Wall clock time and date at job start Tue Mar 31 2020 16:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99635 * 2 1 4 4 O 1.21283 * 119.99649 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99988 * 0.02562 * 3 2 1 6 6 H 1.09002 * 109.47054 * 60.00213 * 5 3 2 7 7 C 1.53001 * 109.47168 * 179.97438 * 5 3 2 8 8 C 1.53000 * 109.47355 * 179.97438 * 7 5 3 9 9 C 1.52995 * 109.47137 * 300.00155 * 8 7 5 10 10 C 1.53003 * 109.47306 * 60.00045 * 9 8 7 11 11 F 1.39897 * 109.47223 * 59.99714 * 10 9 8 12 12 F 1.39900 * 109.47477 * 179.97438 * 10 9 8 13 13 C 1.53000 * 109.47355 * 300.00132 * 5 3 2 14 14 C 1.46493 * 120.00444 * 180.27289 * 2 1 3 15 15 H 1.09000 * 110.64325 * 182.86423 * 14 2 1 16 16 C 1.54327 * 110.72222 * 306.20500 * 14 2 1 17 17 N 1.47020 * 107.27234 * 140.55384 * 16 14 2 18 18 C 1.36936 * 125.64672 * 181.01712 * 17 16 14 19 19 H 1.07993 * 120.00417 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99887 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99626 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47043 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46899 * 119.99914 * 22 20 18 25 25 H 1.48500 * 109.47209 * 240.00143 * 22 20 18 26 26 C 1.47429 * 108.70409 * 1.05699 * 17 16 14 27 27 C 1.54910 * 104.83187 * 335.87377 * 26 17 16 28 28 H 1.09000 * 111.00206 * 278.93049 * 27 26 17 29 29 O 1.42897 * 111.03402 * 155.09415 * 27 26 17 30 30 H 1.08995 * 109.47693 * 90.00207 * 1 2 3 31 31 H 1.09003 * 109.47006 * 210.00121 * 1 2 3 32 32 H 1.09004 * 109.47665 * 329.99813 * 1 2 3 33 33 H 1.09000 * 109.47339 * 299.99895 * 7 5 3 34 34 H 1.09002 * 109.46926 * 60.00175 * 7 5 3 35 35 H 1.09002 * 109.46807 * 60.00291 * 8 7 5 36 36 H 1.08995 * 109.47242 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.46935 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.47384 * 299.99783 * 9 8 7 39 39 H 1.09007 * 109.46721 * 300.00289 * 13 5 3 40 40 H 1.08995 * 109.47131 * 59.99934 * 13 5 3 41 41 H 1.08995 * 109.88005 * 259.97190 * 16 14 2 42 42 H 1.08997 * 109.88034 * 21.13657 * 16 14 2 43 43 H 0.97008 * 119.99407 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.36986 * 217.03158 * 26 17 16 45 45 H 1.09004 * 110.45434 * 94.76094 * 26 17 16 46 46 H 0.96701 * 114.00014 * 67.78796 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 0.0006 6 1 0.7589 2.5298 0.8909 7 6 2.3794 3.6353 0.0011 8 6 1.6143 4.9603 0.0011 9 6 0.7351 5.0415 -1.2484 10 6 -0.2591 3.8786 -1.2489 11 9 -1.0637 3.9524 -0.1069 12 9 -1.0635 3.9531 -2.3911 13 6 0.5051 2.5536 -1.2483 14 6 2.1975 -1.2686 -0.0060 15 1 3.2719 -1.0922 0.0458 16 6 1.7322 -2.1734 1.1544 17 7 1.6806 -3.5500 0.6409 18 6 1.2947 -4.6537 1.3536 19 1 0.9935 -4.5519 2.3857 20 6 1.2906 -5.9036 0.7495 21 7 1.6573 -6.0276 -0.5084 22 14 0.7648 -7.4093 1.7221 23 1 0.4021 -7.0042 3.1039 24 1 -0.4105 -8.0366 1.0660 25 1 1.8843 -8.3839 1.7692 26 6 2.1141 -3.5455 -0.7682 27 6 1.8384 -2.1038 -1.2634 28 1 0.7893 -1.9765 -1.5306 29 8 2.6883 -1.7674 -2.3617 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 3.0061 3.5773 0.8911 34 1 3.0060 3.5780 -0.8889 35 1 0.9874 5.0179 0.8909 36 1 2.3226 5.7888 0.0010 37 1 0.1898 5.9853 -1.2482 38 1 1.3621 4.9840 -2.1382 39 1 1.1315 2.4961 -2.1385 40 1 -0.2032 1.7251 -1.2482 41 1 2.4416 -2.1119 1.9796 42 1 0.7420 -1.8656 1.4902 43 1 1.6548 -6.9010 -0.9305 44 1 1.5321 -4.2631 -1.3465 45 1 3.1773 -3.7747 -0.8404 46 1 2.5015 -2.2640 -3.1701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047524941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:22 Heat of formation + Delta-G solvation = -178.685953 kcal Electronic energy + Delta-G solvation = -30578.180826 eV Core-core repulsion = 26138.319641 eV Total energy + Delta-G solvation = -4439.861184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -49.96503 -47.95308 -41.64199 -39.71593 -37.96376 -36.77754 -36.42977 -33.98388 -32.46512 -30.91641 -30.31361 -28.95025 -28.01681 -26.49511 -24.86080 -23.76758 -22.36984 -22.03460 -21.01665 -20.21858 -19.06767 -18.81339 -18.27643 -17.89526 -17.66597 -17.35907 -17.14539 -16.60207 -16.25547 -15.79711 -15.64752 -15.42222 -15.08328 -14.92929 -14.64801 -14.51111 -14.29387 -14.22123 -14.01507 -13.86387 -13.67494 -13.60256 -13.24573 -13.20725 -13.08157 -12.86911 -12.78555 -12.75497 -12.62421 -12.30612 -12.00979 -11.93302 -11.83186 -11.73512 -11.53420 -11.37012 -11.08416 -10.79371 -10.65800 -9.71782 -8.98389 -7.82155 -5.29259 1.47331 1.47951 1.49235 1.58981 1.81483 2.46631 2.74692 3.02368 3.08662 3.26940 3.29669 3.34075 3.62027 3.68581 3.77592 3.81492 3.92454 4.03679 4.04806 4.15298 4.17988 4.23488 4.33638 4.39755 4.42386 4.51817 4.53962 4.66482 4.76030 4.81351 4.89940 4.92324 4.95017 4.97110 5.12987 5.18616 5.34652 5.36691 5.43935 5.46652 5.66266 6.18909 6.33312 6.82208 7.02924 7.07289 7.67815 8.30216 9.19546 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.002890 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.843895 B = 9685.870627 C = 9853.888348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.598 5.598 3 C 0.517 3.483 4 O -0.576 6.576 5 C -0.091 4.091 6 H 0.122 0.878 7 C -0.104 4.104 8 C -0.110 4.110 9 C -0.157 4.157 10 C 0.292 3.708 11 F -0.204 7.204 12 F -0.210 7.210 13 C -0.162 4.162 14 C 0.147 3.853 15 H 0.082 0.918 16 C 0.131 3.869 17 N -0.617 5.617 18 C -0.241 4.241 19 H 0.086 0.914 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.984 3.016 23 H -0.266 1.266 24 H -0.288 1.288 25 H -0.295 1.295 26 C 0.135 3.865 27 C 0.086 3.914 28 H 0.078 0.922 29 O -0.570 6.570 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.022 0.978 42 H 0.057 0.943 43 H 0.249 0.751 44 H 0.088 0.912 45 H -0.013 1.013 46 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 23.196 -2.232 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.329 5.329 3 C 0.307 3.693 4 O -0.455 6.455 5 C -0.112 4.112 6 H 0.140 0.860 7 C -0.142 4.142 8 C -0.147 4.147 9 C -0.195 4.195 10 C 0.256 3.744 11 F -0.185 7.185 12 F -0.191 7.191 13 C -0.200 4.200 14 C 0.042 3.958 15 H 0.101 0.899 16 C 0.005 3.995 17 N -0.345 5.345 18 C -0.369 4.369 19 H 0.104 0.896 20 C -0.255 4.255 21 N -0.597 5.597 22 Si 0.812 3.188 23 H -0.190 1.190 24 H -0.215 1.215 25 H -0.223 1.223 26 C 0.009 3.991 27 C 0.025 3.975 28 H 0.096 0.904 29 O -0.377 6.377 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.005 0.995 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.088 23.416 -1.802 24.030 hybrid contribution -0.249 -1.889 -0.096 1.908 sum -5.338 21.527 -1.898 22.260 Atomic orbital electron populations 1.22284 0.77655 1.04951 1.03208 1.47811 1.08043 1.04609 1.72430 1.21115 0.87619 0.85828 0.74768 1.90682 1.15865 1.87728 1.51258 1.21237 0.97890 0.91560 1.00510 0.85977 1.21448 0.96724 0.92326 1.03671 1.21502 0.98757 0.97323 0.97114 1.22603 0.97578 0.97011 1.02324 1.21146 0.83549 0.98841 0.70872 1.92988 1.76353 1.97527 1.51603 1.93004 1.76559 1.97507 1.51982 1.22749 1.00226 0.97239 0.99782 1.21689 0.97020 0.83057 0.94016 0.89943 1.21641 0.99171 0.84424 0.94283 1.44517 1.78031 1.02483 1.09458 1.19502 1.36807 0.85475 0.95110 0.89581 1.25652 1.01966 1.00361 0.97568 1.69994 1.54811 1.22698 1.12208 0.84936 0.76943 0.78829 0.78130 1.18987 1.21454 1.22260 1.22321 0.96346 0.94113 0.86291 1.23398 0.93331 0.94370 0.86398 0.90413 1.86420 1.61076 1.66878 1.23360 0.90792 0.90420 0.87913 0.91020 0.91478 0.90306 0.88175 0.88019 0.87743 0.88201 0.87527 0.95962 0.92558 0.94109 0.89422 0.99509 0.75789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.29 7.65 127.77 0.98 2.27 16 2 N -0.60 -17.44 2.89 -815.96 -2.35 -19.80 16 3 C 0.52 14.94 7.08 87.65 0.62 15.56 16 4 O -0.58 -21.69 15.35 -3.04 -0.05 -21.73 16 5 C -0.09 -1.71 1.60 -11.54 -0.02 -1.73 16 6 H 0.12 1.93 7.06 -2.39 -0.02 1.92 16 7 C -0.10 -1.75 4.49 30.59 0.14 -1.61 16 8 C -0.11 -1.18 5.80 30.59 0.18 -1.00 16 9 C -0.16 -1.72 5.45 30.59 0.17 -1.55 16 10 C 0.29 4.50 2.10 30.58 0.06 4.56 16 11 F -0.20 -3.51 16.02 44.97 0.72 -2.79 16 12 F -0.21 -3.94 17.06 44.97 0.77 -3.17 16 13 C -0.16 -2.67 4.37 30.58 0.13 -2.54 16 14 C 0.15 5.58 3.10 46.18 0.14 5.73 16 15 H 0.08 3.65 7.00 -2.39 -0.02 3.63 16 16 C 0.13 5.41 6.81 86.73 0.59 6.00 16 17 N -0.62 -31.24 3.39 -691.99 -2.35 -33.59 16 18 C -0.24 -13.09 10.27 84.04 0.86 -12.23 16 19 H 0.09 4.47 7.83 -2.91 -0.02 4.44 16 20 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 21 N -0.95 -54.80 10.09 21.65 0.22 -54.58 16 22 Si 0.98 44.38 29.55 68.60 2.03 46.41 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 26 C 0.14 6.64 5.62 86.85 0.49 7.13 16 27 C 0.09 3.30 4.00 31.99 0.13 3.43 16 28 H 0.08 2.72 7.27 -2.39 -0.02 2.70 16 29 O -0.57 -20.68 13.47 -148.98 -2.01 -22.69 16 30 H 0.07 1.39 6.88 -2.39 -0.02 1.37 16 31 H 0.08 1.84 6.10 -2.39 -0.01 1.82 16 32 H 0.10 1.59 6.01 -2.38 -0.01 1.57 16 33 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.08 0.82 7.80 -2.39 -0.02 0.80 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.11 1.70 4.53 -2.39 -0.01 1.69 16 41 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 2.10 5.95 -2.39 -0.01 2.09 16 43 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 44 H 0.09 4.72 5.87 -2.39 -0.01 4.71 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H 0.39 10.83 9.12 -74.06 -0.68 10.15 16 Total: -1.00 -71.54 357.77 2.26 -69.28 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.34 Total: 21.63 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 4.94 Total: 21.03 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.48 Total: -107.96 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -2.05 Total: -44.42 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 1.49 Total: -5.96 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.54 2.26 -69.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047524941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.403 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds