Wall clock time and date at job start Tue Mar 31 2020 16:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00005 * 2 1 4 4 O 1.21286 * 119.99534 * 173.96589 * 3 2 1 5 5 C 1.50695 * 120.00264 * 353.97336 * 3 2 1 6 6 C 1.50703 * 112.84835 * 292.69844 * 5 3 2 7 7 C 1.38248 * 119.97496 * 125.32215 * 6 5 3 8 8 C 1.38197 * 120.01951 * 179.76338 * 7 6 5 9 9 C 1.38451 * 119.97879 * 0.51263 * 8 7 6 10 10 F 1.35100 * 120.02944 * 179.76772 * 9 8 7 11 11 C 1.38463 * 119.94943 * 359.73549 * 9 8 7 12 12 C 1.38198 * 119.97427 * 0.02562 * 11 9 8 13 13 C 1.53778 * 113.61870 * 161.49766 * 5 3 2 14 14 C 1.54053 * 86.98588 * 270.84039 * 13 5 3 15 15 C 1.53785 * 113.61184 * 63.88692 * 5 3 2 16 16 C 1.46503 * 119.99749 * 180.02562 * 2 1 3 17 17 C 1.53492 * 114.20811 * 299.99402 * 16 2 1 18 18 N 1.47056 * 87.98867 * 87.52190 * 17 16 2 19 19 C 1.36940 * 136.06326 * 207.09126 * 18 17 16 20 20 H 1.08000 * 119.99718 * 5.49806 * 19 18 17 21 21 C 1.38811 * 120.00339 * 185.49976 * 19 18 17 22 22 N 1.31618 * 120.00069 * 5.38928 * 21 19 18 23 23 Si 1.86802 * 119.99945 * 185.38043 * 21 19 18 24 24 H 1.48488 * 109.47451 * 265.00374 * 23 21 19 25 25 H 1.48495 * 109.46959 * 25.01086 * 23 21 19 26 26 H 1.48506 * 109.46633 * 145.00614 * 23 21 19 27 27 C 1.47072 * 87.88574 * 27.34371 * 18 17 16 28 28 H 1.08999 * 109.46361 * 275.33592 * 1 2 3 29 29 H 1.08996 * 109.47465 * 35.33560 * 1 2 3 30 30 H 1.09003 * 109.47285 * 155.34501 * 1 2 3 31 31 H 1.07997 * 119.98695 * 0.02562 * 7 6 5 32 32 H 1.07999 * 120.00645 * 180.25465 * 8 7 6 33 33 H 1.07998 * 120.01425 * 180.02562 * 11 9 8 34 34 H 1.07992 * 119.99338 * 180.02562 * 12 11 9 35 35 H 1.09002 * 113.60969 * 25.43227 * 13 5 3 36 36 H 1.08998 * 113.61983 * 156.33505 * 13 5 3 37 37 H 1.08994 * 113.61870 * 220.02026 * 14 13 5 38 38 H 1.09004 * 113.69176 * 89.12208 * 14 13 5 39 39 H 1.08997 * 113.61539 * 203.66524 * 15 5 3 40 40 H 1.08998 * 113.61816 * 334.49186 * 15 5 3 41 41 H 1.09003 * 113.41365 * 166.79439 * 16 2 1 42 42 H 1.09001 * 113.46349 * 332.74171 * 17 16 2 43 43 H 1.09001 * 113.52314 * 202.31585 * 17 16 2 44 44 H 0.96998 * 120.00135 * 179.97438 * 22 21 19 45 45 H 1.08995 * 113.46632 * 87.43744 * 27 18 17 46 46 H 1.09000 * 113.46924 * 217.88376 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3467 1.1700 0.1104 5 6 1.3917 2.4687 -0.1370 6 6 0.7553 2.6381 -1.4925 7 6 -0.5986 2.8998 -1.5920 8 6 -1.1823 3.0602 -2.8344 9 6 -0.4128 2.9483 -3.9799 10 9 -0.9833 3.1002 -5.1951 11 6 0.9421 2.6811 -3.8792 12 6 1.5247 2.5259 -2.6356 13 6 2.1996 3.6941 0.3218 14 6 1.6202 3.4480 1.7278 15 6 0.4356 2.7561 1.0327 16 6 2.1975 -1.2688 -0.0006 17 6 1.9061 -2.1643 1.2115 18 7 0.7743 -2.7260 0.4590 19 6 -0.4280 -3.3026 0.7707 20 1 -0.7569 -3.3437 1.7986 21 6 -1.2241 -3.8343 -0.2345 22 7 -0.7784 -3.8803 -1.4720 23 14 -2.9281 -4.4847 0.1693 24 1 -2.8568 -5.9498 0.4002 25 1 -3.4364 -3.8148 1.3931 26 1 -3.8456 -4.2064 -0.9648 27 6 1.5048 -2.4017 -0.7756 28 1 -0.3632 0.0956 1.0232 29 1 -0.3634 0.8383 -0.5943 30 1 -0.3634 -0.9340 -0.4287 31 1 -1.1994 2.9830 -0.6985 32 1 -2.2391 3.2686 -2.9117 33 1 1.5434 2.5940 -4.7720 34 1 2.5814 2.3180 -2.5567 35 1 3.2788 3.5530 0.2618 36 1 1.8683 4.6294 -0.1294 37 1 1.3448 4.3626 2.2528 38 1 2.2223 2.7746 2.3379 39 1 -0.3770 3.4355 0.7755 40 1 0.0906 1.8583 1.5455 41 1 3.2574 -1.1569 -0.2290 42 1 1.6040 -1.6085 2.0992 43 1 2.6939 -2.8893 1.4162 44 1 -1.3345 -4.2522 -2.1744 45 1 2.1871 -3.1891 -1.0957 46 1 0.8608 -2.0482 -1.5808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043502891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:54 Heat of formation + Delta-G solvation = 29.732787 kcal Electronic energy + Delta-G solvation = -29884.348167 eV Core-core repulsion = 25884.293922 eV Total energy + Delta-G solvation = -4000.054245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.90471 -42.35264 -40.47069 -39.31553 -37.92204 -35.60825 -34.06989 -32.19919 -31.85158 -29.88261 -27.88114 -27.11678 -26.71121 -26.32035 -25.01688 -23.90453 -23.05428 -22.38434 -20.48191 -19.48161 -18.82802 -18.67072 -18.01934 -17.35113 -17.25047 -16.94500 -16.64160 -16.55251 -16.12222 -15.85981 -15.47031 -15.36436 -15.02671 -14.60250 -14.52614 -14.38851 -14.10392 -13.97017 -13.71162 -13.52232 -13.26645 -13.11839 -13.00899 -12.80351 -12.72172 -12.61641 -12.43673 -12.05149 -11.97910 -11.81708 -11.72672 -11.44002 -11.32869 -11.22993 -10.97615 -10.70915 -10.08448 -9.53605 -9.46604 -8.91681 -7.90029 -5.22267 0.07824 0.24454 1.48209 1.49272 1.53559 1.58194 1.98766 2.48023 2.53475 3.26026 3.31365 3.42137 3.45569 3.52392 3.60142 3.68095 3.78983 3.83185 3.93927 3.95124 4.26986 4.37675 4.40163 4.42793 4.47573 4.56336 4.70622 4.77253 4.79022 4.85934 4.88873 4.94222 4.98024 5.03513 5.07997 5.13288 5.14453 5.15443 5.18192 5.25030 5.33447 5.45372 5.46119 5.49702 5.70952 5.87796 5.88097 6.54291 6.90818 7.14694 7.60540 8.60173 9.27970 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.004717 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.140560 B = 5935.024774 C = 7365.440779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.572 5.572 3 C 0.539 3.461 4 O -0.576 6.576 5 C -0.068 4.068 6 C -0.074 4.074 7 C -0.083 4.083 8 C -0.147 4.147 9 C 0.078 3.922 10 F -0.149 7.149 11 C -0.153 4.153 12 C -0.092 4.092 13 C -0.105 4.105 14 C -0.135 4.135 15 C -0.127 4.127 16 C 0.101 3.899 17 C 0.109 3.891 18 N -0.622 5.622 19 C -0.219 4.219 20 H 0.084 0.916 21 C -0.056 4.056 22 N -0.950 5.950 23 Si 0.970 3.030 24 H -0.294 1.294 25 H -0.264 1.264 26 H -0.295 1.295 27 C 0.156 3.844 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.124 0.876 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.126 0.874 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.248 0.752 45 H 0.028 0.972 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 19.170 1.493 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.301 5.301 3 C 0.328 3.672 4 O -0.456 6.456 5 C -0.071 4.071 6 C -0.074 4.074 7 C -0.100 4.100 8 C -0.166 4.166 9 C 0.059 3.941 10 F -0.127 7.127 11 C -0.172 4.172 12 C -0.110 4.110 13 C -0.143 4.143 14 C -0.172 4.172 15 C -0.164 4.164 16 C -0.005 4.005 17 C -0.017 4.017 18 N -0.348 5.348 19 C -0.347 4.347 20 H 0.102 0.898 21 C -0.250 4.250 22 N -0.599 5.599 23 Si 0.799 3.201 24 H -0.221 1.221 25 H -0.188 1.188 26 H -0.222 1.222 27 C 0.029 3.971 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.182 0.818 32 H 0.175 0.825 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.144 0.856 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.949 19.000 1.469 19.080 hybrid contribution -0.631 -1.405 -0.607 1.656 sum 0.318 17.595 0.862 17.619 Atomic orbital electron populations 1.21997 0.78122 1.03846 1.01665 1.47302 1.07695 1.04257 1.70844 1.20301 0.86991 0.84911 0.74948 1.90623 1.15481 1.87551 1.51921 1.20864 0.99287 0.93128 0.93841 1.19454 0.94239 1.00731 0.93008 1.21233 0.93465 0.97140 0.98196 1.21399 1.01655 1.02586 0.90935 1.17973 0.92161 1.03441 0.80534 1.91474 1.85204 1.93359 1.42709 1.21244 0.93635 1.02864 0.99458 1.20920 1.00367 0.98243 0.91483 1.22936 0.99666 0.95462 0.96220 1.22823 0.96755 1.01618 0.96024 1.23313 0.97422 1.02074 0.93622 1.22434 0.95667 0.83712 0.98641 1.22901 0.89954 0.93662 0.95229 1.46001 1.14479 1.71055 1.03301 1.19205 0.91857 1.30175 0.93449 0.89787 1.25496 1.02283 1.01657 0.95572 1.70010 1.37620 1.51635 1.00607 0.85182 0.79892 0.77771 0.77245 1.22129 1.18809 1.22179 1.22291 0.91834 0.91621 0.91360 0.92456 0.90055 0.91149 0.81753 0.82454 0.83790 0.85817 0.91551 0.87083 0.88234 0.91873 0.85590 0.90923 0.87807 0.93306 0.93010 0.94330 0.95447 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.93 8.26 127.77 1.06 3.99 16 2 N -0.57 -20.07 3.12 -821.39 -2.56 -22.63 16 3 C 0.54 17.41 5.96 87.66 0.52 17.93 16 4 O -0.58 -21.72 15.52 -3.05 -0.05 -21.76 16 5 C -0.07 -1.60 0.49 -53.15 -0.03 -1.63 16 6 C -0.07 -1.68 3.87 -19.86 -0.08 -1.76 16 7 C -0.08 -1.58 7.53 22.26 0.17 -1.41 16 8 C -0.15 -2.97 10.03 22.31 0.22 -2.74 16 9 C 0.08 1.86 7.30 22.37 0.16 2.03 16 10 F -0.15 -3.79 17.27 44.97 0.78 -3.01 16 11 C -0.15 -3.65 10.03 22.31 0.22 -3.42 16 12 C -0.09 -2.28 9.35 22.26 0.21 -2.07 16 13 C -0.11 -2.09 7.11 31.21 0.22 -1.87 16 14 C -0.13 -2.42 7.81 31.21 0.24 -2.17 16 15 C -0.13 -2.30 5.70 31.12 0.18 -2.12 16 16 C 0.10 3.94 4.65 45.55 0.21 4.15 16 17 C 0.11 4.41 8.31 83.18 0.69 5.10 16 18 N -0.62 -30.13 2.46 -738.07 -1.82 -31.94 16 19 C -0.22 -11.49 10.17 84.03 0.85 -10.64 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.06 -3.04 5.50 84.86 0.47 -2.58 16 22 N -0.95 -55.05 11.74 21.65 0.25 -54.79 16 23 Si 0.97 43.61 29.56 68.60 2.03 45.63 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 27 C 0.16 7.24 6.27 83.26 0.52 7.76 16 28 H 0.06 1.84 6.91 -2.39 -0.02 1.82 16 29 H 0.08 2.33 3.95 -2.39 -0.01 2.32 16 30 H 0.07 3.09 5.06 -2.39 -0.01 3.08 16 31 H 0.17 2.21 5.92 -2.91 -0.02 2.19 16 32 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.12 3.20 8.00 -2.91 -0.02 3.18 16 35 H 0.07 1.59 7.35 -2.39 -0.02 1.58 16 36 H 0.11 1.70 8.09 -2.39 -0.02 1.68 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 39 H 0.13 1.50 6.19 -2.39 -0.01 1.49 16 40 H 0.07 1.51 5.89 -2.39 -0.01 1.49 16 41 H 0.10 3.94 7.35 -2.39 -0.02 3.92 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 45 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.04 2.14 6.72 -2.39 -0.02 2.12 16 Total: -1.00 -65.49 363.75 5.49 -60.00 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.01 Total: 19.95 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.85 Total: 8.56 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -4.12 Total: -109.37 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.76 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.01 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -65.49 5.49 -60.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043502891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.734 kcal (2) G-P(sol) polarization free energy of solvation -65.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds