Wall clock time and date at job start Tue Mar 31 2020 16:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34780 * 119.99770 * 2 1 4 4 O 1.21280 * 119.99419 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.99892 * 359.97438 * 3 2 1 6 6 C 1.53003 * 109.46677 * 179.97438 * 5 3 2 7 7 H 1.08999 * 110.43979 * 305.69982 * 6 5 3 8 8 C 1.54889 * 110.48517 * 68.24725 * 6 5 3 9 9 C 1.55024 * 102.68499 * 156.51466 * 8 6 5 10 10 C 1.54266 * 104.28177 * 322.23269 * 9 8 6 11 11 F 1.39905 * 110.03199 * 264.23385 * 10 9 8 12 12 F 1.39902 * 110.07778 * 142.82565 * 10 9 8 13 13 C 1.53873 * 106.59746 * 23.51536 * 10 9 8 14 14 C 1.46498 * 120.00047 * 180.02562 * 2 1 3 15 15 H 1.08998 * 110.88788 * 183.88308 * 14 2 1 16 16 C 1.55129 * 110.90449 * 307.97389 * 14 2 1 17 17 N 1.47432 * 104.72268 * 155.27457 * 16 14 2 18 18 C 1.36936 * 125.64895 * 155.81570 * 17 16 14 19 19 H 1.07994 * 119.99672 * 4.87812 * 18 17 16 20 20 C 1.38811 * 119.99637 * 184.59744 * 18 17 16 21 21 N 1.31613 * 120.00320 * 353.26787 * 20 18 17 22 22 Si 1.86804 * 119.99642 * 173.26875 * 20 18 17 23 23 H 1.48498 * 109.46825 * 94.98907 * 22 20 18 24 24 H 1.48493 * 109.47062 * 214.98403 * 22 20 18 25 25 H 1.48499 * 109.47097 * 334.98688 * 22 20 18 26 26 C 1.47026 * 108.70028 * 335.55492 * 17 16 14 27 27 C 1.54325 * 107.26985 * 1.28278 * 26 17 16 28 28 H 1.08992 * 110.72131 * 263.64766 * 27 26 17 29 29 O 1.42909 * 110.71660 * 140.55772 * 27 26 17 30 30 H 1.08998 * 109.46604 * 269.99788 * 1 2 3 31 31 H 1.08994 * 109.46949 * 30.00186 * 1 2 3 32 32 H 1.08998 * 109.46756 * 149.99843 * 1 2 3 33 33 H 1.08998 * 109.47533 * 300.00242 * 5 3 2 34 34 H 1.09000 * 109.47143 * 60.00569 * 5 3 2 35 35 H 1.09001 * 110.75196 * 274.93440 * 8 6 5 36 36 H 1.08997 * 110.76030 * 38.30462 * 8 6 5 37 37 H 1.09006 * 110.52736 * 203.48347 * 9 8 6 38 38 H 1.09005 * 110.48237 * 80.95664 * 9 8 6 39 39 H 1.09003 * 110.03425 * 240.71800 * 13 10 9 40 40 H 1.09001 * 110.03115 * 119.29048 * 13 10 9 41 41 H 1.09002 * 110.49861 * 36.43771 * 16 14 2 42 42 H 1.08994 * 110.34858 * 274.03906 * 16 14 2 43 43 H 0.96996 * 120.00254 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.88034 * 120.70376 * 26 17 16 45 45 H 1.08993 * 109.88043 * 241.86919 * 26 17 16 46 46 H 0.96699 * 114.00312 * 61.45278 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 0.0002 7 1 3.0794 3.5372 0.8302 8 6 3.1417 3.6978 -1.3468 9 6 3.5912 5.1798 -1.4152 10 6 2.4040 5.9653 -0.8206 11 9 1.5731 6.4276 -1.8469 12 9 2.8731 7.0433 -0.0621 13 6 1.6337 4.9832 0.0793 14 6 2.1976 -1.2687 -0.0006 15 1 3.2718 -1.0973 0.0685 16 6 1.7021 -2.1944 1.1414 17 7 2.0265 -3.5584 0.6854 18 6 2.2163 -4.6465 1.4949 19 1 2.0537 -4.5626 2.5592 20 6 2.6118 -5.8588 0.9465 21 7 2.6764 -6.0002 -0.3604 22 14 3.0524 -7.2897 2.0636 23 1 1.8642 -8.1623 2.2423 24 1 4.1549 -8.0741 1.4518 25 1 3.4883 -6.7703 3.3848 26 6 2.1064 -3.5582 -0.7827 27 6 1.8484 -2.1119 -1.2553 28 1 0.8034 -1.9782 -1.5347 29 8 2.7084 -1.7754 -2.3459 30 1 -0.3632 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 0.7590 2.5298 -0.8908 34 1 0.7585 2.5302 0.8892 35 1 4.0036 3.0306 -1.3344 36 1 2.4781 3.4578 -2.1776 37 1 3.7671 5.4786 -2.4486 38 1 4.4889 5.3342 -0.8164 39 1 0.6125 4.8667 -0.2836 40 1 1.6260 5.3460 1.1071 41 1 0.6264 -2.0868 1.2804 42 1 2.2297 -1.9688 2.0681 43 1 2.9524 -6.8474 -0.7436 44 1 3.0981 -3.8805 -1.0999 45 1 1.3484 -4.2238 -1.1952 46 1 2.5831 -2.3270 -3.1303 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047401249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:15 Heat of formation + Delta-G solvation = -185.680161 kcal Electronic energy + Delta-G solvation = -29620.610234 eV Core-core repulsion = 25180.445758 eV Total energy + Delta-G solvation = -4440.164476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -49.89598 -47.98013 -41.30834 -39.66082 -38.17274 -36.70778 -36.23297 -33.89573 -32.28183 -30.38755 -29.62495 -28.96219 -27.76169 -26.87044 -25.82142 -22.49272 -22.28918 -21.97112 -21.13072 -20.01406 -19.00388 -18.71454 -18.50437 -17.76120 -17.69867 -17.35967 -16.83014 -16.50087 -16.39676 -15.80588 -15.63184 -15.25553 -15.11502 -14.75942 -14.53824 -14.47335 -14.35954 -14.29533 -14.09508 -13.87866 -13.59189 -13.26651 -13.17009 -13.10010 -12.91389 -12.88067 -12.74450 -12.60698 -12.48679 -12.29890 -12.09581 -11.89545 -11.82352 -11.68277 -11.56425 -11.54425 -10.97466 -10.76116 -10.65094 -9.60502 -8.96364 -7.90755 -5.26909 1.45015 1.47600 1.56537 1.71344 1.95231 2.47214 2.80501 2.99121 3.14432 3.20798 3.31334 3.42170 3.59597 3.69537 3.86803 3.97619 4.04081 4.08070 4.11812 4.25227 4.33302 4.34949 4.38935 4.46245 4.48871 4.56052 4.67998 4.76124 4.77309 4.81789 4.85662 4.93174 5.00674 5.08441 5.10535 5.24398 5.34021 5.36563 5.44501 5.56027 5.64280 6.11925 6.50256 6.83118 7.02618 7.26859 7.68443 8.31341 9.19550 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.030032 B = 0.002335 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.128023 B =11990.172257 C =12149.449969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.506 3.494 4 O -0.582 6.582 5 C -0.121 4.121 6 C -0.072 4.072 7 H 0.079 0.921 8 C -0.115 4.115 9 C -0.160 4.160 10 C 0.274 3.726 11 F -0.207 7.207 12 F -0.212 7.212 13 C -0.149 4.149 14 C 0.147 3.853 15 H 0.075 0.925 16 C 0.134 3.866 17 N -0.622 5.622 18 C -0.246 4.246 19 H 0.086 0.914 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.162 3.838 27 C 0.083 3.917 28 H 0.086 0.914 29 O -0.572 6.572 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.249 0.751 44 H 0.018 0.982 45 H 0.021 0.979 46 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 22.596 -1.961 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.335 5.335 3 C 0.296 3.704 4 O -0.462 6.462 5 C -0.160 4.160 6 C -0.091 4.091 7 H 0.097 0.903 8 C -0.153 4.153 9 C -0.198 4.198 10 C 0.238 3.762 11 F -0.188 7.188 12 F -0.193 7.193 13 C -0.187 4.187 14 C 0.041 3.959 15 H 0.093 0.907 16 C 0.008 3.992 17 N -0.350 5.350 18 C -0.374 4.374 19 H 0.104 0.896 20 C -0.256 4.256 21 N -0.597 5.597 22 Si 0.807 3.193 23 H -0.209 1.209 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.036 3.964 27 C 0.023 3.977 28 H 0.103 0.897 29 O -0.379 6.379 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.232 22.902 -1.558 24.068 hybrid contribution 0.469 -1.639 -0.141 1.711 sum -6.763 21.263 -1.699 22.377 Atomic orbital electron populations 1.22151 0.76977 1.04819 1.03683 1.47841 1.08409 1.04398 1.72869 1.21479 0.87888 0.86343 0.74671 1.90681 1.16311 1.87852 1.51335 1.21821 0.98585 0.88332 1.07258 1.21647 0.96489 0.92180 0.98763 0.90284 1.22542 1.01093 0.94125 0.97536 1.23387 0.96885 0.95819 1.03662 1.22103 0.89827 0.82490 0.81801 1.92997 1.73956 1.90599 1.61290 1.92990 1.89492 1.60029 1.76784 1.23191 1.01101 0.93047 1.01332 1.21860 0.96935 0.83279 0.93812 0.90694 1.21932 0.98510 0.83608 0.95123 1.44516 1.83470 1.04627 1.02386 1.19447 1.38947 0.88246 0.90790 0.89579 1.25683 1.01819 1.00664 0.97436 1.70143 1.54127 1.24994 1.10422 0.85065 0.77354 0.78858 0.78069 1.20919 1.22201 1.19393 1.21609 0.98610 0.92074 0.84103 1.23350 0.93489 0.93939 0.86941 0.89683 1.86466 1.63749 1.61613 1.26036 0.90608 0.87314 0.91229 0.85854 0.85381 0.91267 0.90242 0.88526 0.88346 0.86414 0.87407 0.92968 0.94042 0.94215 0.96407 0.96077 0.75992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 8.84 127.77 1.13 2.19 16 2 N -0.60 -15.95 2.91 -814.40 -2.37 -18.32 16 3 C 0.51 13.21 7.47 87.65 0.66 13.86 16 4 O -0.58 -20.89 13.99 -3.03 -0.04 -20.93 16 5 C -0.12 -1.68 3.61 29.85 0.11 -1.57 16 6 C -0.07 -1.12 2.45 -9.72 -0.02 -1.14 16 7 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 8 C -0.12 -2.10 5.70 31.93 0.18 -1.92 16 9 C -0.16 -2.56 6.40 31.72 0.20 -2.36 16 10 C 0.27 4.49 2.57 31.32 0.08 4.57 16 11 F -0.21 -3.89 17.04 44.97 0.77 -3.13 16 12 F -0.21 -4.18 17.04 44.97 0.77 -3.41 16 13 C -0.15 -1.73 6.07 31.32 0.19 -1.54 16 14 C 0.15 5.41 3.19 46.46 0.15 5.56 16 15 H 0.07 3.39 7.02 -2.39 -0.02 3.37 16 16 C 0.13 5.36 6.79 86.93 0.59 5.95 16 17 N -0.62 -31.55 3.39 -691.55 -2.35 -33.90 16 18 C -0.25 -13.59 10.27 84.03 0.86 -12.73 16 19 H 0.09 4.53 7.84 -2.91 -0.02 4.50 16 20 C -0.06 -3.53 5.48 84.86 0.46 -3.06 16 21 N -0.95 -56.23 10.36 21.65 0.22 -56.00 16 22 Si 0.98 45.25 29.56 68.60 2.03 47.28 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.16 7.86 5.15 86.73 0.45 8.30 16 27 C 0.08 3.09 3.88 31.78 0.12 3.21 16 28 H 0.09 2.67 6.41 -2.39 -0.02 2.65 16 29 O -0.57 -20.77 13.39 -148.98 -2.00 -22.76 16 30 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 31 H 0.11 0.94 6.44 -2.39 -0.02 0.92 16 32 H 0.07 1.26 6.42 -2.39 -0.02 1.24 16 33 H 0.12 1.11 7.32 -2.39 -0.02 1.09 16 34 H 0.13 1.05 8.11 -2.39 -0.02 1.03 16 35 H 0.07 1.68 7.16 -2.39 -0.02 1.66 16 36 H 0.08 1.33 8.00 -2.39 -0.02 1.31 16 37 H 0.10 1.42 8.11 -2.38 -0.02 1.40 16 38 H 0.10 1.55 8.12 -2.38 -0.02 1.53 16 39 H 0.12 0.91 7.71 -2.39 -0.02 0.89 16 40 H 0.11 1.05 8.02 -2.39 -0.02 1.03 16 41 H 0.05 1.83 7.00 -2.39 -0.02 1.81 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 44 H 0.02 1.00 7.22 -2.39 -0.02 0.99 16 45 H 0.02 1.11 7.60 -2.39 -0.02 1.09 16 46 H 0.39 10.98 9.11 -74.06 -0.67 10.30 16 Total: -1.00 -76.09 367.01 2.52 -73.57 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.33 Total: 18.29 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 5.16 Total: 19.31 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -4.49 Total: -108.23 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -2.04 Total: -43.69 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 1.53 Total: -6.54 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.09 2.52 -73.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047401249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.107 kcal (2) G-P(sol) polarization free energy of solvation -76.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds