072 6 C -0.037 4.037 7 C -0.151 4.151 8 C -0.102 4.102 9 C -0.174 4.174 10 C 0.070 3.930 11 F -0.123 7.123 12 C -0.164 4.164 13 C -0.147 4.147 14 C -0.176 4.176 15 C -0.161 4.161 16 C 0.018 3.982 17 C -0.015 4.015 18 N -0.377 5.377 19 C -0.423 4.423 20 H 0.068 0.932 21 C -0.272 4.272 22 N -0.610 5.610 23 Si 0.924 3.076 24 H -0.208 1.208 25 H -0.168 1.168 26 H -0.228 1.228 27 C -0.032 4.032 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.228 28.400 -2.369 30.279 hybrid contribution 1.021 -0.667 -2.067 2.400 sum -9.208 27.733 -4.436 29.556 Atomic orbital electron populations 1.22355 0.77622 1.04483 1.03796 1.47741 1.08093 1.04434 1.71959 1.20333 0.86962 0.85043 0.74611 1.90671 1.16002 1.87513 1.51130 1.20882 0.99244 0.92980 0.94068 1.19081 0.92818 0.98763 0.93077 1.21202 1.00384 1.00728 0.92738 1.21208 0.94165 0.96713 0.98135 1.21425 0.94651 1.02680 0.98604 1.17794 0.77856 1.02350 0.94955 1.91504 1.32168 1.91471 1.97139 1.21178 0.94589 1.03130 0.97507 1.22952 0.99628 0.95607 0.96525 1.22847 0.97024 1.01787 0.95957 1.23315 0.97152 1.02403 0.93241 1.22885 0.96995 0.81048 0.97276 1.22901 0.99413 0.85162 0.93981 1.45845 1.80435 1.03126 1.08277 1.19939 1.38918 0.81979 1.01429 0.93231 1.27149 1.01622 0.94419 1.03995 1.71016 1.39486 1.19780 1.30744 0.83383 0.76179 0.75021 0.73007 1.20778 1.16802 1.22763 1.23293 0.98974 0.87555 0.93335 0.89889 0.88807 0.90857 0.86644 0.83087 0.83042 0.81982 0.91856 0.87159 0.88416 0.91827 0.85709 0.89788 0.87677 0.94096 0.92158 0.94360 0.90647 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 7.87 127.77 1.01 2.19 16 2 N -0.59 -16.23 3.11 -821.40 -2.56 -18.78 16 3 C 0.54 14.86 5.95 87.66 0.52 15.38 16 4 O -0.57 -20.45 15.47 -3.02 -0.05 -20.50 16 5 C -0.07 -1.27 0.49 -53.15 -0.03 -1.29 16 6 C -0.04 -0.63 3.84 -19.87 -0.08 -0.70 16 7 C -0.13 -2.46 9.35 22.27 0.21 -2.25 16 8 C -0.08 -1.27 10.04 22.26 0.22 -1.05 16 9 C -0.15 -2.24 10.03 22.31 0.22 -2.02 16 10 C 0.09 1.41 7.30 22.38 0.16 1.58 16 11 F -0.14 -2.50 17.27 44.97 0.78 -1.72 16 12 C -0.15 -2.05 7.52 22.31 0.17 -1.89 16 13 C -0.11 -1.86 7.11 31.21 0.22 -1.64 16 14 C -0.14 -2.04 7.81 31.21 0.24 -1.79 16 15 C -0.12 -1.57 5.72 31.12 0.18 -1.39 16 16 C 0.12 4.40 4.60 45.55 0.21 4.61 16 17 C 0.11 4.39 8.23 83.18 0.68 5.08 16 18 N -0.65 -31.63 3.63 -738.04 -2.68 -34.31 16 19 C -0.30 -17.42 11.04 84.03 0.93 -16.49 16 20 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 21 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 22 N -0.97 -62.94 13.70 21.65 0.30 -62.64 16 23 Si 1.10 52.47 25.48 68.60 1.75 54.22 16 24 H -0.28 -12.80 6.98 99.48 0.69 -12.10 16 25 H -0.24 -9.96 5.58 99.48 0.55 -9.41 16 26 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 27 C 0.09 3.74 5.00 83.26 0.42 4.15 16 28 H 0.08 1.32 6.94 -2.39 -0.02 1.30 16 29 H 0.09 1.53 3.94 -2.39 -0.01 1.52 16 30 H 0.07 1.62 5.96 -2.39 -0.01 1.60 16 31 H 0.12 2.46 7.99 -2.91 -0.02 2.43 16 32 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.16 1.52 5.92 -2.91 -0.02 1.51 16 35 H 0.06 1.40 7.35 -2.39 -0.02 1.38 16 36 H 0.11 1.40 8.09 -2.39 -0.02 1.38 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.12 0.90 6.18 -2.39 -0.01 0.89 16 40 H 0.08 1.07 5.94 -2.38 -0.01 1.05 16 41 H 0.11 4.23 7.26 -2.38 -0.02 4.21 16 42 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.06 2.13 7.05 -2.39 -0.02 2.12 16 44 H 0.25 16.21 8.73 -92.70 -0.81 15.40 16 45 H 0.08 2.66 5.31 -2.39 -0.01 2.65 16 46 H 0.05 1.97 6.11 -2.39 -0.01 1.95 16 Total: -1.00 -75.43 357.10 4.10 -71.33 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.81 Total: 14.25 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.76 Total: -1.84 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -4.94 Total: -115.74 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.72 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 1.75 Total: 54.22 kcal Total: -75.43 4.10 -71.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043502559.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.776 kcal (2) G-P(sol) polarization free energy of solvation -75.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds