Wall clock time and date at job start Tue Mar 31 2020 16:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34780 * 119.99770 * 2 1 4 4 O 1.21280 * 119.99419 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.99892 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.46677 * 179.97438 * 5 3 2 7 7 H 1.08999 * 110.43979 * 305.69982 * 6 5 3 8 8 C 1.54889 * 110.48517 * 68.24725 * 6 5 3 9 9 C 1.55024 * 102.68499 * 156.51466 * 8 6 5 10 10 C 1.54266 * 104.28177 * 322.23269 * 9 8 6 11 11 F 1.39905 * 110.03199 * 264.23385 * 10 9 8 12 12 F 1.39902 * 110.07778 * 142.82565 * 10 9 8 13 13 C 1.53873 * 106.59746 * 23.51536 * 10 9 8 14 14 C 1.46498 * 120.00047 * 180.02562 * 2 1 3 15 15 H 1.08998 * 110.88788 * 183.88308 * 14 2 1 16 16 C 1.55129 * 110.90449 * 307.97389 * 14 2 1 17 17 N 1.47432 * 104.72268 * 155.27457 * 16 14 2 18 18 C 1.36936 * 125.64895 * 155.81570 * 17 16 14 19 19 H 1.07994 * 119.99672 * 4.87812 * 18 17 16 20 20 C 1.38811 * 119.99637 * 184.59744 * 18 17 16 21 21 N 1.31613 * 120.00320 * 353.26787 * 20 18 17 22 22 Si 1.86804 * 119.99642 * 173.26875 * 20 18 17 23 23 H 1.48498 * 109.46825 * 94.98907 * 22 20 18 24 24 H 1.48493 * 109.47062 * 214.98403 * 22 20 18 25 25 H 1.48499 * 109.47097 * 334.98688 * 22 20 18 26 26 C 1.47026 * 108.70028 * 335.55492 * 17 16 14 27 27 C 1.54325 * 107.26985 * 1.28278 * 26 17 16 28 28 H 1.08992 * 110.72131 * 263.64766 * 27 26 17 29 29 O 1.42909 * 110.71660 * 140.55772 * 27 26 17 30 30 H 1.08998 * 109.46604 * 269.99788 * 1 2 3 31 31 H 1.08994 * 109.46949 * 30.00186 * 1 2 3 32 32 H 1.08998 * 109.46756 * 149.99843 * 1 2 3 33 33 H 1.08998 * 109.47533 * 300.00242 * 5 3 2 34 34 H 1.09000 * 109.47143 * 60.00569 * 5 3 2 35 35 H 1.09001 * 110.75196 * 274.93440 * 8 6 5 36 36 H 1.08997 * 110.76030 * 38.30462 * 8 6 5 37 37 H 1.09006 * 110.52736 * 203.48347 * 9 8 6 38 38 H 1.09005 * 110.48237 * 80.95664 * 9 8 6 39 39 H 1.09003 * 110.03425 * 240.71800 * 13 10 9 40 40 H 1.09001 * 110.03115 * 119.29048 * 13 10 9 41 41 H 1.09002 * 110.49861 * 36.43771 * 16 14 2 42 42 H 1.08994 * 110.34858 * 274.03906 * 16 14 2 43 43 H 0.96996 * 120.00254 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.88034 * 120.70376 * 26 17 16 45 45 H 1.08993 * 109.88043 * 241.86919 * 26 17 16 46 46 H 0.96699 * 114.00312 * 61.45278 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 0.0002 7 1 3.0794 3.5372 0.8302 8 6 3.1417 3.6978 -1.3468 9 6 3.5912 5.1798 -1.4152 10 6 2.4040 5.9653 -0.8206 11 9 1.5731 6.4276 -1.8469 12 9 2.8731 7.0433 -0.0621 13 6 1.6337 4.9832 0.0793 14 6 2.1976 -1.2687 -0.0006 15 1 3.2718 -1.0973 0.0685 16 6 1.7021 -2.1944 1.1414 17 7 2.0265 -3.5584 0.6854 18 6 2.2163 -4.6465 1.4949 19 1 2.0537 -4.5626 2.5592 20 6 2.6118 -5.8588 0.9465 21 7 2.6764 -6.0002 -0.3604 22 14 3.0524 -7.2897 2.0636 23 1 1.8642 -8.1623 2.2423 24 1 4.1549 -8.0741 1.4518 25 1 3.4883 -6.7703 3.3848 26 6 2.1064 -3.5582 -0.7827 27 6 1.8484 -2.1119 -1.2553 28 1 0.8034 -1.9782 -1.5347 29 8 2.7084 -1.7754 -2.3459 30 1 -0.3632 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 0.7590 2.5298 -0.8908 34 1 0.7585 2.5302 0.8892 35 1 4.0036 3.0306 -1.3344 36 1 2.4781 3.4578 -2.1776 37 1 3.7671 5.4786 -2.4486 38 1 4.4889 5.3342 -0.8164 39 1 0.6125 4.8667 -0.2836 40 1 1.6260 5.3460 1.1071 41 1 0.6264 -2.0868 1.2804 42 1 2.2297 -1.9688 2.0681 43 1 2.9524 -6.8474 -0.7436 44 1 3.0981 -3.8805 -1.0999 45 1 1.3484 -4.2238 -1.1952 46 1 2.5831 -2.3270 -3.1303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047401249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:19 Heat of formation + Delta-G solvation = -162.603188 kcal Electronic energy + Delta-G solvation = -29619.609541 eV Core-core repulsion = 25180.445758 eV Total energy + Delta-G solvation = -4439.163783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 6.18 seconds Orbital eigenvalues (eV) -49.14524 -47.21737 -40.16625 -38.33730 -37.20814 -35.22401 -34.78111 -32.14554 -31.30112 -29.11590 -28.52521 -27.41182 -26.78153 -25.69509 -24.21357 -21.51905 -21.09352 -20.47864 -20.12565 -18.87433 -17.89270 -17.32796 -17.11123 -16.96737 -16.60307 -16.07516 -15.72769 -15.48555 -14.82277 -14.55496 -14.42852 -14.24097 -14.00443 -13.65956 -13.61714 -13.52889 -13.12719 -12.98296 -12.78532 -12.50394 -12.39466 -12.30891 -12.10868 -11.99618 -11.78140 -11.64862 -11.38738 -11.25404 -11.12487 -10.96729 -10.91919 -10.84702 -10.79618 -10.19590 -9.99663 -9.88384 -9.62175 -9.28679 -8.72364 -8.37659 -6.96479 -5.82088 -3.16103 2.75704 3.04314 3.35465 3.41603 3.43640 3.49688 3.67939 3.90359 4.08049 4.41090 4.51206 4.66340 4.69321 4.73831 4.87575 5.00280 5.04232 5.11670 5.20234 5.21608 5.30996 5.34428 5.36027 5.45277 5.50218 5.56432 5.58051 5.63966 5.73599 5.75932 5.86703 5.99256 6.02586 6.07629 6.08453 6.44564 6.57279 6.84450 7.28444 7.44354 7.56084 7.68944 8.12188 8.16261 8.33010 9.09389 9.70042 10.33211 11.29745 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.030032 B = 0.002335 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.128023 B =11990.172257 C =12149.449969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.514 3.486 4 O -0.535 6.535 5 C -0.132 4.132 6 C -0.073 4.073 7 H 0.095 0.905 8 C -0.116 4.116 9 C -0.162 4.162 10 C 0.280 3.720 11 F -0.200 7.200 12 F -0.202 7.202 13 C -0.161 4.161 14 C 0.134 3.866 15 H 0.115 0.885 16 C 0.132 3.868 17 N -0.599 5.599 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.151 3.849 27 C 0.064 3.936 28 H 0.055 0.945 29 O -0.561 6.561 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.025 0.975 42 H 0.048 0.952 43 H 0.254 0.746 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 20.810 -2.571 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.335 5.335 3 C 0.302 3.698 4 O -0.411 6.411 5 C -0.172 4.172 6 C -0.092 4.092 7 H 0.113 0.887 8 C -0.153 4.153 9 C -0.200 4.200 10 C 0.244 3.756 11 F -0.181 7.181 12 F -0.183 7.183 13 C -0.199 4.199 14 C 0.030 3.970 15 H 0.133 0.867 16 C 0.005 3.995 17 N -0.327 5.327 18 C -0.360 4.360 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.026 3.974 27 C 0.004 3.996 28 H 0.072 0.928 29 O -0.366 6.366 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.773 21.077 -2.174 21.719 hybrid contribution -0.317 -1.129 0.065 1.175 sum -5.089 19.947 -2.110 20.694 Atomic orbital electron populations 1.21803 0.79987 1.03104 1.01995 1.47777 1.06747 1.06048 1.72933 1.20487 0.88111 0.85073 0.76143 1.90686 1.13866 1.87173 1.49424 1.21758 0.98885 0.92108 1.04457 1.21707 0.96496 0.91070 0.99952 0.88704 1.22616 1.01847 0.94205 0.96632 1.23411 0.96838 0.96489 1.03229 1.21890 0.89558 0.82558 0.81641 1.93010 1.73806 1.90457 1.60874 1.93008 1.89304 1.59428 1.76579 1.23251 1.00702 0.94952 1.00954 1.22434 0.98507 0.81301 0.94734 0.86715 1.21814 0.97277 0.85526 0.94892 1.44239 1.83417 1.03225 1.01819 1.19053 1.39590 0.87295 0.90086 0.90135 1.24840 1.01275 0.97983 0.96054 1.69936 1.53079 1.24812 1.08900 0.86085 0.77933 0.82082 0.79575 1.21599 1.21519 1.20501 1.21867 1.01890 0.89215 0.84448 1.23566 0.91980 0.97367 0.86680 0.92762 1.86496 1.63405 1.61268 1.25407 0.92282 0.91296 0.90622 0.88670 0.88619 0.88411 0.90843 0.89053 0.88379 0.88580 0.88601 0.95718 0.93353 0.93584 0.92047 0.93649 0.77979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 8.84 59.85 0.53 1.30 16 2 N -0.60 -8.66 2.91 -171.35 -0.50 -9.16 16 3 C 0.51 7.19 7.47 -10.99 -0.08 7.11 16 4 O -0.53 -9.50 13.99 5.56 0.08 -9.42 16 5 C -0.13 -1.18 3.61 -27.88 -0.10 -1.28 16 6 C -0.07 -0.66 2.45 -88.96 -0.22 -0.88 16 7 H 0.09 0.95 7.96 -51.93 -0.41 0.54 16 8 C -0.12 -1.11 5.70 -24.67 -0.14 -1.25 16 9 C -0.16 -1.38 6.40 -25.00 -0.16 -1.54 16 10 C 0.28 2.59 2.57 -25.61 -0.07 2.52 16 11 F -0.20 -2.12 17.04 2.25 0.04 -2.08 16 12 F -0.20 -2.16 17.04 2.25 0.04 -2.12 16 13 C -0.16 -1.21 6.07 -25.61 -0.16 -1.37 16 14 C 0.13 2.49 3.19 -65.66 -0.21 2.28 16 15 H 0.11 2.50 7.02 -51.93 -0.36 2.13 16 16 C 0.13 2.66 6.79 -2.41 -0.02 2.65 16 17 N -0.60 -14.93 3.39 -169.93 -0.58 -15.50 16 18 C -0.23 -6.34 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 20 C 0.00 -0.14 5.48 -17.43 -0.10 -0.23 16 21 N -0.92 -26.38 10.36 55.49 0.57 -25.80 16 22 Si 0.91 21.70 29.56 -169.99 -5.02 16.68 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.15 3.55 5.15 -3.06 -0.02 3.54 16 27 C 0.06 1.20 3.88 -24.90 -0.10 1.11 16 28 H 0.05 0.91 6.41 -51.93 -0.33 0.58 16 29 O -0.56 -10.22 13.39 -35.23 -0.47 -10.69 16 30 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.07 0.51 6.44 -51.93 -0.33 0.17 16 32 H 0.08 0.84 6.42 -51.93 -0.33 0.51 16 33 H 0.10 0.70 7.32 -51.93 -0.38 0.32 16 34 H 0.10 0.66 8.11 -51.93 -0.42 0.24 16 35 H 0.10 1.15 7.16 -51.93 -0.37 0.78 16 36 H 0.07 0.68 8.00 -51.93 -0.42 0.27 16 37 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 39 H 0.10 0.61 7.71 -51.93 -0.40 0.21 16 40 H 0.10 0.64 8.02 -51.93 -0.42 0.23 16 41 H 0.03 0.47 7.00 -51.93 -0.36 0.10 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.06 1.64 7.22 -51.93 -0.37 1.27 16 45 H 0.05 1.15 7.60 -51.93 -0.39 0.75 16 46 H 0.37 5.29 9.11 45.56 0.42 5.71 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -33.14 367.01 -7.43 -40.57 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.13 Total: 4.52 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -0.98 Total: 7.46 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.50 Total: -50.46 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.39 Total: -20.11 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.08 Total: -4.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.14 -7.43 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047401249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.036 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.19 seconds