Wall clock time and date at job start Tue Mar 31 2020 16:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34776 * 120.00082 * 2 1 4 4 O 1.21277 * 120.00247 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00063 * 359.97438 * 3 2 1 6 6 C 1.53787 * 113.61062 * 277.49738 * 5 3 2 7 7 C 1.53779 * 87.07855 * 220.01800 * 6 5 3 8 8 C 1.50699 * 113.61331 * 139.98287 * 7 6 5 9 9 C 1.38246 * 119.97351 * 322.23284 * 8 7 6 10 10 C 1.38195 * 120.02284 * 179.73121 * 9 8 7 11 11 C 1.38463 * 119.97635 * 0.55749 * 10 9 8 12 12 F 1.35100 * 120.02647 * 179.68900 * 11 10 9 13 13 C 1.38457 * 119.94638 * 359.71379 * 11 10 9 14 14 C 1.38200 * 119.97628 * 359.97438 * 13 11 10 15 15 C 1.53776 * 87.08350 * 25.43141 * 7 6 5 16 16 C 1.46495 * 119.99778 * 179.97438 * 2 1 3 17 17 C 1.53495 * 114.20832 * 59.99909 * 16 2 1 18 18 N 1.47068 * 87.98832 * 220.14778 * 17 16 2 19 19 C 1.36931 * 136.05648 * 207.08648 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72253 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.47071 * 87.88415 * 27.34050 * 18 17 16 28 28 H 1.09004 * 109.47035 * 270.00266 * 1 2 3 29 29 H 1.08999 * 109.46895 * 30.00152 * 1 2 3 30 30 H 1.08993 * 109.46792 * 149.99840 * 1 2 3 31 31 H 1.08998 * 112.85117 * 48.79649 * 5 3 2 32 32 H 1.08994 * 113.61643 * 334.56811 * 6 5 3 33 33 H 1.09002 * 113.60969 * 105.46972 * 6 5 3 34 34 H 1.09001 * 113.61716 * 270.88268 * 7 6 5 35 35 H 1.07997 * 119.98311 * 359.97277 * 9 8 7 36 36 H 1.07999 * 120.01481 * 180.25153 * 10 9 8 37 37 H 1.08003 * 120.01186 * 179.97438 * 13 11 10 38 38 H 1.07993 * 119.98806 * 179.97438 * 14 13 11 39 39 H 1.08997 * 113.62031 * 220.01871 * 15 7 6 40 40 H 1.09007 * 113.61251 * 89.11502 * 15 7 6 41 41 H 1.09000 * 113.28270 * 193.07148 * 16 2 1 42 42 H 1.09004 * 113.46737 * 105.36824 * 17 16 2 43 43 H 1.08995 * 113.47006 * 334.93122 * 17 16 2 44 44 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 45 45 H 1.08998 * 113.46338 * 87.43811 * 27 18 17 46 46 H 1.08993 * 113.47050 * 217.87717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 0.9188 2.9135 -1.3979 7 6 1.3048 4.3447 -0.9887 8 6 1.9683 5.1296 -2.0909 9 6 2.8511 4.5025 -2.9504 10 6 3.4558 5.2199 -3.9650 11 6 3.1861 6.5699 -4.1134 12 9 3.7816 7.2737 -5.1010 13 6 2.3061 7.1981 -3.2485 14 6 1.6976 6.4772 -2.2386 15 6 2.2977 3.7103 -0.0005 16 6 2.1975 -1.2687 0.0006 17 6 1.9060 -2.1643 -1.2114 18 7 1.9168 -3.3164 -0.2973 19 6 2.1883 -4.6545 -0.4008 20 1 2.4783 -5.0748 -1.3525 21 6 2.0970 -5.4698 0.7191 22 7 1.7442 -4.9575 1.8790 23 14 2.4749 -7.2939 0.5797 24 1 3.9193 -7.5214 0.8387 25 1 1.6691 -8.0439 1.5764 26 1 2.1365 -7.7664 -0.7869 27 6 1.5015 -2.3999 0.7753 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 0.6005 2.5083 0.7548 32 1 1.5271 2.5121 -2.2084 33 1 -0.1502 2.7800 -1.5635 34 1 0.4970 4.8933 -0.5043 35 1 3.0651 3.4507 -2.8312 36 1 4.1423 4.7290 -4.6388 37 1 2.0954 8.2512 -3.3630 38 1 1.0115 6.9671 -1.5637 39 1 2.3419 4.2201 0.9619 40 1 3.2831 3.5267 -0.4290 41 1 3.2576 -1.1541 0.2270 42 1 2.7145 -2.1825 -1.9423 43 1 0.9320 -1.9786 -1.6642 44 1 1.6800 -5.5273 2.6614 45 1 0.4209 -2.2763 0.8463 46 1 1.9653 -2.6187 1.7370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044371847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:03 Heat of formation + Delta-G solvation = 29.731879 kcal Electronic energy + Delta-G solvation = -27711.582060 eV Core-core repulsion = 23711.527776 eV Total energy + Delta-G solvation = -4000.054284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.14837 -40.86086 -39.48557 -38.20734 -36.90665 -34.48161 -32.06793 -31.47451 -31.07433 -27.98291 -26.77907 -26.17584 -25.90586 -24.62033 -23.68604 -23.29557 -22.17958 -20.16060 -19.24707 -18.52682 -18.00345 -17.32234 -16.82270 -16.52411 -16.20844 -15.85432 -15.57076 -15.37170 -14.99829 -14.77508 -14.52237 -13.87959 -13.84376 -13.57959 -13.49012 -13.26967 -12.92438 -12.69549 -12.49485 -12.30706 -12.15168 -11.92205 -11.82142 -11.56335 -11.49966 -11.33949 -11.03631 -10.94249 -10.84992 -10.78780 -10.66325 -10.20781 -10.10974 -9.48267 -9.41537 -9.37792 -8.86374 -8.78610 -8.11176 -6.95531 -5.82763 -3.15964 0.81615 0.92455 2.81054 3.22624 3.27334 3.37566 3.42130 3.43690 3.97345 4.21494 4.30022 4.42444 4.44555 4.48852 4.58855 4.63434 4.77016 4.92927 4.96222 5.05278 5.25339 5.29834 5.34295 5.40752 5.47575 5.50397 5.56577 5.58769 5.70232 5.70717 5.76178 5.81944 5.83209 5.86380 5.95558 6.06075 6.11646 6.17353 6.34044 6.40759 6.54531 6.58658 6.76472 7.13601 7.30367 7.47793 7.76725 7.91067 8.45850 8.97617 9.63971 10.55478 11.34797 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.002083 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.268083 B =13436.600500 C =14040.926385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.595 5.595 3 C 0.519 3.481 4 O -0.545 6.545 5 C -0.137 4.137 6 C -0.115 4.115 7 C -0.074 4.074 8 C -0.077 4.077 9 C -0.084 4.084 10 C -0.150 4.150 11 C 0.090 3.910 12 F -0.143 7.143 13 C -0.154 4.154 14 C -0.088 4.088 15 C -0.106 4.106 16 C 0.085 3.915 17 C 0.107 3.893 18 N -0.604 5.604 19 C -0.218 4.218 20 H 0.083 0.917 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.916 3.084 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.149 3.851 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.042 0.958 43 H 0.034 0.966 44 H 0.255 0.745 45 H 0.030 0.970 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 24.711 -6.929 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.307 3.693 4 O -0.423 6.423 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.093 4.093 8 C -0.077 4.077 9 C -0.102 4.102 10 C -0.168 4.168 11 C 0.070 3.930 12 F -0.122 7.122 13 C -0.173 4.173 14 C -0.106 4.106 15 C -0.144 4.144 16 C -0.019 4.019 17 C -0.021 4.021 18 N -0.330 5.330 19 C -0.345 4.345 20 H 0.101 0.899 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.746 3.254 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.022 3.978 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.136 0.864 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.917 24.339 -6.845 25.584 hybrid contribution -0.008 -0.954 -0.198 0.975 sum -3.925 23.384 -7.043 24.735 Atomic orbital electron populations 1.21804 0.79989 1.02953 1.01902 1.47921 1.06821 1.06124 1.71849 1.20403 0.87869 0.84998 0.76044 1.90669 1.13981 1.87316 1.50298 1.22744 1.00118 0.93035 0.99933 1.23029 1.02055 0.94478 0.95710 1.21536 0.98604 0.94438 0.94674 1.19796 0.97353 0.93850 0.96687 1.20998 0.95179 1.00580 0.93428 1.21181 1.02467 0.92598 1.00584 1.17751 0.96384 0.90316 0.88505 1.91495 1.82214 1.78739 1.59712 1.21122 0.98636 1.01014 0.96503 1.20915 0.99122 0.93424 0.97133 1.22941 0.98438 0.93604 0.99397 1.23790 0.97938 0.80135 0.99989 1.22811 0.98057 0.87296 0.93902 1.45269 1.78543 1.03208 1.05968 1.18909 1.39696 0.80507 0.95415 0.89885 1.24830 1.01663 0.98438 0.95477 1.69824 1.52948 1.34548 0.99275 0.86063 0.77890 0.84279 0.77183 1.21373 1.21573 1.20589 1.22509 0.95968 0.84066 0.95220 0.92541 0.91482 0.90428 0.86889 0.89149 0.90224 0.87885 0.84645 0.84698 0.84896 0.85024 0.90706 0.88323 0.86418 0.93967 0.94887 0.93521 0.95234 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 8.79 59.85 0.53 1.44 16 2 N -0.60 -9.22 3.12 -173.55 -0.54 -9.77 16 3 C 0.52 7.76 7.20 -10.98 -0.08 7.68 16 4 O -0.54 -10.25 15.41 5.56 0.09 -10.17 16 5 C -0.14 -1.36 2.79 -90.96 -0.25 -1.61 16 6 C -0.12 -0.93 6.29 -25.92 -0.16 -1.10 16 7 C -0.07 -0.54 3.98 -90.96 -0.36 -0.90 16 8 C -0.08 -0.62 5.29 -104.62 -0.55 -1.18 16 9 C -0.08 -0.76 8.59 -39.59 -0.34 -1.10 16 10 C -0.15 -1.37 10.03 -39.51 -0.40 -1.76 16 11 C 0.09 0.85 7.30 -39.42 -0.29 0.56 16 12 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 13 C -0.15 -1.22 10.03 -39.51 -0.40 -1.62 16 14 C -0.09 -0.64 9.71 -39.59 -0.38 -1.02 16 15 C -0.11 -1.00 6.87 -25.92 -0.18 -1.17 16 16 C 0.09 1.69 4.57 -67.68 -0.31 1.38 16 17 C 0.11 2.22 8.24 -8.50 -0.07 2.15 16 18 N -0.60 -15.57 3.78 -184.60 -0.70 -16.27 16 19 C -0.22 -6.12 10.75 -15.06 -0.16 -6.28 16 20 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -27.15 11.50 55.49 0.64 -26.52 16 23 Si 0.92 22.04 29.55 -169.99 -5.02 17.01 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.15 3.46 6.84 -8.36 -0.06 3.40 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.58 5.79 -51.93 -0.30 0.28 16 30 H 0.08 1.02 6.17 -51.93 -0.32 0.69 16 31 H 0.11 0.92 7.85 -51.93 -0.41 0.51 16 32 H 0.09 0.84 6.27 -51.93 -0.33 0.51 16 33 H 0.08 0.52 7.68 -51.93 -0.40 0.12 16 34 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.14 1.24 6.67 -52.49 -0.35 0.89 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 38 H 0.13 0.64 8.05 -52.49 -0.42 0.22 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.14 7.00 -51.92 -0.36 0.77 16 41 H 0.12 2.58 7.29 -51.93 -0.38 2.20 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.64 6.96 -51.93 -0.36 0.28 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.03 0.67 6.57 -51.93 -0.34 0.33 16 46 H 0.07 1.97 7.10 -51.93 -0.37 1.60 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -33.11 372.88 -9.86 -42.97 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.42 Total: -0.01 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.56 Total: -1.44 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.60 Total: -52.55 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.11 -9.86 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044371847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.705 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds