Wall clock time and date at job start Tue Mar 31 2020 17:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00338 * 2 1 4 4 H 1.08996 * 110.91755 * 32.44362 * 3 2 1 5 5 C 1.54911 * 111.00394 * 268.54058 * 3 2 1 6 6 N 1.47423 * 104.83220 * 204.91792 * 5 3 2 7 7 C 1.36941 * 125.64257 * 204.09804 * 6 5 3 8 8 H 1.07997 * 119.99520 * 164.86122 * 7 6 5 9 9 C 1.38815 * 120.00466 * 344.84705 * 7 6 5 10 10 N 1.31616 * 119.99663 * 350.14935 * 9 7 6 11 11 Si 1.86793 * 119.99813 * 170.14110 * 9 7 6 12 12 H 1.48500 * 109.46844 * 84.95782 * 11 9 7 13 13 H 1.48495 * 109.47658 * 324.95890 * 11 9 7 14 14 H 1.48501 * 109.47287 * 204.95398 * 11 9 7 15 15 C 1.47018 * 108.70638 * 24.35646 * 6 5 3 16 16 C 1.54338 * 107.26330 * 358.58593 * 15 6 5 17 17 H 1.09004 * 110.51358 * 96.45093 * 16 15 6 18 18 N 1.46494 * 111.00174 * 219.59951 * 16 15 6 19 19 C 1.34777 * 119.99909 * 268.78278 * 18 16 15 20 20 O 1.21284 * 119.99980 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00034 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.47407 * 180.02562 * 21 19 18 23 23 H 1.08998 * 110.67218 * 51.75708 * 22 21 19 24 24 C 1.54887 * 110.75873 * 175.00348 * 22 21 19 25 25 C 1.54266 * 104.19940 * 156.25549 * 24 22 21 26 26 C 1.53876 * 106.59349 * 336.38514 * 25 24 22 27 27 F 1.39905 * 110.02747 * 119.28730 * 26 25 24 28 28 F 1.39904 * 110.02999 * 240.66329 * 26 25 24 29 29 C 1.54263 * 106.60306 * 0.02562 * 26 25 24 30 30 H 1.09005 * 109.46921 * 60.00225 * 1 2 3 31 31 H 1.08998 * 109.47693 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47196 * 300.00793 * 1 2 3 33 33 H 1.09001 * 110.36226 * 86.07536 * 5 3 2 34 34 H 1.08997 * 110.46046 * 323.80841 * 5 3 2 35 35 H 0.97006 * 119.99781 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.88058 * 118.12714 * 15 6 5 37 37 H 1.08995 * 109.88272 * 239.29663 * 15 6 5 38 38 H 0.96993 * 120.00443 * 88.78456 * 18 16 15 39 39 H 1.09004 * 109.47459 * 299.99761 * 21 19 18 40 40 H 1.09001 * 109.47652 * 59.99651 * 21 19 18 41 41 H 1.09005 * 110.48297 * 274.93204 * 24 22 21 42 42 H 1.08998 * 110.48842 * 37.57073 * 24 22 21 43 43 H 1.09001 * 110.02949 * 95.67158 * 25 24 22 44 44 H 1.08999 * 110.03319 * 217.05150 * 25 24 22 45 45 H 1.08999 * 110.48534 * 264.93168 * 29 26 25 46 46 H 1.08992 * 110.48677 * 142.28517 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3836 2.0104 0.5462 5 6 2.2697 1.7976 -1.4457 6 7 3.3613 2.7804 -1.3195 7 6 3.6238 3.7986 -2.1969 8 1 4.2784 4.6068 -1.9059 9 6 3.0490 3.7916 -3.4604 10 7 2.4124 2.7219 -3.8878 11 14 3.1787 5.3006 -4.5537 12 1 4.4656 5.2663 -5.2939 13 1 3.1220 6.5254 -3.7160 14 1 2.0517 5.3097 -5.5207 15 6 4.1251 2.4826 -0.0991 16 6 3.4485 1.2737 0.5811 17 1 3.9550 0.3483 0.3069 18 7 3.4231 1.4367 2.0368 19 6 4.4342 0.9549 2.7865 20 8 5.3648 0.3859 2.2561 21 6 4.4078 1.1220 4.2839 22 6 5.6633 0.4913 4.8898 23 1 6.5592 0.8649 4.3940 24 6 5.7290 0.7550 6.4146 25 6 6.6195 -0.3818 6.9572 26 6 6.5328 -1.5321 5.9389 27 9 7.8019 -1.8082 5.4187 28 9 6.0070 -2.6751 6.5507 29 6 5.5932 -1.0540 4.8127 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.3763 2.2728 -1.8507 34 1 2.5781 0.9676 -2.0812 35 1 2.0103 2.7172 -4.7706 36 1 5.1552 2.2366 -0.3573 37 1 4.1037 3.3423 0.5706 38 1 2.6788 1.8913 2.4610 39 1 4.3797 2.1833 4.5307 40 1 3.5227 0.6313 4.6889 41 1 6.1844 1.7249 6.6147 42 1 4.7330 0.7023 6.8542 43 1 7.6502 -0.0386 7.0461 44 1 6.2516 -0.7132 7.9283 45 1 4.5750 -1.3986 4.9933 46 1 5.9495 -1.4045 3.8441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081773175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:21 Heat of formation + Delta-G solvation = -168.320487 kcal Electronic energy + Delta-G solvation = -29301.275626 eV Core-core repulsion = 24861.863922 eV Total energy + Delta-G solvation = -4439.411704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.05323 -47.12589 -39.98424 -38.46125 -37.39702 -35.92692 -34.04753 -32.03848 -31.30590 -29.02809 -28.71645 -27.37942 -26.16955 -25.82725 -24.07802 -21.36320 -21.18035 -20.72306 -20.23397 -19.83737 -17.85229 -17.35932 -17.03232 -16.67389 -16.45790 -16.20692 -15.55769 -15.18003 -14.94109 -14.68359 -14.51812 -14.37390 -14.19357 -14.04528 -13.71549 -13.46908 -13.28943 -13.23163 -12.82061 -12.59879 -12.27531 -12.06199 -12.02837 -11.85891 -11.68488 -11.47660 -11.30311 -11.28527 -10.99665 -10.98506 -10.88440 -10.84436 -10.80844 -10.21067 -10.03486 -9.87279 -9.71515 -9.16608 -8.70420 -8.65579 -6.85580 -5.81887 -3.18358 2.76357 3.22729 3.36487 3.41713 3.43337 3.55063 3.69295 3.93995 4.05839 4.11856 4.46070 4.61278 4.70278 4.77455 4.86268 4.94138 5.08171 5.14236 5.26116 5.32373 5.36670 5.37453 5.43997 5.45429 5.52757 5.55393 5.63690 5.64984 5.67787 5.78285 5.88882 5.89750 6.02158 6.03819 6.13472 6.45021 6.67956 6.86295 7.17047 7.37531 7.65294 7.67799 7.74726 8.16521 8.37975 9.09770 9.71738 10.38628 11.30938 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.002492 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.119081 B =11232.855708 C =11989.846104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.054 3.946 4 H 0.065 0.935 5 C 0.162 3.838 6 N -0.597 5.597 7 C -0.235 4.235 8 H 0.077 0.923 9 C -0.003 4.003 10 N -0.914 5.914 11 Si 0.912 3.088 12 H -0.286 1.286 13 H -0.281 1.281 14 H -0.289 1.289 15 C 0.130 3.870 16 C 0.138 3.862 17 H 0.104 0.896 18 N -0.717 5.717 19 C 0.510 3.490 20 O -0.536 6.536 21 C -0.133 4.133 22 C -0.074 4.074 23 H 0.097 0.903 24 C -0.118 4.118 25 C -0.163 4.163 26 C 0.279 3.721 27 F -0.198 7.198 28 F -0.203 7.203 29 C -0.156 4.156 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.255 0.745 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.397 0.603 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 -4.351 22.529 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.006 4.006 4 H 0.083 0.917 5 C 0.036 3.964 6 N -0.325 5.325 7 C -0.363 4.363 8 H 0.095 0.905 9 C -0.200 4.200 10 N -0.560 5.560 11 Si 0.742 3.258 12 H -0.213 1.213 13 H -0.206 1.206 14 H -0.215 1.215 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.122 0.878 18 N -0.367 5.367 19 C 0.296 3.704 20 O -0.413 6.413 21 C -0.173 4.173 22 C -0.093 4.093 23 H 0.115 0.885 24 C -0.155 4.155 25 C -0.201 4.201 26 C 0.243 3.757 27 F -0.179 7.179 28 F -0.184 7.184 29 C -0.194 4.194 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.230 0.770 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.584 -4.933 21.932 22.488 hybrid contribution -0.482 0.973 -0.484 1.188 sum 0.102 -3.960 21.448 21.811 Atomic orbital electron populations 1.22695 0.81608 1.02014 0.99875 1.87866 1.19205 1.27611 1.95094 1.23958 0.92504 0.83875 1.00250 0.91671 1.21704 0.92769 0.92762 0.89189 1.44261 1.30221 1.33793 1.24221 1.18971 1.26902 0.97922 0.92543 0.90542 1.24931 1.01055 0.97558 0.96497 1.69949 1.40402 1.26749 1.18861 0.86151 0.77315 0.82098 0.80237 1.21293 1.20632 1.21546 1.21634 0.95232 0.93405 0.89439 1.22073 0.95981 1.00614 0.78020 0.87837 1.46007 1.23891 1.59204 1.07593 1.20577 0.82260 0.78367 0.89220 1.90720 1.34211 1.42069 1.74268 1.21683 0.99575 1.03497 0.92506 1.21841 0.98955 0.93633 0.94882 0.88457 1.22434 1.00163 0.98141 0.94811 1.23157 1.03525 0.94721 0.98705 1.21900 0.79052 0.82659 0.92120 1.93027 1.42283 1.94689 1.87909 1.93002 1.86483 1.54511 1.84414 1.23443 1.00020 0.97047 0.98850 0.93608 0.90228 0.94796 0.91792 0.93669 0.93505 0.94813 0.95345 0.76956 0.88256 0.88656 0.89976 0.90348 0.88762 0.88840 0.88765 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.89 101.05 1.10 1.58 16 2 O -0.38 -6.71 10.51 -35.23 -0.37 -7.08 16 3 C 0.05 0.98 3.12 -24.58 -0.08 0.90 16 4 H 0.07 1.08 7.77 -51.93 -0.40 0.67 16 5 C 0.16 3.84 5.10 -2.53 -0.01 3.83 16 6 N -0.60 -15.11 3.39 -170.07 -0.58 -15.69 16 7 C -0.24 -6.49 10.21 -15.06 -0.15 -6.64 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.00 -0.08 5.38 -17.43 -0.09 -0.17 16 10 N -0.91 -26.53 10.92 55.49 0.61 -25.93 16 11 Si 0.91 21.69 29.56 -169.99 -5.03 16.67 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 15 C 0.13 2.76 7.01 -3.06 -0.02 2.74 16 16 C 0.14 2.50 3.04 -66.09 -0.20 2.30 16 17 H 0.10 2.13 7.55 -51.93 -0.39 1.74 16 18 N -0.72 -9.71 5.12 -52.02 -0.27 -9.98 16 19 C 0.51 6.77 7.66 -10.99 -0.08 6.69 16 20 O -0.54 -9.37 14.48 5.55 0.08 -9.29 16 21 C -0.13 -1.08 5.20 -27.88 -0.14 -1.23 16 22 C -0.07 -0.64 2.45 -88.63 -0.22 -0.86 16 23 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 24 C -0.12 -0.70 6.28 -25.07 -0.16 -0.85 16 25 C -0.16 -1.15 6.50 -25.61 -0.17 -1.32 16 26 C 0.28 2.85 2.57 -25.61 -0.07 2.78 16 27 F -0.20 -2.49 17.04 2.25 0.04 -2.45 16 28 F -0.20 -2.32 17.05 2.25 0.04 -2.28 16 29 C -0.16 -1.58 5.33 -25.08 -0.13 -1.72 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 33 H 0.06 1.64 7.31 -51.93 -0.38 1.26 16 34 H 0.05 1.22 7.95 -51.93 -0.41 0.80 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 38 H 0.40 4.15 8.56 -40.82 -0.35 3.80 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.59 7.99 -51.93 -0.41 0.17 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.36 8.05 -51.93 -0.42 -0.06 16 43 H 0.09 0.62 8.02 -51.93 -0.42 0.20 16 44 H 0.09 0.55 8.02 -51.93 -0.42 0.13 16 45 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 46 H 0.10 1.34 7.35 -51.93 -0.38 0.96 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -33.25 377.49 -7.52 -40.77 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.30 Total: 1.53 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -0.43 Total: 8.04 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.24 Total: -51.59 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.29 Total: -16.37 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.08 Total: -4.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.25 -7.52 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081773175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.550 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds