Wall clock time and date at job start Tue Mar 31 2020 16:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34776 * 120.00082 * 2 1 4 4 O 1.21277 * 120.00247 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00063 * 359.97438 * 3 2 1 6 6 C 1.53787 * 113.61062 * 277.49738 * 5 3 2 7 7 C 1.53779 * 87.07855 * 220.01800 * 6 5 3 8 8 C 1.50699 * 113.61331 * 139.98287 * 7 6 5 9 9 C 1.38246 * 119.97351 * 322.23284 * 8 7 6 10 10 C 1.38195 * 120.02284 * 179.73121 * 9 8 7 11 11 C 1.38463 * 119.97635 * 0.55749 * 10 9 8 12 12 F 1.35100 * 120.02647 * 179.68900 * 11 10 9 13 13 C 1.38457 * 119.94638 * 359.71379 * 11 10 9 14 14 C 1.38200 * 119.97628 * 359.97438 * 13 11 10 15 15 C 1.53776 * 87.08350 * 25.43141 * 7 6 5 16 16 C 1.46495 * 119.99778 * 179.97438 * 2 1 3 17 17 C 1.53495 * 114.20832 * 59.99909 * 16 2 1 18 18 N 1.47068 * 87.98832 * 220.14778 * 17 16 2 19 19 C 1.36931 * 136.05648 * 207.08648 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72253 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.47071 * 87.88415 * 27.34050 * 18 17 16 28 28 H 1.09004 * 109.47035 * 270.00266 * 1 2 3 29 29 H 1.08999 * 109.46895 * 30.00152 * 1 2 3 30 30 H 1.08993 * 109.46792 * 149.99840 * 1 2 3 31 31 H 1.08998 * 112.85117 * 48.79649 * 5 3 2 32 32 H 1.08994 * 113.61643 * 334.56811 * 6 5 3 33 33 H 1.09002 * 113.60969 * 105.46972 * 6 5 3 34 34 H 1.09001 * 113.61716 * 270.88268 * 7 6 5 35 35 H 1.07997 * 119.98311 * 359.97277 * 9 8 7 36 36 H 1.07999 * 120.01481 * 180.25153 * 10 9 8 37 37 H 1.08003 * 120.01186 * 179.97438 * 13 11 10 38 38 H 1.07993 * 119.98806 * 179.97438 * 14 13 11 39 39 H 1.08997 * 113.62031 * 220.01871 * 15 7 6 40 40 H 1.09007 * 113.61251 * 89.11502 * 15 7 6 41 41 H 1.09000 * 113.28270 * 193.07148 * 16 2 1 42 42 H 1.09004 * 113.46737 * 105.36824 * 17 16 2 43 43 H 1.08995 * 113.47006 * 334.93122 * 17 16 2 44 44 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 45 45 H 1.08998 * 113.46338 * 87.43811 * 27 18 17 46 46 H 1.08993 * 113.47050 * 217.87717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1672 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 0.9188 2.9135 -1.3979 7 6 1.3048 4.3447 -0.9887 8 6 1.9683 5.1296 -2.0909 9 6 2.8511 4.5025 -2.9504 10 6 3.4558 5.2199 -3.9650 11 6 3.1861 6.5699 -4.1134 12 9 3.7816 7.2737 -5.1010 13 6 2.3061 7.1981 -3.2485 14 6 1.6976 6.4772 -2.2386 15 6 2.2977 3.7103 -0.0005 16 6 2.1975 -1.2687 0.0006 17 6 1.9060 -2.1643 -1.2114 18 7 1.9168 -3.3164 -0.2973 19 6 2.1883 -4.6545 -0.4008 20 1 2.4783 -5.0748 -1.3525 21 6 2.0970 -5.4698 0.7191 22 7 1.7442 -4.9575 1.8790 23 14 2.4749 -7.2939 0.5797 24 1 3.9193 -7.5214 0.8387 25 1 1.6691 -8.0439 1.5764 26 1 2.1365 -7.7664 -0.7869 27 6 1.5015 -2.3999 0.7753 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8899 -0.5138 31 1 0.6005 2.5083 0.7548 32 1 1.5271 2.5121 -2.2084 33 1 -0.1502 2.7800 -1.5635 34 1 0.4970 4.8933 -0.5043 35 1 3.0651 3.4507 -2.8312 36 1 4.1423 4.7290 -4.6388 37 1 2.0954 8.2512 -3.3630 38 1 1.0115 6.9671 -1.5637 39 1 2.3419 4.2201 0.9619 40 1 3.2831 3.5267 -0.4290 41 1 3.2576 -1.1541 0.2270 42 1 2.7145 -2.1825 -1.9423 43 1 0.9320 -1.9786 -1.6642 44 1 1.6800 -5.5273 2.6614 45 1 0.4209 -2.2763 0.8463 46 1 1.9653 -2.6187 1.7370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044371847.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:02 Heat of formation + Delta-G solvation = 11.084913 kcal Electronic energy + Delta-G solvation = -27712.390653 eV Core-core repulsion = 23711.527776 eV Total energy + Delta-G solvation = -4000.862877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.88282 -41.79792 -40.59015 -39.47084 -37.92892 -35.90556 -34.06577 -32.09185 -31.78507 -29.79342 -27.87237 -27.27046 -26.59173 -26.40677 -25.03378 -24.08427 -23.21508 -21.34308 -20.29374 -19.72416 -18.91940 -18.69954 -18.22392 -17.52419 -17.19872 -16.95248 -16.58937 -16.46803 -16.19209 -15.98938 -15.65183 -15.36605 -14.67361 -14.58061 -14.42358 -14.18176 -13.96975 -13.78743 -13.70115 -13.42676 -13.30655 -13.17222 -13.03578 -12.89101 -12.86827 -12.66217 -12.59952 -12.21853 -12.08455 -11.97275 -11.71475 -11.51636 -11.39388 -11.31567 -10.92665 -10.58175 -10.02986 -9.49652 -9.43832 -8.99855 -7.96212 -5.31031 0.16448 0.31173 1.44354 1.47241 1.55574 1.65254 2.02645 2.47008 2.60373 3.25944 3.32265 3.43648 3.50461 3.61227 3.71120 3.77576 3.82953 3.97495 4.00065 4.07190 4.21265 4.27152 4.36843 4.38273 4.43609 4.50949 4.66903 4.73318 4.76301 4.82919 4.85611 4.91214 4.98879 5.01389 5.08729 5.11849 5.15915 5.17066 5.20981 5.23427 5.32396 5.42480 5.45656 5.69366 5.75103 5.86168 5.97099 6.55078 6.84747 7.25537 7.53008 8.51669 9.21409 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.002083 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.268083 B =13436.600500 C =14040.926385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.513 3.487 4 O -0.593 6.593 5 C -0.130 4.130 6 C -0.112 4.112 7 C -0.056 4.056 8 C -0.081 4.081 9 C -0.096 4.096 10 C -0.163 4.163 11 C 0.068 3.932 12 F -0.153 7.153 13 C -0.154 4.154 14 C -0.081 4.081 15 C -0.113 4.113 16 C 0.110 3.890 17 C 0.114 3.886 18 N -0.638 5.638 19 C -0.232 4.232 20 H 0.087 0.913 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.985 3.015 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.266 1.266 27 C 0.155 3.845 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.251 0.749 45 H 0.041 0.959 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 26.664 -7.206 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.328 5.328 3 C 0.304 3.696 4 O -0.473 6.473 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.074 4.074 8 C -0.081 4.081 9 C -0.114 4.114 10 C -0.182 4.182 11 C 0.049 3.951 12 F -0.132 7.132 13 C -0.173 4.173 14 C -0.098 4.098 15 C -0.151 4.151 16 C 0.005 3.995 17 C -0.013 4.013 18 N -0.364 5.364 19 C -0.360 4.360 20 H 0.105 0.895 21 C -0.259 4.259 22 N -0.600 5.600 23 Si 0.812 3.188 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.191 1.191 27 C 0.028 3.972 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.183 0.817 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.447 26.331 -7.155 28.037 hybrid contribution 0.812 -1.486 -0.131 1.699 sum -5.635 24.844 -7.286 26.497 Atomic orbital electron populations 1.22064 0.77270 1.04499 1.03129 1.47941 1.08334 1.04637 1.71886 1.21412 0.87622 0.86235 0.74349 1.90653 1.16455 1.88037 1.52183 1.22894 1.00436 0.89487 1.02252 1.23057 1.03443 0.94720 0.93755 1.21540 0.98349 0.94037 0.93469 1.19973 0.96998 0.94543 0.96580 1.21026 0.96033 1.00321 0.94063 1.21276 1.02955 0.92949 1.01043 1.18020 0.97437 0.90505 0.89111 1.91464 1.82580 1.78895 1.60280 1.21424 0.97750 1.02080 0.96001 1.21266 0.98822 0.92841 0.96912 1.22938 0.97573 0.93973 1.00598 1.22991 0.96541 0.81846 0.98164 1.22892 0.99136 0.85520 0.93714 1.45588 1.79023 1.03567 1.08245 1.19300 1.39059 0.81957 0.95670 0.89512 1.25713 1.02142 1.02883 0.95195 1.70012 1.54431 1.35801 0.99790 0.84995 0.77321 0.78894 0.77594 1.21316 1.21719 1.19070 1.22410 0.96354 0.85104 0.93314 0.91493 0.87271 0.91522 0.83701 0.90891 0.87294 0.84372 0.85629 0.84715 0.82954 0.81709 0.89483 0.91355 0.89286 0.94028 0.92291 0.94048 0.94116 0.94681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 8.79 127.77 1.12 2.63 16 2 N -0.60 -17.89 3.12 -821.38 -2.56 -20.44 16 3 C 0.51 14.92 7.20 87.66 0.63 15.55 16 4 O -0.59 -22.97 15.41 -3.02 -0.05 -23.02 16 5 C -0.13 -2.18 2.79 -11.01 -0.03 -2.21 16 6 C -0.11 -1.41 6.29 31.12 0.20 -1.22 16 7 C -0.06 -0.59 3.98 -11.02 -0.04 -0.64 16 8 C -0.08 -1.11 5.29 -19.86 -0.11 -1.21 16 9 C -0.10 -1.71 8.59 22.26 0.19 -1.52 16 10 C -0.16 -3.04 10.03 22.31 0.22 -2.82 16 11 C 0.07 1.26 7.30 22.38 0.16 1.42 16 12 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 13 C -0.15 -2.09 10.03 22.31 0.22 -1.86 16 14 C -0.08 -0.88 9.71 22.26 0.22 -0.66 16 15 C -0.11 -1.87 6.87 31.12 0.21 -1.66 16 16 C 0.11 4.45 4.57 45.55 0.21 4.66 16 17 C 0.11 4.74 8.24 83.18 0.69 5.42 16 18 N -0.64 -33.51 3.78 -737.95 -2.79 -36.30 16 19 C -0.23 -13.23 10.75 84.04 0.90 -12.33 16 20 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 22 N -0.95 -57.80 11.50 21.65 0.25 -57.55 16 23 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.15 7.37 6.84 83.27 0.57 7.94 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.11 1.37 5.79 -2.39 -0.01 1.35 16 30 H 0.07 1.57 6.17 -2.39 -0.01 1.56 16 31 H 0.15 1.59 7.85 -2.39 -0.02 1.57 16 32 H 0.07 1.22 6.27 -2.39 -0.01 1.21 16 33 H 0.11 0.79 7.68 -2.39 -0.02 0.77 16 34 H 0.14 0.60 8.09 -2.39 -0.02 0.58 16 35 H 0.13 2.40 6.67 -2.91 -0.02 2.39 16 36 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 38 H 0.17 0.70 8.05 -2.91 -0.02 0.68 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.58 7.00 -2.38 -0.02 1.57 16 41 H 0.09 4.12 7.29 -2.39 -0.02 4.10 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 2.19 6.96 -2.39 -0.02 2.17 16 44 H 0.25 14.71 8.31 -92.70 -0.77 13.93 16 45 H 0.04 1.84 6.57 -2.39 -0.02 1.83 16 46 H 0.03 1.93 7.10 -2.39 -0.02 1.91 16 Total: -1.00 -76.20 372.88 4.49 -71.71 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.00 Total: 11.94 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.83 Total: 8.16 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -5.10 Total: -114.30 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -76.20 4.49 -71.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044371847.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.791 kcal (2) G-P(sol) polarization free energy of solvation -76.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds