Wall clock time and date at job start Tue Mar 31 2020 16:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00024 * 2 1 4 4 C 1.53003 * 109.46926 * 274.74960 * 3 2 1 5 5 H 1.08999 * 112.73648 * 315.90399 * 4 3 2 6 6 C 1.53500 * 113.46604 * 86.72308 * 4 3 2 7 7 C 1.53500 * 83.34176 * 140.84894 * 6 4 3 8 8 N 1.47058 * 87.98434 * 333.93033 * 7 6 4 9 9 C 1.36941 * 136.05655 * 207.08643 * 8 7 6 10 10 H 1.08003 * 120.00037 * 184.98568 * 9 8 7 11 11 C 1.38815 * 120.00053 * 4.97742 * 9 8 7 12 12 N 1.31616 * 119.99842 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00115 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47242 * 60.00113 * 13 11 9 15 15 H 1.48494 * 109.47191 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47139 * 300.00425 * 13 11 9 17 17 C 1.34780 * 120.00146 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00089 * 184.93288 * 17 2 1 19 19 C 1.50697 * 119.99742 * 4.93600 * 17 2 1 20 20 H 1.09002 * 110.35139 * 324.33062 * 19 17 2 21 21 C 1.54348 * 110.30076 * 202.20550 * 19 17 2 22 22 C 1.54346 * 102.39533 * 214.72498 * 21 19 17 23 23 C 1.51379 * 105.16861 * 26.34959 * 22 21 19 24 24 C 1.38464 * 130.36158 * 162.80296 * 23 22 21 25 25 C 1.38323 * 120.19159 * 180.02562 * 24 23 22 26 26 F 1.35105 * 120.05763 * 179.97438 * 25 24 23 27 27 C 1.38476 * 119.88278 * 359.97438 * 25 24 23 28 28 C 1.38052 * 119.90731 * 359.75110 * 27 25 24 29 29 C 1.38229 * 109.76106 * 342.80915 * 23 22 21 30 30 H 1.09000 * 109.47159 * 264.85547 * 1 2 3 31 31 H 1.09003 * 109.47005 * 24.85974 * 1 2 3 32 32 H 1.08997 * 109.46673 * 144.86027 * 1 2 3 33 33 H 1.08999 * 109.46973 * 34.74756 * 3 2 1 34 34 H 1.09000 * 109.47379 * 154.75326 * 3 2 1 35 35 H 1.09006 * 114.20277 * 254.43130 * 6 4 3 36 36 H 1.09000 * 114.20666 * 27.26002 * 6 4 3 37 37 H 1.09004 * 113.46140 * 219.14856 * 7 6 4 38 38 H 1.08995 * 113.51772 * 88.72398 * 7 6 4 39 39 H 0.97001 * 119.99976 * 179.97438 * 12 11 9 40 40 H 1.08990 * 110.82199 * 332.95100 * 21 19 17 41 41 H 1.09000 * 110.81813 * 96.30319 * 21 19 17 42 42 H 1.08995 * 110.30172 * 145.27177 * 22 21 19 43 43 H 1.09000 * 110.30191 * 267.33490 * 22 21 19 44 44 H 1.07999 * 119.90399 * 0.02562 * 24 23 22 45 45 H 1.08006 * 120.04186 * 179.97438 * 27 25 24 46 46 H 1.08000 * 119.87762 * 180.30222 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3491 1.7701 -1.4376 5 1 2.6369 0.9800 -2.1311 6 6 1.1565 2.6062 -1.9222 7 6 2.2497 3.4509 -2.5913 8 7 3.1772 2.9801 -1.5517 9 6 4.3127 3.4577 -0.9536 10 1 4.8509 2.8425 -0.2476 11 6 4.7722 4.7325 -1.2548 12 7 4.1162 5.4823 -2.1149 13 14 6.3215 5.3837 -0.4395 14 1 7.4669 4.5007 -0.7765 15 1 6.5964 6.7593 -0.9266 16 1 6.1327 5.4091 1.0332 17 6 2.1390 -1.1672 0.0005 18 8 3.3484 -1.1691 0.0908 19 6 1.3896 -2.4699 -0.1112 20 1 0.4391 -2.4071 0.4185 21 6 2.2411 -3.6275 0.4521 22 6 1.8539 -4.8029 -0.4702 23 6 1.4250 -4.1602 -1.7720 24 6 1.2801 -4.7058 -3.0363 25 6 0.8695 -3.9133 -4.0930 26 9 0.7295 -4.4483 -5.3257 27 6 0.6024 -2.5705 -3.8853 28 6 0.7415 -2.0282 -2.6234 29 6 1.1582 -2.8197 -1.5657 30 1 -0.3633 -0.0921 1.0235 31 1 -0.3633 0.9325 -0.4320 32 1 -0.3632 -0.8404 -0.5915 33 1 1.6479 2.0056 0.5857 34 1 3.1842 1.1187 0.4383 35 1 0.5018 2.0871 -2.6222 36 1 0.6185 3.1209 -1.1261 37 1 2.0572 4.5230 -2.5481 38 1 2.5110 3.1098 -3.5930 39 1 4.4370 6.3732 -2.3251 40 1 3.3043 -3.4029 0.3680 41 1 1.9720 -3.8383 1.4871 42 1 2.7129 -5.4534 -0.6346 43 1 1.0294 -5.3684 -0.0363 44 1 1.4881 -5.7532 -3.1979 45 1 0.2821 -1.9492 -4.7086 46 1 0.5283 -0.9820 -2.4609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085727213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:34 Heat of formation + Delta-G solvation = 8.982768 kcal Electronic energy + Delta-G solvation = -28946.304474 eV Core-core repulsion = 24945.350441 eV Total energy + Delta-G solvation = -4000.954033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.06860 -40.96234 -39.17287 -37.96509 -35.61063 -35.13699 -32.20575 -31.85799 -29.09197 -29.01607 -27.93590 -27.65060 -26.10466 -23.44843 -23.18734 -22.85662 -21.47864 -21.09621 -19.24510 -18.84657 -17.39460 -17.25530 -16.79344 -16.74398 -16.19696 -15.87914 -15.68767 -15.17351 -14.78745 -14.63475 -14.19649 -13.91328 -13.78707 -13.49879 -13.15440 -13.13234 -13.00910 -12.73591 -12.67541 -12.39117 -12.12152 -11.85822 -11.79433 -11.67034 -11.48763 -11.13332 -11.10652 -10.92888 -10.85623 -10.73024 -10.44164 -9.87772 -9.78659 -9.73790 -9.44973 -9.16049 -8.75178 -8.63492 -8.30472 -6.84631 -5.72510 -3.06139 0.87903 0.99142 2.70550 3.10574 3.35264 3.43254 3.47175 3.48828 3.83906 4.16801 4.28089 4.48911 4.56066 4.68092 4.70025 4.89521 4.93804 5.04036 5.11285 5.22007 5.25833 5.32374 5.38440 5.45597 5.49233 5.53095 5.59423 5.68260 5.73360 5.78985 5.84318 5.89811 5.96881 6.03109 6.06465 6.18152 6.26866 6.31073 6.44730 6.53474 6.64768 6.68857 6.86185 7.25440 7.44232 7.55220 7.61306 8.03091 8.32867 9.08023 9.74535 10.67478 11.43997 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.003197 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.335961 B = 8755.438003 C = 9417.477125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.609 5.609 3 C 0.113 3.887 4 C 0.135 3.865 5 H 0.041 0.959 6 C -0.167 4.167 7 C 0.148 3.852 8 N -0.599 5.599 9 C -0.216 4.216 10 H 0.079 0.921 11 C -0.006 4.006 12 N -0.920 5.920 13 Si 0.911 3.089 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.518 3.482 18 O -0.529 6.529 19 C -0.068 4.068 20 H 0.108 0.892 21 C -0.109 4.109 22 C -0.080 4.080 23 C -0.060 4.060 24 C -0.144 4.144 25 C 0.101 3.899 26 F -0.140 7.140 27 C -0.150 4.150 28 C -0.070 4.070 29 C -0.095 4.095 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.020 0.980 39 H 0.253 0.747 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.134 0.866 45 H 0.140 0.860 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.471 -20.118 2.408 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.342 5.342 3 C -0.010 4.010 4 C 0.026 3.974 5 H 0.059 0.941 6 C -0.206 4.206 7 C 0.023 3.977 8 N -0.325 5.325 9 C -0.343 4.343 10 H 0.097 0.903 11 C -0.203 4.203 12 N -0.567 5.567 13 Si 0.742 3.258 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.304 3.696 18 O -0.404 6.404 19 C -0.090 4.090 20 H 0.125 0.875 21 C -0.147 4.147 22 C -0.117 4.117 23 C -0.060 4.060 24 C -0.163 4.163 25 C 0.082 3.918 26 F -0.118 7.118 27 C -0.169 4.169 28 C -0.088 4.088 29 C -0.096 4.096 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.542 -19.842 2.486 23.605 hybrid contribution 0.762 0.374 -0.144 0.861 sum -11.780 -19.468 2.342 22.875 Atomic orbital electron populations 1.21905 0.80071 1.03601 1.01582 1.47886 1.06747 1.06476 1.73085 1.21925 0.97652 0.82364 0.99095 1.22418 0.90363 0.91068 0.93523 0.94147 1.23747 0.96227 0.99957 1.00619 1.22084 0.85509 0.99462 0.90694 1.45620 1.28643 1.16628 1.41587 1.18888 0.99616 0.96950 1.18886 0.90291 1.24767 0.99362 0.96519 0.99634 1.69814 1.40311 1.09971 1.36651 0.86209 0.82838 0.77906 0.78895 1.21162 1.21581 1.21026 1.20305 0.87934 0.84927 0.76391 1.90713 1.14042 1.86822 1.48871 1.20879 1.00444 0.94256 0.93374 0.87451 1.22350 1.01915 0.91696 0.98747 1.21089 1.01619 0.97991 0.91024 1.20349 0.97172 0.94372 0.94156 1.20488 1.03976 1.00625 0.91229 1.17519 1.02055 0.92208 0.80022 1.91503 1.93513 1.86559 1.40237 1.21051 1.03711 0.93603 0.98496 1.20628 0.97160 1.00146 0.90869 1.20166 1.00968 0.94369 0.94100 0.92662 0.90081 0.91453 0.90462 0.89611 0.92936 0.90477 0.90535 0.96198 0.93690 0.88593 0.89922 0.89950 0.89589 0.84828 0.84253 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 9.39 59.85 0.56 1.24 16 2 N -0.61 -8.54 2.87 -181.57 -0.52 -9.07 16 3 C 0.11 2.03 5.42 -4.04 -0.02 2.01 16 4 C 0.13 2.75 4.31 -72.39 -0.31 2.44 16 5 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.17 -3.01 7.18 -26.21 -0.19 -3.20 16 7 C 0.15 3.50 7.52 -8.51 -0.06 3.43 16 8 N -0.60 -15.47 3.65 -177.00 -0.65 -16.12 16 9 C -0.22 -6.17 10.55 -15.06 -0.16 -6.32 16 10 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 12 N -0.92 -27.57 11.43 55.49 0.63 -26.93 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.52 7.76 6.67 -10.99 -0.07 7.69 16 18 O -0.53 -10.37 15.09 5.55 0.08 -10.29 16 19 C -0.07 -0.74 2.33 -91.88 -0.21 -0.95 16 20 H 0.11 0.87 6.89 -51.93 -0.36 0.51 16 21 C -0.11 -1.06 6.50 -25.32 -0.16 -1.22 16 22 C -0.08 -0.64 6.77 -26.84 -0.18 -0.82 16 23 C -0.06 -0.62 6.14 -104.21 -0.64 -1.26 16 24 C -0.14 -1.47 10.02 -39.47 -0.40 -1.86 16 25 C 0.10 1.14 7.30 -39.46 -0.29 0.85 16 26 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 27 C -0.15 -1.65 10.03 -39.56 -0.40 -2.04 16 28 C -0.07 -0.79 9.09 -39.55 -0.36 -1.15 16 29 C -0.10 -1.07 5.36 -104.19 -0.56 -1.63 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.75 7.17 -51.93 -0.37 0.38 16 32 H 0.07 0.53 5.05 -51.93 -0.26 0.26 16 33 H 0.08 1.33 7.84 -51.93 -0.41 0.92 16 34 H 0.09 1.82 7.23 -51.93 -0.38 1.45 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.33 7.94 -51.93 -0.41 0.92 16 37 H 0.08 1.99 6.92 -51.93 -0.36 1.63 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 40 H 0.10 1.18 6.90 -51.93 -0.36 0.82 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 46 H 0.14 1.48 6.85 -52.49 -0.36 1.12 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -34.05 373.31 -9.97 -44.02 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.62 Total: -0.18 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.55 Total: -3.08 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.53 Total: -52.12 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.05 -9.97 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085727213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.005 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds