Wall clock time and date at job start Tue Mar 31 2020 17:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 H 1.09002 * 110.64007 * 29.30105 * 3 2 1 5 5 C 1.54328 * 110.71910 * 266.15971 * 3 2 1 6 6 N 1.47013 * 107.26868 * 219.44247 * 5 3 2 7 7 C 1.36939 * 125.64997 * 178.90504 * 6 5 3 8 8 H 1.07997 * 120.00335 * 180.02562 * 7 6 5 9 9 C 1.38813 * 119.99580 * 0.02732 * 7 6 5 10 10 N 1.31614 * 120.00203 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99758 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47225 * 0.02562 * 11 9 7 13 13 H 1.48510 * 109.47110 * 119.99865 * 11 9 7 14 14 H 1.48496 * 109.47165 * 239.99610 * 11 9 7 15 15 C 1.47425 * 108.70665 * 358.93918 * 6 5 3 16 16 C 1.55122 * 104.94135 * 24.00534 * 15 6 5 17 17 H 1.09004 * 110.93495 * 81.21164 * 16 15 6 18 18 N 1.46496 * 111.16448 * 205.13129 * 16 15 6 19 19 C 1.34777 * 119.99850 * 267.16699 * 18 16 15 20 20 O 1.21276 * 120.00052 * 0.02562 * 19 18 16 21 21 C 1.50698 * 119.99996 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.47260 * 300.00481 * 21 19 18 23 23 C 1.52999 * 109.47330 * 180.02562 * 22 21 19 24 24 C 1.53005 * 109.47253 * 59.99808 * 23 22 21 25 25 F 1.39901 * 109.47233 * 180.02562 * 24 23 22 26 26 F 1.39898 * 109.47378 * 59.99931 * 24 23 22 27 27 C 1.53003 * 109.46878 * 299.99865 * 24 23 22 28 28 C 1.52998 * 109.46718 * 60.00157 * 27 24 23 29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 32 32 H 1.08997 * 109.88192 * 338.86265 * 5 3 2 33 33 H 1.09002 * 109.88072 * 99.86906 * 5 3 2 34 34 H 0.97003 * 120.00387 * 180.02562 * 10 9 7 35 35 H 1.08999 * 110.36610 * 142.96289 * 15 6 5 36 36 H 1.08998 * 110.36867 * 265.29091 * 15 6 5 37 37 H 0.97000 * 120.00431 * 87.16903 * 18 16 15 38 38 H 1.09000 * 109.47001 * 60.00083 * 21 19 18 39 39 H 1.09007 * 109.47172 * 299.99744 * 22 21 19 40 40 H 1.08999 * 109.47558 * 59.99860 * 22 21 19 41 41 H 1.09000 * 109.46960 * 299.99620 * 23 22 21 42 42 H 1.08999 * 109.47618 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47282 * 300.00156 * 27 24 23 44 44 H 1.08998 * 109.46841 * 179.97438 * 27 24 23 45 45 H 1.08999 * 109.46821 * 179.97438 * 28 27 24 46 46 H 1.09000 * 109.47245 * 59.99976 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3540 2.0183 0.4992 5 6 2.3207 1.7649 -1.4402 6 7 3.6105 2.4696 -1.4051 7 6 4.2517 3.0150 -2.4852 8 1 5.2004 3.5142 -2.3546 9 6 3.6822 2.9260 -3.7480 10 7 2.5263 2.3171 -3.9073 11 14 4.5573 3.6692 -5.2216 12 1 5.8312 4.2909 -4.7791 13 1 4.8458 2.6038 -6.2152 14 1 3.6907 4.7031 -5.8422 15 6 4.0996 2.4914 -0.0145 16 6 3.4089 1.2836 0.6714 17 1 3.9351 0.3555 0.4479 18 7 3.3002 1.4880 2.1179 19 6 4.2625 1.0220 2.9385 20 8 5.2186 0.4340 2.4793 21 6 4.1510 1.2327 4.4265 22 6 4.1029 2.7321 4.7271 23 6 3.9903 2.9461 6.2379 24 6 5.2039 2.3253 6.9328 25 9 5.1007 2.5204 8.3143 26 9 6.3726 2.9330 6.4616 27 6 5.2519 0.8258 6.6322 28 6 5.3645 0.6120 5.1214 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 2.3891 0.8991 -2.0989 33 1 1.5378 2.4369 -1.7918 34 1 2.1285 2.2546 -4.7898 35 1 5.1830 2.3732 0.0084 36 1 3.8080 3.4202 0.4758 37 1 2.5356 1.9585 2.4852 38 1 3.2402 0.7593 4.7932 39 1 5.0136 3.2057 4.3604 40 1 3.2386 3.1745 4.2318 41 1 3.0797 2.4725 6.6050 42 1 3.9565 4.0143 6.4521 43 1 4.3414 0.3523 6.9994 44 1 6.1167 0.3837 7.1269 45 1 5.3992 -0.4562 4.9073 46 1 6.2751 1.0855 4.7543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082174548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:12 Heat of formation + Delta-G solvation = -191.167560 kcal Electronic energy + Delta-G solvation = -29791.388492 eV Core-core repulsion = 25350.986065 eV Total energy + Delta-G solvation = -4440.402427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.92014 -47.92790 -41.33307 -39.86364 -37.99266 -37.45158 -35.63316 -33.73053 -32.09258 -31.48391 -30.36251 -28.75858 -27.52231 -26.16640 -24.52022 -24.08190 -22.35616 -22.07593 -21.57633 -20.77589 -19.15975 -18.42259 -18.20816 -17.90314 -17.67314 -17.23727 -17.15474 -16.53045 -15.98998 -15.91131 -15.80721 -15.32468 -15.11089 -15.02474 -14.84841 -14.47332 -14.41310 -14.26151 -14.10329 -13.89378 -13.61704 -13.38296 -13.25254 -13.10778 -12.97079 -12.79852 -12.75133 -12.64857 -12.52959 -12.29833 -12.17217 -12.04159 -11.88075 -11.70709 -11.60755 -11.09556 -10.87823 -10.78961 -10.53979 -10.06962 -8.97139 -7.88656 -5.26571 1.44872 1.46580 1.56779 1.63867 2.05362 2.45832 2.78475 2.85115 3.15727 3.29342 3.32276 3.45220 3.54488 3.75381 3.79905 3.87881 3.94186 3.98100 4.10151 4.13043 4.33419 4.34902 4.40282 4.46708 4.61239 4.64007 4.66722 4.70275 4.82340 4.84451 4.89691 4.91646 4.96264 5.00098 5.06470 5.18709 5.30884 5.34154 5.38347 5.49025 5.65910 6.13010 6.32956 6.57885 7.04198 7.29441 7.69225 8.31347 9.20834 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017035 B = 0.002788 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.279861 B =10041.659383 C =11044.423031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.099 0.901 5 C 0.173 3.827 6 N -0.622 5.622 7 C -0.246 4.246 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.980 3.020 12 H -0.267 1.267 13 H -0.293 1.293 14 H -0.287 1.287 15 C 0.131 3.869 16 C 0.150 3.850 17 H 0.072 0.928 18 N -0.699 5.699 19 C 0.515 3.485 20 O -0.585 6.585 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.148 4.148 24 C 0.273 3.727 25 F -0.212 7.212 26 F -0.218 7.218 27 C -0.149 4.149 28 C -0.099 4.099 29 H 0.099 0.901 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.015 0.985 33 H 0.022 0.978 34 H 0.249 0.751 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.417 0.583 38 H 0.142 0.858 39 H 0.057 0.943 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 -1.098 24.795 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.117 0.883 5 C 0.047 3.953 6 N -0.350 5.350 7 C -0.375 4.375 8 H 0.100 0.900 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.808 3.192 12 H -0.191 1.191 13 H -0.220 1.220 14 H -0.214 1.214 15 C 0.004 3.996 16 C 0.043 3.957 17 H 0.090 0.910 18 N -0.351 5.351 19 C 0.303 3.697 20 O -0.464 6.464 21 C -0.118 4.118 22 C -0.148 4.148 23 C -0.185 4.185 24 C 0.237 3.763 25 F -0.193 7.193 26 F -0.200 7.200 27 C -0.187 4.187 28 C -0.138 4.138 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.255 0.745 38 H 0.160 0.840 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.169 -1.640 24.299 24.709 hybrid contribution 0.345 0.734 -1.291 1.524 sum -3.824 -0.906 23.009 23.342 Atomic orbital electron populations 1.22987 0.79302 1.03856 1.00803 1.87895 1.21786 1.27076 1.94939 1.23494 0.93563 0.85211 0.95894 0.88314 1.21314 0.87250 0.94555 0.92194 1.44520 1.21492 1.66005 1.02949 1.19480 1.02726 1.29085 0.86206 0.90007 1.25661 0.98180 1.01509 1.00166 1.70162 1.18992 1.48521 1.21996 0.84989 0.77948 0.77281 0.78965 1.19139 1.22020 1.21352 1.21970 0.96810 0.95864 0.84920 1.21800 0.95377 0.98217 0.80300 0.90973 1.45685 1.25686 1.58661 1.05023 1.21293 0.81280 0.76977 0.90117 1.90720 1.33527 1.43458 1.78708 1.21457 1.02775 0.98926 0.88690 1.21536 1.04542 0.93259 0.95470 1.22525 0.96961 1.03917 0.95111 1.21617 0.84138 0.95276 0.75238 1.92989 1.96395 1.96454 1.33426 1.92978 1.52831 1.85726 1.88422 1.22527 1.07126 0.91745 0.97281 1.21267 0.97304 1.02284 0.92895 0.88219 0.94884 0.91382 0.96686 0.95951 0.94210 0.95011 0.93715 0.74470 0.84013 0.92385 0.87348 0.85290 0.88468 0.85633 0.89210 0.90046 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.86 113.37 1.23 1.89 16 2 O -0.40 -13.83 10.43 -148.98 -1.55 -15.39 16 3 C 0.08 2.77 3.06 31.78 0.10 2.86 16 4 H 0.10 2.80 7.71 -2.39 -0.02 2.78 16 5 C 0.17 8.52 5.15 86.73 0.45 8.96 16 6 N -0.62 -32.51 3.40 -691.58 -2.35 -34.86 16 7 C -0.25 -14.08 10.28 84.03 0.86 -13.22 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 9 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 10 N -0.95 -57.04 10.31 21.65 0.22 -56.81 16 11 Si 0.98 46.24 29.55 68.60 2.03 48.27 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 15 C 0.13 5.51 6.94 86.93 0.60 6.12 16 16 C 0.15 5.39 3.16 46.46 0.15 5.53 16 17 H 0.07 3.14 7.54 -2.39 -0.02 3.12 16 18 N -0.70 -17.13 5.10 -435.63 -2.22 -19.35 16 19 C 0.52 13.27 7.15 87.66 0.63 13.89 16 20 O -0.58 -21.56 15.62 -3.02 -0.05 -21.61 16 21 C -0.10 -1.44 2.53 -11.54 -0.03 -1.47 16 22 C -0.11 -1.33 4.98 30.59 0.15 -1.18 16 23 C -0.15 -1.37 5.45 30.60 0.17 -1.20 16 24 C 0.27 4.07 2.10 30.60 0.06 4.13 16 25 F -0.21 -3.64 17.06 44.97 0.77 -2.88 16 26 F -0.22 -4.74 16.02 44.97 0.72 -4.02 16 27 C -0.15 -1.78 5.45 30.59 0.17 -1.62 16 28 C -0.10 -1.70 4.37 30.59 0.13 -1.57 16 29 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.24 8.11 -2.38 -0.02 1.22 16 32 H 0.01 0.86 7.29 -2.39 -0.02 0.85 16 33 H 0.02 1.20 7.51 -2.39 -0.02 1.18 16 34 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.42 6.63 7.98 -92.71 -0.74 5.89 16 38 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.02 7.80 -2.38 -0.02 1.00 16 40 H 0.11 0.83 7.56 -2.39 -0.02 0.81 16 41 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 46 H 0.05 1.23 7.76 -2.39 -0.02 1.21 16 Total: -1.00 -78.70 372.58 2.95 -75.75 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.25 Total: 10.85 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 5.14 Total: 20.05 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -4.35 Total: -111.03 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -1.60 Total: -37.00 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 1.49 Total: -6.90 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -78.70 2.95 -75.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082174548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.419 kcal (2) G-P(sol) polarization free energy of solvation -78.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds