Wall clock time and date at job start Tue Mar 31 2020 17:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09002 * 110.64007 * 29.30105 * 3 2 1 5 5 C 1.54328 * 110.71910 * 266.15971 * 3 2 1 6 6 N 1.47013 * 107.26868 * 219.44247 * 5 3 2 7 7 C 1.36939 * 125.64997 * 178.90504 * 6 5 3 8 8 H 1.07997 * 120.00335 * 180.02562 * 7 6 5 9 9 C 1.38813 * 119.99580 * 0.02732 * 7 6 5 10 10 N 1.31614 * 120.00203 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99758 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47225 * 0.02562 * 11 9 7 13 13 H 1.48510 * 109.47110 * 119.99865 * 11 9 7 14 14 H 1.48496 * 109.47165 * 239.99610 * 11 9 7 15 15 C 1.47425 * 108.70665 * 358.93918 * 6 5 3 16 16 C 1.55122 * 104.94135 * 24.00534 * 15 6 5 17 17 H 1.09004 * 110.93495 * 81.21164 * 16 15 6 18 18 N 1.46496 * 111.16448 * 205.13129 * 16 15 6 19 19 C 1.34777 * 119.99850 * 267.16699 * 18 16 15 20 20 O 1.21276 * 120.00052 * 0.02562 * 19 18 16 21 21 C 1.50698 * 119.99996 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.47260 * 300.00481 * 21 19 18 23 23 C 1.52999 * 109.47330 * 180.02562 * 22 21 19 24 24 C 1.53005 * 109.47253 * 59.99808 * 23 22 21 25 25 F 1.39901 * 109.47233 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47378 * 59.99931 * 24 23 22 27 27 C 1.53003 * 109.46878 * 299.99865 * 24 23 22 28 28 C 1.52998 * 109.46718 * 60.00157 * 27 24 23 29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 32 32 H 1.08997 * 109.88192 * 338.86265 * 5 3 2 33 33 H 1.09002 * 109.88072 * 99.86906 * 5 3 2 34 34 H 0.97003 * 120.00387 * 180.02562 * 10 9 7 35 35 H 1.08999 * 110.36610 * 142.96289 * 15 6 5 36 36 H 1.08998 * 110.36867 * 265.29091 * 15 6 5 37 37 H 0.97000 * 120.00431 * 87.16903 * 18 16 15 38 38 H 1.09000 * 109.47001 * 60.00083 * 21 19 18 39 39 H 1.09007 * 109.47172 * 299.99744 * 22 21 19 40 40 H 1.08999 * 109.47558 * 59.99860 * 22 21 19 41 41 H 1.09000 * 109.46960 * 299.99620 * 23 22 21 42 42 H 1.08999 * 109.47618 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47282 * 300.00156 * 27 24 23 44 44 H 1.08998 * 109.46841 * 179.97438 * 27 24 23 45 45 H 1.08999 * 109.46821 * 179.97438 * 28 27 24 46 46 H 1.09000 * 109.47245 * 59.99976 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3540 2.0183 0.4992 5 6 2.3207 1.7649 -1.4402 6 7 3.6105 2.4696 -1.4051 7 6 4.2517 3.0150 -2.4852 8 1 5.2004 3.5142 -2.3546 9 6 3.6822 2.9260 -3.7480 10 7 2.5263 2.3171 -3.9073 11 14 4.5573 3.6692 -5.2216 12 1 5.8312 4.2909 -4.7791 13 1 4.8458 2.6038 -6.2152 14 1 3.6907 4.7031 -5.8422 15 6 4.0996 2.4914 -0.0145 16 6 3.4089 1.2836 0.6714 17 1 3.9351 0.3555 0.4479 18 7 3.3002 1.4880 2.1179 19 6 4.2625 1.0220 2.9385 20 8 5.2186 0.4340 2.4793 21 6 4.1510 1.2327 4.4265 22 6 4.1029 2.7321 4.7271 23 6 3.9903 2.9461 6.2379 24 6 5.2039 2.3253 6.9328 25 9 5.1007 2.5204 8.3143 26 9 6.3726 2.9330 6.4616 27 6 5.2519 0.8258 6.6322 28 6 5.3645 0.6120 5.1214 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 2.3891 0.8991 -2.0989 33 1 1.5378 2.4369 -1.7918 34 1 2.1285 2.2546 -4.7898 35 1 5.1830 2.3732 0.0084 36 1 3.8080 3.4202 0.4758 37 1 2.5356 1.9585 2.4852 38 1 3.2402 0.7593 4.7932 39 1 5.0136 3.2057 4.3604 40 1 3.2386 3.1745 4.2318 41 1 3.0797 2.4725 6.6050 42 1 3.9565 4.0143 6.4521 43 1 4.3414 0.3523 6.9994 44 1 6.1167 0.3837 7.1269 45 1 5.3992 -0.4562 4.9073 46 1 6.2751 1.0855 4.7543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082174548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:13 Heat of formation + Delta-G solvation = -167.952005 kcal Electronic energy + Delta-G solvation = -29790.381790 eV Core-core repulsion = 25350.986065 eV Total energy + Delta-G solvation = -4439.395725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.21785 -47.20421 -40.19412 -38.46561 -37.10596 -35.90203 -34.13131 -31.95923 -31.42052 -30.55706 -28.73669 -27.12873 -26.15685 -24.52530 -23.60775 -23.35566 -21.06353 -20.55175 -20.31917 -19.78312 -17.77009 -17.44984 -17.14261 -16.82849 -16.52639 -16.40292 -15.58319 -15.11051 -14.91508 -14.56945 -14.37228 -14.28476 -14.05628 -13.94705 -13.69632 -13.49502 -13.31671 -13.21748 -12.93889 -12.80381 -12.45509 -12.25393 -12.07194 -11.94840 -11.83948 -11.63764 -11.52831 -11.27054 -11.04348 -11.03083 -10.84092 -10.76005 -10.48090 -10.14693 -10.01092 -9.82624 -9.68892 -9.15219 -8.78642 -8.60226 -6.91208 -5.75569 -3.10643 2.71394 3.19148 3.39067 3.44753 3.45015 3.47357 3.73209 4.00261 4.03431 4.10686 4.45002 4.48918 4.55475 4.69427 4.74320 4.86815 4.99216 5.10973 5.22108 5.28540 5.36021 5.38765 5.41489 5.46225 5.54066 5.59022 5.61596 5.64389 5.69220 5.81700 5.83852 5.89657 6.00898 6.02550 6.13209 6.49099 6.59669 6.82382 7.22392 7.45644 7.63171 7.69217 7.83728 8.17791 8.35446 9.15398 9.75497 10.38264 11.35869 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002788 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.279861 B =10041.659383 C =11044.423031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.061 0.939 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.107 0.893 18 N -0.714 5.714 19 C 0.518 3.482 20 O -0.534 6.534 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.155 4.155 24 C 0.286 3.714 25 F -0.205 7.205 26 F -0.197 7.197 27 C -0.157 4.157 28 C -0.100 4.100 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.253 0.747 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.395 0.605 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -1.631 22.252 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.003 4.003 4 H 0.079 0.921 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.125 0.875 18 N -0.365 5.365 19 C 0.304 3.696 20 O -0.410 6.410 21 C -0.132 4.132 22 C -0.150 4.150 23 C -0.193 4.193 24 C 0.250 3.750 25 F -0.186 7.186 26 F -0.178 7.178 27 C -0.195 4.195 28 C -0.138 4.138 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.229 0.771 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.359 -2.194 21.695 21.933 hybrid contribution -0.242 0.942 -0.522 1.104 sum -2.601 -1.252 21.173 21.369 Atomic orbital electron populations 1.22704 0.81736 1.02036 0.99763 1.87910 1.19090 1.27603 1.95061 1.23848 0.92806 0.84037 0.99645 0.92057 1.21568 0.88429 0.97103 0.89045 1.44254 1.20767 1.66112 1.01640 1.19127 1.02447 1.29117 0.84945 0.90072 1.24821 0.97298 1.00691 0.97536 1.69945 1.17739 1.47412 1.21865 0.86005 0.78602 0.78283 0.82641 1.20403 1.21659 1.21743 1.21849 0.97598 0.93695 0.86473 1.22421 0.96256 1.01178 0.77522 0.87534 1.45942 1.24671 1.58510 1.07342 1.20370 0.82548 0.78531 0.88195 1.90729 1.31492 1.41260 1.77479 1.21424 1.01326 0.97524 0.92932 1.21531 1.04654 0.94618 0.94243 1.22508 0.96939 1.03278 0.96595 1.21163 0.83983 0.94432 0.75471 1.93005 1.96392 1.96373 1.32799 1.93014 1.51338 1.85275 1.88182 1.22555 1.05512 0.92343 0.99109 1.21329 0.98221 1.02926 0.91338 0.90261 0.93591 0.94882 0.91983 0.93387 0.93704 0.93198 0.95997 0.77093 0.88102 0.89892 0.89705 0.88514 0.89034 0.88704 0.89123 0.89496 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.86 101.05 1.10 1.57 16 2 O -0.38 -6.79 10.43 -35.23 -0.37 -7.15 16 3 C 0.06 1.02 3.06 -24.90 -0.08 0.94 16 4 H 0.06 0.97 7.71 -51.93 -0.40 0.57 16 5 C 0.16 3.92 5.15 -3.07 -0.02 3.90 16 6 N -0.60 -15.25 3.40 -169.94 -0.58 -15.83 16 7 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 10 N -0.92 -26.79 10.31 55.49 0.57 -26.22 16 11 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.13 2.74 6.94 -2.41 -0.02 2.73 16 16 C 0.13 2.38 3.16 -65.67 -0.21 2.18 16 17 H 0.11 2.25 7.54 -51.93 -0.39 1.86 16 18 N -0.71 -9.60 5.10 -51.62 -0.26 -9.86 16 19 C 0.52 7.06 7.15 -10.99 -0.08 6.98 16 20 O -0.53 -9.68 15.62 5.56 0.09 -9.59 16 21 C -0.11 -0.99 2.53 -91.77 -0.23 -1.22 16 22 C -0.11 -0.86 4.98 -26.73 -0.13 -1.00 16 23 C -0.16 -1.02 5.45 -26.73 -0.15 -1.17 16 24 C 0.29 2.46 2.10 -26.73 -0.06 2.40 16 25 F -0.20 -2.00 17.06 2.25 0.04 -1.96 16 26 F -0.20 -2.19 16.02 2.25 0.04 -2.15 16 27 C -0.16 -1.14 5.45 -26.73 -0.15 -1.29 16 28 C -0.10 -0.93 4.37 -26.73 -0.12 -1.04 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 32 H 0.06 1.70 7.29 -51.93 -0.38 1.32 16 33 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.40 4.02 7.98 -40.82 -0.33 3.69 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.79 7.80 -51.92 -0.41 0.38 16 40 H 0.08 0.53 7.56 -51.93 -0.39 0.14 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 46 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -33.44 372.58 -7.54 -40.98 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.28 Total: 0.96 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.38 Total: 8.17 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.27 Total: -51.91 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.28 Total: -16.75 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.11 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.44 -7.54 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082174548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.975 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds