Wall clock time and date at job start Tue Mar 31 2020 17:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00352 * 2 1 4 4 H 1.09001 * 110.77921 * 26.76317 * 3 2 1 5 5 C 1.54327 * 110.72273 * 263.53088 * 3 2 1 6 6 N 1.47025 * 107.26962 * 219.44217 * 5 3 2 7 7 C 1.36934 * 125.64558 * 178.89309 * 6 5 3 8 8 H 1.08005 * 119.99809 * 174.88049 * 7 6 5 9 9 C 1.38812 * 120.00307 * 354.87904 * 7 6 5 10 10 N 1.31613 * 119.99801 * 7.06287 * 9 7 6 11 11 Si 1.86801 * 119.99909 * 187.06790 * 9 7 6 12 12 H 1.48496 * 109.47245 * 94.98468 * 11 9 7 13 13 H 1.48499 * 109.46750 * 214.98764 * 11 9 7 14 14 H 1.48507 * 109.46977 * 334.98216 * 11 9 7 15 15 C 1.47430 * 108.70046 * 358.93704 * 6 5 3 16 16 C 1.54902 * 104.83545 * 24.12956 * 15 6 5 17 17 H 1.08999 * 111.03541 * 81.07736 * 16 15 6 18 18 N 1.46498 * 111.00551 * 204.91490 * 16 15 6 19 19 C 1.34776 * 119.99762 * 267.19515 * 18 16 15 20 20 O 1.21279 * 120.00259 * 0.02562 * 19 18 16 21 21 C 1.50709 * 119.99594 * 179.97438 * 19 18 16 22 22 H 1.09001 * 109.47206 * 59.99967 * 21 19 18 23 23 C 1.53004 * 109.46805 * 180.02562 * 21 19 18 24 24 C 1.52999 * 109.46755 * 179.97438 * 23 21 19 25 25 C 1.52998 * 109.47296 * 299.99881 * 24 23 21 26 26 C 1.53004 * 109.47121 * 60.00343 * 25 24 23 27 27 C 1.52998 * 109.47138 * 300.00067 * 21 19 18 28 28 F 1.39904 * 109.47286 * 300.00078 * 27 21 19 29 29 F 1.39902 * 109.46895 * 59.99934 * 27 21 19 30 30 H 1.08993 * 109.47690 * 59.99712 * 1 2 3 31 31 H 1.09006 * 109.47234 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46824 * 299.99423 * 1 2 3 33 33 H 1.08996 * 109.87929 * 338.85307 * 5 3 2 34 34 H 1.08994 * 109.88415 * 99.87001 * 5 3 2 35 35 H 0.97005 * 120.00203 * 179.97438 * 10 9 7 36 36 H 1.08999 * 110.36469 * 265.28712 * 15 6 5 37 37 H 1.09001 * 110.36309 * 142.97075 * 15 6 5 38 38 H 0.97001 * 119.99524 * 87.19834 * 18 16 15 39 39 H 1.08999 * 109.46776 * 300.00034 * 23 21 19 40 40 H 1.08997 * 109.47028 * 60.00051 * 23 21 19 41 41 H 1.09001 * 109.47097 * 59.99812 * 24 23 21 42 42 H 1.08999 * 109.46704 * 179.97438 * 24 23 21 43 43 H 1.09001 * 109.46883 * 180.02562 * 25 24 23 44 44 H 1.08997 * 109.47354 * 300.00316 * 25 24 23 45 45 H 1.08997 * 109.47028 * 59.99773 * 26 25 24 46 46 H 1.08995 * 109.47029 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0288 0.4589 5 6 2.3810 1.7381 -1.4342 6 7 3.6685 2.4439 -1.3582 7 6 4.3546 2.9690 -2.4205 8 1 5.2541 3.5427 -2.2520 9 6 3.8943 2.7640 -3.7139 10 7 2.7285 2.1867 -3.9137 11 14 4.9294 3.3075 -5.1708 12 1 5.7403 2.1622 -5.6566 13 1 4.0394 3.7816 -6.2609 14 1 5.8314 4.4108 -4.7531 15 6 4.0988 2.4917 0.0511 16 6 3.3817 1.2957 0.7255 17 1 3.9156 0.3638 0.5393 18 7 3.2169 1.5250 2.1631 19 6 4.1465 1.0736 3.0283 20 8 5.1196 0.4781 2.6169 21 6 3.9772 1.3100 4.5071 22 1 3.0527 0.8427 4.8463 23 6 5.1626 0.7022 5.2596 24 6 4.9911 0.9427 6.7608 25 6 4.9317 2.4472 7.0328 26 6 3.7463 3.0550 6.2802 27 6 3.9180 2.8144 4.7796 28 9 5.1046 3.4143 4.3442 29 9 2.8344 3.3707 4.0913 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.4767 0.8602 -2.0731 34 1 1.6139 2.4031 -1.8308 35 1 2.4066 2.0438 -4.8175 36 1 3.7872 3.4294 0.5113 37 1 5.1802 2.3744 0.1217 38 1 2.4388 2.0016 2.4920 39 1 5.2052 -0.3696 5.0655 40 1 6.0868 1.1699 4.9203 41 1 4.0668 0.4753 7.1004 42 1 5.8353 0.5093 7.2970 43 1 4.8099 2.6185 8.1023 44 1 5.8559 2.9146 6.6932 45 1 2.8220 2.5876 6.6198 46 1 3.7042 4.1269 6.4736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081982516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:43 Heat of formation + Delta-G solvation = -186.147314 kcal Electronic energy + Delta-G solvation = -30704.274206 eV Core-core repulsion = 26264.089472 eV Total energy + Delta-G solvation = -4440.184733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.12143 -48.09718 -41.29131 -39.87875 -38.19123 -37.52691 -35.69934 -33.81181 -32.42049 -31.11693 -30.45908 -28.89252 -27.54908 -26.27092 -24.75167 -23.76642 -22.44405 -22.14045 -21.61963 -20.95729 -19.29620 -18.68645 -18.36384 -17.96441 -17.68153 -17.31164 -17.16314 -16.60047 -15.97795 -15.86238 -15.68756 -15.48156 -15.22543 -15.10371 -14.88894 -14.68697 -14.55575 -14.38484 -14.11342 -13.98193 -13.69051 -13.59964 -13.31881 -13.16254 -13.02382 -12.80512 -12.73581 -12.58438 -12.35870 -12.32489 -12.08675 -11.91710 -11.82669 -11.68893 -11.56698 -11.39069 -10.94864 -10.79371 -10.63037 -10.17478 -9.01385 -7.92236 -5.29586 1.34607 1.43264 1.46557 1.55007 1.87882 2.43280 2.66823 2.72187 3.03555 3.09608 3.26441 3.30974 3.47041 3.70790 3.83853 3.86200 3.90134 4.00250 4.04392 4.15893 4.24867 4.28694 4.33425 4.40339 4.56566 4.62085 4.62740 4.73742 4.74406 4.85359 4.88885 4.91114 5.04536 5.09089 5.22863 5.26430 5.27175 5.30882 5.40425 5.46092 5.60959 6.09165 6.26833 6.37355 7.00446 7.07113 7.64787 8.28380 9.17865 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.003389 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.395944 B = 8260.060935 C = 9070.504938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.094 0.906 5 C 0.175 3.825 6 N -0.620 5.620 7 C -0.253 4.253 8 H 0.081 0.919 9 C -0.058 4.058 10 N -0.945 5.945 11 Si 0.982 3.018 12 H -0.288 1.288 13 H -0.288 1.288 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.148 3.852 17 H 0.079 0.921 18 N -0.701 5.701 19 C 0.508 3.492 20 O -0.569 6.569 21 C -0.139 4.139 22 H 0.163 0.837 23 C -0.101 4.101 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.148 4.148 27 C 0.287 3.713 28 F -0.213 7.213 29 F -0.204 7.204 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.250 0.750 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.413 0.587 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.057 0.943 45 H 0.127 0.873 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -1.210 27.309 27.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C 0.019 3.981 4 H 0.111 0.889 5 C 0.049 3.951 6 N -0.348 5.348 7 C -0.381 4.381 8 H 0.099 0.901 9 C -0.252 4.252 10 N -0.593 5.593 11 Si 0.809 3.191 12 H -0.214 1.214 13 H -0.214 1.214 14 H -0.192 1.192 15 C 0.006 3.994 16 C 0.041 3.959 17 H 0.097 0.903 18 N -0.353 5.353 19 C 0.295 3.705 20 O -0.448 6.448 21 C -0.160 4.160 22 H 0.180 0.820 23 C -0.139 4.139 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.185 4.185 27 C 0.250 3.750 28 F -0.194 7.194 29 F -0.185 7.185 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.252 0.748 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.076 0.924 45 H 0.145 0.855 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.687 -1.752 26.776 27.086 hybrid contribution 0.081 0.817 -1.798 1.977 sum -3.607 -0.935 24.978 25.254 Atomic orbital electron populations 1.23016 0.79181 1.04055 1.00808 1.87888 1.21909 1.26722 1.94928 1.23459 0.93441 0.85345 0.95882 0.88864 1.21302 0.87001 0.94891 0.91920 1.44509 1.21859 1.66563 1.01894 1.19440 1.06074 1.27385 0.85239 0.90097 1.25701 0.98459 1.01137 0.99902 1.70160 1.19608 1.49271 1.20266 0.85025 0.77722 0.77764 0.78591 1.21448 1.21449 1.19227 1.21875 0.97111 0.95576 0.84880 1.21863 0.95879 0.98367 0.79742 0.90325 1.45933 1.25920 1.58015 1.05470 1.21058 0.82026 0.78042 0.89376 1.90709 1.31117 1.42686 1.80273 1.22578 1.06977 0.95231 0.91238 0.81984 1.21407 0.94870 1.01545 0.96062 1.21644 1.04641 0.96290 0.92721 1.21602 0.96851 0.95502 1.01935 1.22604 1.03538 1.05159 0.87235 1.21462 0.71211 0.88470 0.93819 1.93011 1.48992 1.85632 1.91756 1.92960 1.55847 1.87250 1.82414 0.94578 0.87856 0.91714 0.95975 0.96020 0.94043 0.94766 0.94900 0.74771 0.90210 0.92829 0.88783 0.89609 0.87523 0.92428 0.85501 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.74 10.43 -148.98 -1.55 -16.29 16 3 C 0.08 3.07 3.09 31.78 0.10 3.17 16 4 H 0.09 3.11 7.69 -2.39 -0.02 3.09 16 5 C 0.17 9.07 5.16 86.73 0.45 9.51 16 6 N -0.62 -34.31 3.39 -691.98 -2.35 -36.66 16 7 C -0.25 -15.04 10.27 84.03 0.86 -14.17 16 8 H 0.08 4.65 7.84 -2.91 -0.02 4.63 16 9 C -0.06 -3.44 5.48 84.86 0.46 -2.97 16 10 N -0.95 -58.07 10.36 21.65 0.22 -57.85 16 11 Si 0.98 47.33 29.56 68.60 2.03 49.36 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 C 0.13 6.19 6.93 86.85 0.60 6.79 16 16 C 0.15 5.99 3.15 46.38 0.15 6.13 16 17 H 0.08 3.67 7.54 -2.39 -0.02 3.65 16 18 N -0.70 -21.84 4.89 -435.97 -2.13 -23.97 16 19 C 0.51 15.75 6.89 87.66 0.60 16.36 16 20 O -0.57 -22.90 15.62 -3.03 -0.05 -22.95 16 21 C -0.14 -2.68 2.24 -11.54 -0.03 -2.70 16 22 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 23 C -0.10 -1.80 4.37 30.60 0.13 -1.67 16 24 C -0.12 -1.04 5.92 30.59 0.18 -0.86 16 25 C -0.12 -1.05 5.80 30.59 0.18 -0.87 16 26 C -0.15 -1.46 5.45 30.58 0.17 -1.29 16 27 C 0.29 5.48 1.62 30.58 0.05 5.53 16 28 F -0.21 -5.75 15.73 44.97 0.71 -5.05 16 29 F -0.20 -4.30 14.84 44.97 0.67 -3.63 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.06 1.34 8.11 -2.39 -0.02 1.33 16 33 H 0.02 1.31 7.21 -2.39 -0.02 1.30 16 34 H 0.02 1.21 7.61 -2.39 -0.02 1.19 16 35 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 36 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.41 10.46 6.74 -92.71 -0.62 9.83 16 39 H 0.08 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.05 1.26 7.76 -2.39 -0.02 1.24 16 41 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 43 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.06 0.72 7.80 -2.39 -0.02 0.70 16 45 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -79.25 369.47 3.04 -76.20 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.36 Total: 15.97 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 5.14 Total: 24.86 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.25 Total: -118.48 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.60 Total: -39.24 kcal Atomic # 9 Polarization: -10.05 SS G_CDS: 1.37 Total: -8.68 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -79.25 3.04 -76.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081982516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.945 kcal (2) G-P(sol) polarization free energy of solvation -79.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds