Wall clock time and date at job start Tue Mar 31 2020 16:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00005 * 2 1 4 4 O 1.21286 * 119.99534 * 173.96589 * 3 2 1 5 5 C 1.50695 * 120.00264 * 353.97336 * 3 2 1 6 6 C 1.50703 * 112.84835 * 292.69844 * 5 3 2 7 7 C 1.38248 * 119.97496 * 125.32215 * 6 5 3 8 8 C 1.38197 * 120.01951 * 179.76338 * 7 6 5 9 9 C 1.38451 * 119.97879 * 0.51263 * 8 7 6 10 10 F 1.35100 * 120.02944 * 179.76772 * 9 8 7 11 11 C 1.38463 * 119.94943 * 359.73549 * 9 8 7 12 12 C 1.38198 * 119.97427 * 0.02562 * 11 9 8 13 13 C 1.53778 * 113.61870 * 161.49766 * 5 3 2 14 14 C 1.54053 * 86.98588 * 270.84039 * 13 5 3 15 15 C 1.53785 * 113.61184 * 63.88692 * 5 3 2 16 16 C 1.46503 * 119.99749 * 180.02562 * 2 1 3 17 17 C 1.53492 * 114.20811 * 299.99402 * 16 2 1 18 18 N 1.47056 * 87.98867 * 87.52190 * 17 16 2 19 19 C 1.36940 * 136.06326 * 207.09126 * 18 17 16 20 20 H 1.08000 * 119.99718 * 5.49806 * 19 18 17 21 21 C 1.38811 * 120.00339 * 185.49976 * 19 18 17 22 22 N 1.31618 * 120.00069 * 5.38928 * 21 19 18 23 23 Si 1.86802 * 119.99945 * 185.38043 * 21 19 18 24 24 H 1.48488 * 109.47451 * 265.00374 * 23 21 19 25 25 H 1.48495 * 109.46959 * 25.01086 * 23 21 19 26 26 H 1.48506 * 109.46633 * 145.00614 * 23 21 19 27 27 C 1.47072 * 87.88574 * 27.34371 * 18 17 16 28 28 H 1.08999 * 109.46361 * 275.33592 * 1 2 3 29 29 H 1.08996 * 109.47465 * 35.33560 * 1 2 3 30 30 H 1.09003 * 109.47285 * 155.34501 * 1 2 3 31 31 H 1.07997 * 119.98695 * 0.02562 * 7 6 5 32 32 H 1.07999 * 120.00645 * 180.25465 * 8 7 6 33 33 H 1.07998 * 120.01425 * 180.02562 * 11 9 8 34 34 H 1.07992 * 119.99338 * 180.02562 * 12 11 9 35 35 H 1.09002 * 113.60969 * 25.43227 * 13 5 3 36 36 H 1.08998 * 113.61983 * 156.33505 * 13 5 3 37 37 H 1.08994 * 113.61870 * 220.02026 * 14 13 5 38 38 H 1.09004 * 113.69176 * 89.12208 * 14 13 5 39 39 H 1.08997 * 113.61539 * 203.66524 * 15 5 3 40 40 H 1.08998 * 113.61816 * 334.49186 * 15 5 3 41 41 H 1.09003 * 113.41365 * 166.79439 * 16 2 1 42 42 H 1.09001 * 113.46349 * 332.74171 * 17 16 2 43 43 H 1.09001 * 113.52314 * 202.31585 * 17 16 2 44 44 H 0.96998 * 120.00135 * 179.97438 * 22 21 19 45 45 H 1.08995 * 113.46632 * 87.43744 * 27 18 17 46 46 H 1.09000 * 113.46924 * 217.88376 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3467 1.1700 0.1104 5 6 1.3917 2.4687 -0.1370 6 6 0.7553 2.6381 -1.4925 7 6 -0.5986 2.8998 -1.5920 8 6 -1.1823 3.0602 -2.8344 9 6 -0.4128 2.9483 -3.9799 10 9 -0.9833 3.1002 -5.1951 11 6 0.9421 2.6811 -3.8792 12 6 1.5247 2.5259 -2.6356 13 6 2.1996 3.6941 0.3218 14 6 1.6202 3.4480 1.7278 15 6 0.4356 2.7561 1.0327 16 6 2.1975 -1.2688 -0.0006 17 6 1.9061 -2.1643 1.2115 18 7 0.7743 -2.7260 0.4590 19 6 -0.4280 -3.3026 0.7707 20 1 -0.7569 -3.3437 1.7986 21 6 -1.2241 -3.8343 -0.2345 22 7 -0.7784 -3.8803 -1.4720 23 14 -2.9281 -4.4847 0.1693 24 1 -2.8568 -5.9498 0.4002 25 1 -3.4364 -3.8148 1.3931 26 1 -3.8456 -4.2064 -0.9648 27 6 1.5048 -2.4017 -0.7756 28 1 -0.3632 0.0956 1.0232 29 1 -0.3634 0.8383 -0.5943 30 1 -0.3634 -0.9340 -0.4287 31 1 -1.1994 2.9830 -0.6985 32 1 -2.2391 3.2686 -2.9117 33 1 1.5434 2.5940 -4.7720 34 1 2.5814 2.3180 -2.5567 35 1 3.2788 3.5530 0.2618 36 1 1.8683 4.6294 -0.1294 37 1 1.3448 4.3626 2.2528 38 1 2.2223 2.7746 2.3379 39 1 -0.3770 3.4355 0.7755 40 1 0.0906 1.8583 1.5455 41 1 3.2574 -1.1569 -0.2290 42 1 1.6040 -1.6085 2.0992 43 1 2.6939 -2.8893 1.4162 44 1 -1.3345 -4.2522 -2.1744 45 1 2.1871 -3.1891 -1.0957 46 1 0.8608 -2.0482 -1.5808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043502891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:55 Heat of formation + Delta-G solvation = 44.404956 kcal Electronic energy + Delta-G solvation = -29883.711934 eV Core-core repulsion = 25884.293922 eV Total energy + Delta-G solvation = -3999.418012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.91965 -41.22040 -39.04898 -38.09079 -36.73324 -34.06679 -32.13405 -31.28810 -30.89227 -28.04793 -26.57093 -25.89177 -25.68386 -24.60313 -23.46642 -22.87370 -21.95401 -21.19211 -19.07251 -18.08181 -17.88187 -17.07245 -16.62301 -16.29565 -15.94030 -15.68170 -15.57661 -15.04489 -14.84093 -14.37199 -14.32317 -13.77675 -13.72398 -13.67247 -13.38104 -12.97654 -12.70497 -12.64045 -12.45722 -12.41893 -12.10778 -11.84957 -11.58080 -11.35462 -11.16918 -11.07111 -10.91664 -10.85072 -10.67979 -10.53756 -10.30878 -10.14040 -9.91731 -9.55585 -9.46523 -9.16855 -8.87393 -8.50433 -7.98672 -6.95674 -5.86008 -3.17553 1.03426 1.15636 2.84158 3.32036 3.34449 3.38932 3.40936 3.48942 4.19318 4.37594 4.39107 4.52313 4.55580 4.66257 4.72300 4.81607 4.84683 5.14651 5.20543 5.30721 5.36777 5.40716 5.48102 5.57002 5.65485 5.81789 5.82735 5.83413 5.90745 5.99669 6.01413 6.05411 6.10506 6.13819 6.15778 6.21474 6.30618 6.42337 6.45531 6.54137 6.69725 6.79673 6.94532 7.10184 7.25006 7.44974 7.86549 7.95212 8.51590 8.95587 9.61622 10.56043 11.31792 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.004717 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.140560 B = 5935.024774 C = 7365.440779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.566 5.566 3 C 0.539 3.461 4 O -0.549 6.549 5 C -0.064 4.064 6 C -0.068 4.068 7 C -0.086 4.086 8 C -0.150 4.150 9 C 0.095 3.905 10 F -0.142 7.142 11 C -0.148 4.148 12 C -0.078 4.078 13 C -0.111 4.111 14 C -0.140 4.140 15 C -0.134 4.134 16 C 0.081 3.919 17 C 0.105 3.895 18 N -0.605 5.605 19 C -0.218 4.218 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.280 1.280 26 H -0.290 1.290 27 C 0.152 3.848 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.255 0.745 45 H 0.040 0.960 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.015 17.180 0.100 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.295 5.295 3 C 0.326 3.674 4 O -0.428 6.428 5 C -0.067 4.067 6 C -0.068 4.068 7 C -0.103 4.103 8 C -0.169 4.169 9 C 0.076 3.924 10 F -0.121 7.121 11 C -0.167 4.167 12 C -0.096 4.096 13 C -0.148 4.148 14 C -0.177 4.177 15 C -0.172 4.172 16 C -0.024 4.024 17 C -0.022 4.022 18 N -0.331 5.331 19 C -0.345 4.345 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.564 5.564 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.205 1.205 26 H -0.216 1.216 27 C 0.025 3.975 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.274 16.986 0.046 17.137 hybrid contribution -1.139 -0.804 -0.164 1.404 sum 1.136 16.182 -0.118 16.222 Atomic orbital electron populations 1.22164 0.78478 1.05204 1.01176 1.47231 1.07527 1.04400 1.70307 1.19636 0.87135 0.84196 0.76403 1.90639 1.14083 1.87056 1.50984 1.20856 0.98278 0.94900 0.92666 1.19396 0.93579 1.00318 0.93546 1.20967 0.94013 0.98078 0.97283 1.21102 1.00620 1.03728 0.91400 1.17731 0.91821 1.02650 0.80240 1.91492 1.85147 1.93217 1.42230 1.21109 0.93334 1.03062 0.99149 1.20890 1.00494 0.97378 0.90881 1.22897 1.00946 0.95374 0.95628 1.22863 0.97430 1.00894 0.96512 1.23232 0.96885 1.01849 0.95204 1.22738 0.95571 0.83564 1.00487 1.22825 0.90940 0.93557 0.94915 1.45839 1.13986 1.71252 1.02069 1.18910 0.90963 1.31286 0.93338 0.90174 1.24790 0.98965 1.00749 0.95700 1.69835 1.36564 1.50211 0.99808 0.86167 0.83942 0.78835 0.77242 1.21647 1.20506 1.21584 1.22418 0.92395 0.90633 0.92015 0.93265 0.92391 0.86932 0.84412 0.84639 0.84722 0.84995 0.89652 0.89460 0.90994 0.89882 0.88753 0.89886 0.88434 0.94058 0.94104 0.93535 0.94203 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 8.26 59.85 0.49 1.75 16 2 N -0.57 -10.05 3.12 -173.55 -0.54 -10.59 16 3 C 0.54 8.91 5.96 -10.99 -0.07 8.84 16 4 O -0.55 -10.40 15.52 5.55 0.09 -10.32 16 5 C -0.06 -0.81 0.49 -156.00 -0.08 -0.89 16 6 C -0.07 -0.84 3.87 -104.61 -0.41 -1.24 16 7 C -0.09 -0.95 7.53 -39.59 -0.30 -1.25 16 8 C -0.15 -1.70 10.03 -39.52 -0.40 -2.10 16 9 C 0.09 1.19 7.30 -39.42 -0.29 0.90 16 10 F -0.14 -1.87 17.27 2.25 0.04 -1.84 16 11 C -0.15 -1.80 10.03 -39.51 -0.40 -2.19 16 12 C -0.08 -1.00 9.35 -39.59 -0.37 -1.37 16 13 C -0.11 -1.23 7.11 -25.78 -0.18 -1.41 16 14 C -0.14 -1.45 7.81 -25.77 -0.20 -1.66 16 15 C -0.13 -1.44 5.70 -25.91 -0.15 -1.59 16 16 C 0.08 1.58 4.65 -67.68 -0.31 1.26 16 17 C 0.10 2.15 8.31 -8.52 -0.07 2.07 16 18 N -0.60 -14.54 2.46 -184.64 -0.45 -14.99 16 19 C -0.22 -5.71 10.17 -15.06 -0.15 -5.86 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 22 N -0.92 -25.96 11.74 55.49 0.65 -25.31 16 23 Si 0.91 21.18 29.56 -169.99 -5.02 16.15 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 C 0.15 3.43 6.27 -8.37 -0.05 3.38 16 28 H 0.05 0.83 6.91 -51.93 -0.36 0.47 16 29 H 0.06 0.88 3.95 -51.93 -0.21 0.67 16 30 H 0.11 2.45 5.06 -51.93 -0.26 2.19 16 31 H 0.14 1.25 5.92 -52.49 -0.31 0.94 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.13 1.68 8.00 -52.49 -0.42 1.26 16 35 H 0.08 1.07 7.35 -51.93 -0.38 0.69 16 36 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.81 6.19 -51.93 -0.32 0.48 16 40 H 0.08 0.99 5.89 -51.93 -0.31 0.68 16 41 H 0.10 1.85 7.35 -51.93 -0.38 1.46 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 1.69 6.72 -51.93 -0.35 1.34 16 LS Contribution 363.75 15.07 5.48 5.48 Total: -1.00 -29.92 363.75 -9.01 -38.92 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.22 Total: 4.05 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.02 Total: -1.57 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.34 Total: -50.88 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.92 -9.01 -38.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043502891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.329 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds