Wall clock time and date at job start Tue Mar 31 2020 17:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00352 * 2 1 4 4 H 1.09001 * 110.77921 * 26.76317 * 3 2 1 5 5 C 1.54327 * 110.72273 * 263.53088 * 3 2 1 6 6 N 1.47025 * 107.26962 * 219.44217 * 5 3 2 7 7 C 1.36934 * 125.64558 * 178.89309 * 6 5 3 8 8 H 1.08005 * 119.99809 * 174.88049 * 7 6 5 9 9 C 1.38812 * 120.00307 * 354.87904 * 7 6 5 10 10 N 1.31613 * 119.99801 * 7.06287 * 9 7 6 11 11 Si 1.86801 * 119.99909 * 187.06790 * 9 7 6 12 12 H 1.48496 * 109.47245 * 94.98468 * 11 9 7 13 13 H 1.48499 * 109.46750 * 214.98764 * 11 9 7 14 14 H 1.48507 * 109.46977 * 334.98216 * 11 9 7 15 15 C 1.47430 * 108.70046 * 358.93704 * 6 5 3 16 16 C 1.54902 * 104.83545 * 24.12956 * 15 6 5 17 17 H 1.08999 * 111.03541 * 81.07736 * 16 15 6 18 18 N 1.46498 * 111.00551 * 204.91490 * 16 15 6 19 19 C 1.34776 * 119.99762 * 267.19515 * 18 16 15 20 20 O 1.21279 * 120.00259 * 0.02562 * 19 18 16 21 21 C 1.50709 * 119.99594 * 179.97438 * 19 18 16 22 22 H 1.09001 * 109.47206 * 59.99967 * 21 19 18 23 23 C 1.53004 * 109.46805 * 180.02562 * 21 19 18 24 24 C 1.52999 * 109.46755 * 179.97438 * 23 21 19 25 25 C 1.52998 * 109.47296 * 299.99881 * 24 23 21 26 26 C 1.53004 * 109.47121 * 60.00343 * 25 24 23 27 27 C 1.52998 * 109.47138 * 300.00067 * 21 19 18 28 28 F 1.39904 * 109.47286 * 300.00078 * 27 21 19 29 29 F 1.39902 * 109.46895 * 59.99934 * 27 21 19 30 30 H 1.08993 * 109.47690 * 59.99712 * 1 2 3 31 31 H 1.09006 * 109.47234 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46824 * 299.99423 * 1 2 3 33 33 H 1.08996 * 109.87929 * 338.85307 * 5 3 2 34 34 H 1.08994 * 109.88415 * 99.87001 * 5 3 2 35 35 H 0.97005 * 120.00203 * 179.97438 * 10 9 7 36 36 H 1.08999 * 110.36469 * 265.28712 * 15 6 5 37 37 H 1.09001 * 110.36309 * 142.97075 * 15 6 5 38 38 H 0.97001 * 119.99524 * 87.19834 * 18 16 15 39 39 H 1.08999 * 109.46776 * 300.00034 * 23 21 19 40 40 H 1.08997 * 109.47028 * 60.00051 * 23 21 19 41 41 H 1.09001 * 109.47097 * 59.99812 * 24 23 21 42 42 H 1.08999 * 109.46704 * 179.97438 * 24 23 21 43 43 H 1.09001 * 109.46883 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47354 * 300.00316 * 25 24 23 45 45 H 1.08997 * 109.47028 * 59.99773 * 26 25 24 46 46 H 1.08995 * 109.47029 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0288 0.4589 5 6 2.3810 1.7381 -1.4342 6 7 3.6685 2.4439 -1.3582 7 6 4.3546 2.9690 -2.4205 8 1 5.2541 3.5427 -2.2520 9 6 3.8943 2.7640 -3.7139 10 7 2.7285 2.1867 -3.9137 11 14 4.9294 3.3075 -5.1708 12 1 5.7403 2.1622 -5.6566 13 1 4.0394 3.7816 -6.2609 14 1 5.8314 4.4108 -4.7531 15 6 4.0988 2.4917 0.0511 16 6 3.3817 1.2957 0.7255 17 1 3.9156 0.3638 0.5393 18 7 3.2169 1.5250 2.1631 19 6 4.1465 1.0736 3.0283 20 8 5.1196 0.4781 2.6169 21 6 3.9772 1.3100 4.5071 22 1 3.0527 0.8427 4.8463 23 6 5.1626 0.7022 5.2596 24 6 4.9911 0.9427 6.7608 25 6 4.9317 2.4472 7.0328 26 6 3.7463 3.0550 6.2802 27 6 3.9180 2.8144 4.7796 28 9 5.1046 3.4143 4.3442 29 9 2.8344 3.3707 4.0913 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.4767 0.8602 -2.0731 34 1 1.6139 2.4031 -1.8308 35 1 2.4066 2.0438 -4.8175 36 1 3.7872 3.4294 0.5113 37 1 5.1802 2.3744 0.1217 38 1 2.4388 2.0016 2.4920 39 1 5.2052 -0.3696 5.0655 40 1 6.0868 1.1699 4.9203 41 1 4.0668 0.4753 7.1004 42 1 5.8353 0.5093 7.2970 43 1 4.8099 2.6185 8.1023 44 1 5.8559 2.9146 6.6932 45 1 2.8220 2.5876 6.6198 46 1 3.7042 4.1269 6.4736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081982516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:44 Heat of formation + Delta-G solvation = -162.591238 kcal Electronic energy + Delta-G solvation = -30703.252737 eV Core-core repulsion = 26264.089472 eV Total energy + Delta-G solvation = -4439.163265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.23918 -47.18830 -39.95525 -38.40618 -37.34392 -35.86883 -34.05016 -32.05445 -31.41132 -30.35884 -28.72290 -27.13987 -26.09873 -24.62866 -23.60306 -23.08477 -20.98579 -20.51983 -20.25942 -19.94781 -17.92342 -17.49255 -16.94857 -16.81462 -16.55813 -16.17229 -15.56784 -15.08394 -14.61887 -14.52859 -14.35053 -14.25517 -14.21069 -14.09405 -13.61281 -13.47687 -13.38306 -13.20663 -13.02376 -12.69698 -12.42968 -12.20587 -12.04499 -11.86121 -11.69802 -11.52642 -11.23364 -11.19858 -11.05447 -10.99782 -10.78978 -10.72009 -10.62636 -10.12785 -9.97415 -9.78431 -9.70660 -9.12012 -8.72434 -8.53395 -6.85477 -5.71877 -3.05290 2.55549 3.13148 3.43422 3.47462 3.48777 3.50312 3.78392 3.89813 4.09414 4.15484 4.51038 4.54423 4.59854 4.65024 4.80765 4.83647 4.96466 5.16455 5.21524 5.27194 5.40535 5.42184 5.49964 5.53894 5.59728 5.62884 5.66872 5.70502 5.74376 5.83520 5.86827 5.92987 6.03554 6.07805 6.19305 6.54704 6.66551 6.87686 7.26977 7.50142 7.64730 7.74945 7.88604 8.22442 8.32809 9.20095 9.80398 10.44313 11.40038 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.003389 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.395944 B = 8260.060935 C = 9070.504938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.107 0.893 18 N -0.710 5.710 19 C 0.516 3.484 20 O -0.525 6.525 21 C -0.148 4.148 22 H 0.123 0.877 23 C -0.101 4.101 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.156 4.156 27 C 0.299 3.701 28 F -0.188 7.188 29 F -0.196 7.196 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.253 0.747 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.399 0.601 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 -1.425 24.316 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.125 0.875 18 N -0.362 5.362 19 C 0.300 3.700 20 O -0.400 6.400 21 C -0.171 4.171 22 H 0.141 0.859 23 C -0.139 4.139 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.194 4.194 27 C 0.262 3.738 28 F -0.169 7.169 29 F -0.177 7.177 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.235 0.765 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.369 -1.982 23.730 23.931 hybrid contribution -0.322 0.914 -0.857 1.294 sum -2.692 -1.068 22.874 23.057 Atomic orbital electron populations 1.22708 0.81784 1.02021 0.99755 1.87905 1.19053 1.27590 1.95043 1.23845 0.92941 0.84039 0.99502 0.91915 1.21559 0.88170 0.97337 0.88989 1.44250 1.21116 1.66645 1.00756 1.19086 1.05682 1.26915 0.84021 0.90120 1.24833 0.97308 1.00754 0.97323 1.69951 1.18334 1.48412 1.20047 0.86083 0.79302 0.78008 0.82304 1.21504 1.21778 1.20564 1.21821 0.97778 0.93855 0.86181 1.22434 0.96491 1.01142 0.77341 0.87463 1.46094 1.25039 1.57755 1.07296 1.20057 0.83237 0.79505 0.87242 1.90726 1.29422 1.40839 1.79046 1.22464 1.04685 0.94365 0.95543 0.85923 1.21386 0.96588 1.02422 0.93468 1.21651 1.02884 0.95802 0.95811 1.21565 0.97918 0.96004 1.00476 1.22528 1.01889 1.04205 0.90745 1.20900 0.72307 0.89169 0.91434 1.93054 1.47399 1.85227 1.91241 1.92981 1.55677 1.87170 1.81899 0.93630 0.90246 0.94866 0.91798 0.93540 0.93678 0.95879 0.93147 0.76519 0.89571 0.89909 0.91350 0.90544 0.90328 0.90611 0.88549 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.59 16 2 O -0.38 -7.14 10.43 -35.23 -0.37 -7.50 16 3 C 0.06 1.10 3.09 -24.90 -0.08 1.02 16 4 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 5 C 0.16 4.11 5.16 -3.06 -0.02 4.10 16 6 N -0.60 -15.96 3.39 -170.07 -0.58 -16.54 16 7 C -0.23 -6.59 10.27 -15.06 -0.15 -6.74 16 8 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 9 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 10 N -0.92 -27.34 10.36 55.49 0.57 -26.76 16 11 Si 0.91 22.57 29.56 -169.99 -5.02 17.55 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.13 2.97 6.93 -2.53 -0.02 2.95 16 16 C 0.13 2.60 3.15 -65.79 -0.21 2.39 16 17 H 0.11 2.39 7.54 -51.93 -0.39 2.00 16 18 N -0.71 -11.34 4.89 -51.73 -0.25 -11.60 16 19 C 0.52 8.08 6.89 -10.98 -0.08 8.00 16 20 O -0.52 -10.22 15.62 5.56 0.09 -10.13 16 21 C -0.15 -1.59 2.24 -91.77 -0.21 -1.79 16 22 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 23 C -0.10 -0.97 4.37 -26.73 -0.12 -1.08 16 24 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 25 C -0.12 -0.73 5.80 -26.73 -0.16 -0.89 16 26 C -0.16 -1.06 5.45 -26.75 -0.15 -1.21 16 27 C 0.30 3.16 1.62 -26.76 -0.04 3.12 16 28 F -0.19 -2.56 15.73 2.25 0.04 -2.53 16 29 F -0.20 -2.31 14.84 2.25 0.03 -2.27 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 33 H 0.06 1.80 7.21 -51.93 -0.37 1.43 16 34 H 0.05 1.25 7.61 -51.93 -0.40 0.85 16 35 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.40 5.47 6.74 -40.82 -0.28 5.20 16 39 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.08 0.95 7.76 -51.93 -0.40 0.55 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.54 7.80 -51.93 -0.41 0.13 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -34.01 369.47 -7.55 -41.57 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.26 Total: 2.38 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -0.37 Total: 10.27 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.26 Total: -54.90 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.28 Total: -17.63 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.01 -7.55 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081982516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.025 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds