Wall clock time and date at job start Tue Mar 31 2020 17:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00338 * 2 1 4 4 H 1.08996 * 110.91755 * 32.44362 * 3 2 1 5 5 C 1.54911 * 111.00394 * 268.54058 * 3 2 1 6 6 N 1.47423 * 104.83220 * 204.91792 * 5 3 2 7 7 C 1.36941 * 125.64257 * 204.09804 * 6 5 3 8 8 H 1.07997 * 119.99520 * 164.86122 * 7 6 5 9 9 C 1.38815 * 120.00466 * 344.84705 * 7 6 5 10 10 N 1.31616 * 119.99663 * 350.14935 * 9 7 6 11 11 Si 1.86793 * 119.99813 * 170.14110 * 9 7 6 12 12 H 1.48500 * 109.46844 * 84.95782 * 11 9 7 13 13 H 1.48495 * 109.47658 * 324.95890 * 11 9 7 14 14 H 1.48501 * 109.47287 * 204.95398 * 11 9 7 15 15 C 1.47018 * 108.70638 * 24.35646 * 6 5 3 16 16 C 1.54338 * 107.26330 * 358.58593 * 15 6 5 17 17 H 1.09004 * 110.51358 * 96.45093 * 16 15 6 18 18 N 1.46494 * 111.00174 * 219.59951 * 16 15 6 19 19 C 1.34777 * 119.99909 * 268.78278 * 18 16 15 20 20 O 1.21284 * 119.99980 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00034 * 180.02562 * 19 18 16 22 22 C 1.53004 * 109.47407 * 180.02562 * 21 19 18 23 23 H 1.08998 * 110.67218 * 51.75708 * 22 21 19 24 24 C 1.54887 * 110.75873 * 175.00348 * 22 21 19 25 25 C 1.54266 * 104.19940 * 156.25549 * 24 22 21 26 26 C 1.53876 * 106.59349 * 336.38514 * 25 24 22 27 27 F 1.39905 * 110.02747 * 119.28730 * 26 25 24 28 28 F 1.39904 * 110.02999 * 240.66329 * 26 25 24 29 29 C 1.54263 * 106.60306 * 0.02562 * 26 25 24 30 30 H 1.09005 * 109.46921 * 60.00225 * 1 2 3 31 31 H 1.08998 * 109.47693 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47196 * 300.00793 * 1 2 3 33 33 H 1.09001 * 110.36226 * 86.07536 * 5 3 2 34 34 H 1.08997 * 110.46046 * 323.80841 * 5 3 2 35 35 H 0.97006 * 119.99781 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.88058 * 118.12714 * 15 6 5 37 37 H 1.08995 * 109.88272 * 239.29663 * 15 6 5 38 38 H 0.96993 * 120.00443 * 88.78456 * 18 16 15 39 39 H 1.09004 * 109.47459 * 299.99761 * 21 19 18 40 40 H 1.09001 * 109.47652 * 59.99651 * 21 19 18 41 41 H 1.09005 * 110.48297 * 274.93204 * 24 22 21 42 42 H 1.08998 * 110.48842 * 37.57073 * 24 22 21 43 43 H 1.09001 * 110.02949 * 95.67158 * 25 24 22 44 44 H 1.08999 * 110.03319 * 217.05150 * 25 24 22 45 45 H 1.08999 * 110.48534 * 264.93168 * 29 26 25 46 46 H 1.08992 * 110.48677 * 142.28517 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3836 2.0104 0.5462 5 6 2.2697 1.7976 -1.4457 6 7 3.3613 2.7804 -1.3195 7 6 3.6238 3.7986 -2.1969 8 1 4.2784 4.6068 -1.9059 9 6 3.0490 3.7916 -3.4604 10 7 2.4124 2.7219 -3.8878 11 14 3.1787 5.3006 -4.5537 12 1 4.4656 5.2663 -5.2939 13 1 3.1220 6.5254 -3.7160 14 1 2.0517 5.3097 -5.5207 15 6 4.1251 2.4826 -0.0991 16 6 3.4485 1.2737 0.5811 17 1 3.9550 0.3483 0.3069 18 7 3.4231 1.4367 2.0368 19 6 4.4342 0.9549 2.7865 20 8 5.3648 0.3859 2.2561 21 6 4.4078 1.1220 4.2839 22 6 5.6633 0.4913 4.8898 23 1 6.5592 0.8649 4.3940 24 6 5.7290 0.7550 6.4146 25 6 6.6195 -0.3818 6.9572 26 6 6.5328 -1.5321 5.9389 27 9 7.8019 -1.8082 5.4187 28 9 6.0070 -2.6751 6.5507 29 6 5.5932 -1.0540 4.8127 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.3763 2.2728 -1.8507 34 1 2.5781 0.9676 -2.0812 35 1 2.0103 2.7172 -4.7706 36 1 5.1552 2.2366 -0.3573 37 1 4.1037 3.3423 0.5706 38 1 2.6788 1.8913 2.4610 39 1 4.3797 2.1833 4.5307 40 1 3.5227 0.6313 4.6889 41 1 6.1844 1.7249 6.6147 42 1 4.7330 0.7023 6.8542 43 1 7.6502 -0.0386 7.0461 44 1 6.2516 -0.7132 7.9283 45 1 4.5750 -1.3986 4.9933 46 1 5.9495 -1.4045 3.8441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081773175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:20 Heat of formation + Delta-G solvation = -191.357851 kcal Electronic energy + Delta-G solvation = -29302.274601 eV Core-core repulsion = 24861.863922 eV Total energy + Delta-G solvation = -4440.410679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -49.91008 -48.00669 -41.15596 -39.80045 -38.24397 -37.48630 -35.54898 -33.75068 -32.23648 -30.53331 -29.59035 -28.92694 -27.55433 -26.83730 -25.70302 -22.60341 -22.26227 -21.90486 -21.49286 -20.93642 -19.12621 -18.61787 -18.20120 -17.76120 -17.63474 -17.23495 -17.02877 -16.52411 -16.07259 -15.87409 -15.74481 -15.40927 -15.32468 -15.23623 -14.95397 -14.61307 -14.49589 -14.36117 -13.98064 -13.94438 -13.79265 -13.37505 -13.08216 -12.96194 -12.73417 -12.68349 -12.67357 -12.44513 -12.36184 -12.22888 -12.09963 -12.04898 -11.90202 -11.63225 -11.58965 -11.46993 -10.88833 -10.78388 -10.52373 -10.04642 -8.92414 -7.93335 -5.33647 1.45978 1.47895 1.56973 1.72810 2.12706 2.44698 2.72686 2.82507 3.00634 3.25795 3.27684 3.42337 3.58569 3.71039 3.89644 3.97166 4.04127 4.06629 4.10475 4.24618 4.32473 4.37464 4.45750 4.49593 4.59302 4.63569 4.67902 4.72642 4.83023 4.85441 4.86345 4.87732 4.95622 5.01995 5.09118 5.22379 5.26401 5.39565 5.41663 5.52324 5.57276 6.11006 6.28771 6.63036 6.99600 7.35744 7.65781 8.32433 9.18111 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.018990 B = 0.002492 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.119081 B =11232.855708 C =11989.846104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.078 3.922 4 H 0.097 0.903 5 C 0.169 3.831 6 N -0.616 5.616 7 C -0.252 4.252 8 H 0.082 0.918 9 C -0.058 4.058 10 N -0.946 5.946 11 Si 0.982 3.018 12 H -0.286 1.286 13 H -0.265 1.265 14 H -0.291 1.291 15 C 0.131 3.869 16 C 0.155 3.845 17 H 0.072 0.928 18 N -0.704 5.704 19 C 0.504 3.496 20 O -0.585 6.585 21 C -0.119 4.119 22 C -0.075 4.075 23 H 0.072 0.928 24 C -0.104 4.104 25 C -0.158 4.158 26 C 0.265 3.735 27 F -0.219 7.219 28 F -0.212 7.212 29 C -0.158 4.158 30 H 0.032 0.968 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.039 0.961 34 H -0.001 1.001 35 H 0.251 0.749 36 H 0.008 0.992 37 H 0.049 0.951 38 H 0.417 0.583 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 -2.613 25.899 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.019 3.981 4 H 0.115 0.885 5 C 0.042 3.958 6 N -0.344 5.344 7 C -0.381 4.381 8 H 0.099 0.901 9 C -0.253 4.253 10 N -0.593 5.593 11 Si 0.809 3.191 12 H -0.212 1.212 13 H -0.190 1.190 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.048 3.952 17 H 0.091 0.909 18 N -0.356 5.356 19 C 0.293 3.707 20 O -0.465 6.465 21 C -0.158 4.158 22 C -0.094 4.094 23 H 0.090 0.910 24 C -0.141 4.141 25 C -0.195 4.195 26 C 0.229 3.771 27 F -0.200 7.200 28 F -0.193 7.193 29 C -0.196 4.196 30 H 0.051 0.949 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.255 0.745 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.901 -3.182 25.362 25.577 hybrid contribution 0.014 0.327 -1.559 1.592 sum -0.887 -2.855 23.804 23.991 Atomic orbital electron populations 1.22977 0.79268 1.03899 1.00768 1.87859 1.21783 1.26915 1.94957 1.23562 0.93213 0.84910 0.96446 0.88545 1.21467 0.91195 0.90810 0.92303 1.44543 1.31374 1.33491 1.24964 1.19383 1.26706 0.98714 0.93299 0.90050 1.25809 1.01040 1.00454 0.97956 1.70159 1.41448 1.28745 1.18958 0.85072 0.76867 0.78995 0.78191 1.21250 1.18982 1.21711 1.21718 0.93815 0.95438 0.88607 1.21477 0.95072 0.97669 0.80943 0.90947 1.45797 1.25048 1.59554 1.05236 1.21649 0.80911 0.76757 0.91430 1.90722 1.36101 1.44033 1.75630 1.21755 1.00481 1.06002 0.87603 1.21824 0.98374 0.92078 0.97149 0.90971 1.22440 1.01499 0.98337 0.91872 1.23197 1.04372 0.93606 0.98372 1.22405 0.78124 0.83330 0.93212 1.92982 1.43702 1.94914 1.88394 1.92977 1.86526 1.55317 1.84511 1.23439 1.00520 0.98645 0.96958 0.94907 0.87998 0.91600 0.94299 0.98290 0.94022 0.97369 0.93326 0.74491 0.84783 0.85284 0.88053 0.87732 0.88480 0.87076 0.87363 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.89 113.37 1.23 1.91 16 2 O -0.40 -13.75 10.51 -148.98 -1.57 -15.32 16 3 C 0.08 2.83 3.12 31.99 0.10 2.93 16 4 H 0.10 2.92 7.77 -2.39 -0.02 2.90 16 5 C 0.17 8.34 5.10 86.86 0.44 8.78 16 6 N -0.62 -32.07 3.39 -691.97 -2.35 -34.42 16 7 C -0.25 -14.19 10.21 84.03 0.86 -13.33 16 8 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 9 C -0.06 -3.31 5.38 84.86 0.46 -2.85 16 10 N -0.95 -57.04 10.92 21.65 0.24 -56.80 16 11 Si 0.98 45.15 29.56 68.60 2.03 47.18 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 15 C 0.13 5.64 7.01 86.73 0.61 6.25 16 16 C 0.16 5.64 3.04 46.19 0.14 5.78 16 17 H 0.07 3.12 7.55 -2.38 -0.02 3.10 16 18 N -0.70 -17.55 5.12 -436.90 -2.24 -19.79 16 19 C 0.50 12.56 7.66 87.66 0.67 13.23 16 20 O -0.59 -20.94 14.48 -3.04 -0.04 -20.99 16 21 C -0.12 -1.47 5.20 29.85 0.16 -1.31 16 22 C -0.08 -1.13 2.45 -9.51 -0.02 -1.15 16 23 H 0.07 1.46 7.88 -2.39 -0.02 1.45 16 24 C -0.10 -0.78 6.28 31.67 0.20 -0.59 16 25 C -0.16 -1.80 6.50 31.32 0.20 -1.59 16 26 C 0.27 5.25 2.57 31.32 0.08 5.33 16 27 F -0.22 -5.68 17.04 44.97 0.77 -4.92 16 28 F -0.21 -4.69 17.05 44.97 0.77 -3.92 16 29 C -0.16 -3.11 5.33 31.66 0.17 -2.94 16 30 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 33 H 0.04 2.08 7.31 -2.39 -0.02 2.06 16 34 H 0.00 -0.05 7.95 -2.39 -0.02 -0.07 16 35 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 37 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 38 H 0.42 7.01 8.56 -92.71 -0.79 6.22 16 39 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.13 0.84 7.99 -2.39 -0.02 0.82 16 41 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.10 0.32 8.05 -2.39 -0.02 0.30 16 43 H 0.10 1.06 8.02 -2.39 -0.02 1.04 16 44 H 0.11 0.91 8.02 -2.39 -0.02 0.89 16 45 H 0.11 1.76 7.91 -2.39 -0.02 1.74 16 46 H 0.07 1.84 7.35 -2.39 -0.02 1.82 16 Total: -1.00 -79.07 377.49 3.09 -75.98 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.19 Total: 12.55 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 5.29 Total: 20.45 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.35 Total: -111.01 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.61 Total: -36.31 kcal Atomic # 9 Polarization: -10.37 SS G_CDS: 1.53 Total: -8.84 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.07 3.09 -75.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081773175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.377 kcal (2) G-P(sol) polarization free energy of solvation -79.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds