Wall clock time and date at job start Tue Mar 31 2020 16:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99635 * 2 1 4 4 O 1.21283 * 119.99649 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99988 * 0.02562 * 3 2 1 6 6 H 1.09002 * 109.47054 * 60.00213 * 5 3 2 7 7 C 1.53001 * 109.47168 * 179.97438 * 5 3 2 8 8 C 1.53000 * 109.47355 * 179.97438 * 7 5 3 9 9 C 1.52995 * 109.47137 * 300.00155 * 8 7 5 10 10 C 1.53003 * 109.47306 * 60.00045 * 9 8 7 11 11 F 1.39897 * 109.47223 * 59.99714 * 10 9 8 12 12 F 1.39900 * 109.47477 * 179.97438 * 10 9 8 13 13 C 1.53000 * 109.47355 * 300.00132 * 5 3 2 14 14 C 1.46493 * 120.00444 * 180.27289 * 2 1 3 15 15 H 1.09000 * 110.64325 * 182.86423 * 14 2 1 16 16 C 1.54327 * 110.72222 * 306.20500 * 14 2 1 17 17 N 1.47020 * 107.27234 * 140.55384 * 16 14 2 18 18 C 1.36936 * 125.64672 * 181.01712 * 17 16 14 19 19 H 1.07993 * 120.00417 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99887 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99626 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47043 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46899 * 119.99914 * 22 20 18 25 25 H 1.48500 * 109.47209 * 240.00143 * 22 20 18 26 26 C 1.47429 * 108.70409 * 1.05699 * 17 16 14 27 27 C 1.54910 * 104.83187 * 335.87377 * 26 17 16 28 28 H 1.09000 * 111.00206 * 278.93049 * 27 26 17 29 29 O 1.42897 * 111.03402 * 155.09415 * 27 26 17 30 30 H 1.08995 * 109.47693 * 90.00207 * 1 2 3 31 31 H 1.09003 * 109.47006 * 210.00121 * 1 2 3 32 32 H 1.09004 * 109.47665 * 329.99813 * 1 2 3 33 33 H 1.09000 * 109.47339 * 299.99895 * 7 5 3 34 34 H 1.09002 * 109.46926 * 60.00175 * 7 5 3 35 35 H 1.09002 * 109.46807 * 60.00291 * 8 7 5 36 36 H 1.08995 * 109.47242 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.46935 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.47384 * 299.99783 * 9 8 7 39 39 H 1.09007 * 109.46721 * 300.00289 * 13 5 3 40 40 H 1.08995 * 109.47131 * 59.99934 * 13 5 3 41 41 H 1.08995 * 109.88005 * 259.97190 * 16 14 2 42 42 H 1.08997 * 109.88034 * 21.13657 * 16 14 2 43 43 H 0.97008 * 119.99407 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.36986 * 217.03158 * 26 17 16 45 45 H 1.09004 * 110.45434 * 94.76094 * 26 17 16 46 46 H 0.96701 * 114.00014 * 67.78796 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 0.0006 6 1 0.7589 2.5298 0.8909 7 6 2.3794 3.6353 0.0011 8 6 1.6143 4.9603 0.0011 9 6 0.7351 5.0415 -1.2484 10 6 -0.2591 3.8786 -1.2489 11 9 -1.0637 3.9524 -0.1069 12 9 -1.0635 3.9531 -2.3911 13 6 0.5051 2.5536 -1.2483 14 6 2.1975 -1.2686 -0.0060 15 1 3.2719 -1.0922 0.0458 16 6 1.7322 -2.1734 1.1544 17 7 1.6806 -3.5500 0.6409 18 6 1.2947 -4.6537 1.3536 19 1 0.9935 -4.5519 2.3857 20 6 1.2906 -5.9036 0.7495 21 7 1.6573 -6.0276 -0.5084 22 14 0.7648 -7.4093 1.7221 23 1 0.4021 -7.0042 3.1039 24 1 -0.4105 -8.0366 1.0660 25 1 1.8843 -8.3839 1.7692 26 6 2.1141 -3.5455 -0.7682 27 6 1.8384 -2.1038 -1.2634 28 1 0.7893 -1.9765 -1.5306 29 8 2.6883 -1.7674 -2.3617 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 3.0061 3.5773 0.8911 34 1 3.0060 3.5780 -0.8889 35 1 0.9874 5.0179 0.8909 36 1 2.3226 5.7888 0.0010 37 1 0.1898 5.9853 -1.2482 38 1 1.3621 4.9840 -2.1382 39 1 1.1315 2.4961 -2.1385 40 1 -0.2032 1.7251 -1.2482 41 1 2.4416 -2.1119 1.9796 42 1 0.7420 -1.8656 1.4902 43 1 1.6548 -6.9010 -0.9305 44 1 1.5321 -4.2631 -1.3465 45 1 3.1773 -3.7747 -0.8404 46 1 2.5015 -2.2640 -3.1701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047524941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:25 Heat of formation + Delta-G solvation = -156.490337 kcal Electronic energy + Delta-G solvation = -30577.218352 eV Core-core repulsion = 26138.319641 eV Total energy + Delta-G solvation = -4438.898710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.23049 -47.20844 -40.44570 -38.27371 -37.00015 -35.31974 -34.85333 -32.34074 -31.37206 -30.20027 -28.61434 -27.31039 -26.83617 -24.83489 -23.76478 -23.03739 -20.97148 -20.50826 -20.01994 -18.97812 -17.70256 -17.23832 -17.17962 -16.99275 -16.65220 -16.34098 -15.69130 -15.43134 -14.89839 -14.71783 -14.40230 -14.04909 -13.91305 -13.75989 -13.54005 -13.47903 -13.18070 -13.08525 -13.02583 -12.71486 -12.52287 -12.29573 -12.14910 -11.95804 -11.68850 -11.60588 -11.50417 -11.25110 -11.15264 -11.03007 -10.98052 -10.88219 -10.68023 -10.18716 -9.97796 -9.75767 -9.67327 -9.25566 -8.76819 -8.40002 -6.97515 -5.76431 -3.20032 2.63496 3.02195 3.34027 3.39911 3.42260 3.47420 3.73014 3.98912 4.03223 4.37480 4.50429 4.54448 4.60909 4.66191 4.78628 4.87115 4.99398 5.01589 5.20327 5.26189 5.32654 5.37880 5.45388 5.46407 5.50744 5.53181 5.59245 5.64168 5.65327 5.79721 5.86656 5.89209 6.03347 6.06478 6.14095 6.41498 6.57071 6.85749 7.30251 7.46769 7.53587 7.68628 8.12176 8.22433 8.27265 9.08605 9.69182 10.31320 11.27194 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002890 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.843895 B = 9685.870627 C = 9853.888348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.598 5.598 3 C 0.521 3.479 4 O -0.533 6.533 5 C -0.102 4.102 6 H 0.105 0.895 7 C -0.105 4.105 8 C -0.118 4.118 9 C -0.159 4.159 10 C 0.292 3.708 11 F -0.199 7.199 12 F -0.201 7.201 13 C -0.164 4.164 14 C 0.135 3.865 15 H 0.112 0.888 16 C 0.130 3.870 17 N -0.599 5.599 18 C -0.225 4.225 19 H 0.081 0.919 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.918 3.082 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.129 3.871 27 C 0.065 3.935 28 H 0.059 0.941 29 O -0.563 6.563 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.253 0.747 44 H 0.111 0.889 45 H 0.025 0.975 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 21.199 -2.579 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.330 5.330 3 C 0.308 3.692 4 O -0.410 6.410 5 C -0.124 4.124 6 H 0.123 0.877 7 C -0.142 4.142 8 C -0.156 4.156 9 C -0.197 4.197 10 C 0.256 3.744 11 F -0.180 7.180 12 F -0.182 7.182 13 C -0.202 4.202 14 C 0.032 3.968 15 H 0.130 0.870 16 C 0.003 3.997 17 N -0.326 5.326 18 C -0.353 4.353 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.003 3.997 27 C 0.004 3.996 28 H 0.077 0.923 29 O -0.368 6.368 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.129 0.871 45 H 0.043 0.957 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.345 21.385 -2.147 21.751 hybrid contribution -0.825 -1.277 0.021 1.521 sum -4.171 20.108 -2.125 20.645 Atomic orbital electron populations 1.22036 0.80018 1.03912 1.01811 1.47779 1.06758 1.05920 1.72562 1.20297 0.87877 0.84780 0.76204 1.90699 1.13726 1.87089 1.49458 1.21254 0.97819 0.94065 0.99245 0.87660 1.21446 0.96879 0.91363 1.04547 1.21544 0.98669 0.98427 0.96960 1.22561 0.97939 0.97328 1.01907 1.21016 0.83563 0.98398 0.71394 1.92996 1.76108 1.97491 1.51370 1.93018 1.76233 1.97469 1.51448 1.22785 1.00392 0.96558 1.00494 1.22168 0.98151 0.81523 0.94955 0.87008 1.21557 0.98315 0.85922 0.93930 1.44279 1.78211 1.01254 1.08902 1.19132 1.37111 0.84477 0.94585 0.90122 1.24817 1.01488 0.97644 0.96545 1.69768 1.53827 1.22526 1.10879 0.85954 0.77814 0.82624 0.78818 1.20434 1.21657 1.21638 1.22554 0.99223 0.91511 0.86427 1.23719 0.92370 0.97523 0.85971 0.92348 1.86445 1.60944 1.66667 1.22712 0.92354 0.89544 0.90907 0.90077 0.90489 0.90774 0.90031 0.89446 0.88608 0.88097 0.87788 0.95014 0.94785 0.93608 0.87098 0.95728 0.77936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 7.65 59.84 0.46 1.24 16 2 N -0.60 -9.10 2.89 -171.84 -0.50 -9.59 16 3 C 0.52 7.78 7.08 -10.98 -0.08 7.70 16 4 O -0.53 -9.95 15.35 5.56 0.09 -9.87 16 5 C -0.10 -1.08 1.60 -91.77 -0.15 -1.22 16 6 H 0.11 1.00 7.06 -51.93 -0.37 0.63 16 7 C -0.10 -0.98 4.49 -26.73 -0.12 -1.10 16 8 C -0.12 -0.82 5.80 -26.73 -0.16 -0.97 16 9 C -0.16 -1.12 5.45 -26.73 -0.15 -1.27 16 10 C 0.29 2.68 2.10 -26.75 -0.06 2.62 16 11 F -0.20 -2.03 16.02 2.25 0.04 -1.99 16 12 F -0.20 -2.14 17.06 2.25 0.04 -2.10 16 13 C -0.16 -1.57 4.37 -26.76 -0.12 -1.68 16 14 C 0.14 2.56 3.10 -66.09 -0.20 2.35 16 15 H 0.11 2.39 7.00 -51.93 -0.36 2.03 16 16 C 0.13 2.67 6.81 -3.06 -0.02 2.65 16 17 N -0.60 -14.89 3.39 -170.07 -0.58 -15.46 16 18 C -0.23 -6.07 10.27 -15.06 -0.15 -6.23 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -25.99 10.09 55.49 0.56 -25.43 16 22 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.13 3.05 5.62 -2.53 -0.01 3.04 16 27 C 0.07 1.25 4.00 -24.58 -0.10 1.15 16 28 H 0.06 1.06 7.27 -51.93 -0.38 0.69 16 29 O -0.56 -10.28 13.47 -35.23 -0.47 -10.75 16 30 H 0.06 0.64 6.88 -51.93 -0.36 0.28 16 31 H 0.09 1.13 6.10 -51.93 -0.32 0.81 16 32 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 33 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 0.78 8.10 -51.93 -0.42 0.35 16 35 H 0.07 0.51 7.80 -51.93 -0.41 0.11 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 40 H 0.10 0.99 4.53 -51.93 -0.24 0.75 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.66 5.95 -51.93 -0.31 0.35 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.11 2.89 5.87 -51.93 -0.31 2.58 16 45 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.37 5.27 9.12 45.56 0.42 5.68 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -32.31 357.77 -7.27 -39.58 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.86 Total: 5.85 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.95 Total: 7.93 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.51 Total: -50.49 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.39 Total: -20.62 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.09 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.31 -7.27 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047524941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.914 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds