Wall clock time and date at job start Tue Mar 31 2020 16:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00024 * 2 1 4 4 C 1.53003 * 109.46926 * 274.74960 * 3 2 1 5 5 H 1.08999 * 112.73648 * 315.90399 * 4 3 2 6 6 C 1.53500 * 113.46604 * 86.72308 * 4 3 2 7 7 C 1.53500 * 83.34176 * 140.84894 * 6 4 3 8 8 N 1.47058 * 87.98434 * 333.93033 * 7 6 4 9 9 C 1.36941 * 136.05655 * 207.08643 * 8 7 6 10 10 H 1.08003 * 120.00037 * 184.98568 * 9 8 7 11 11 C 1.38815 * 120.00053 * 4.97742 * 9 8 7 12 12 N 1.31616 * 119.99842 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00115 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47242 * 60.00113 * 13 11 9 15 15 H 1.48494 * 109.47191 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47139 * 300.00425 * 13 11 9 17 17 C 1.34780 * 120.00146 * 179.97438 * 2 1 3 18 18 O 1.21285 * 120.00089 * 184.93288 * 17 2 1 19 19 C 1.50697 * 119.99742 * 4.93600 * 17 2 1 20 20 H 1.09002 * 110.35139 * 324.33062 * 19 17 2 21 21 C 1.54348 * 110.30076 * 202.20550 * 19 17 2 22 22 C 1.54346 * 102.39533 * 214.72498 * 21 19 17 23 23 C 1.51379 * 105.16861 * 26.34959 * 22 21 19 24 24 C 1.38464 * 130.36158 * 162.80296 * 23 22 21 25 25 C 1.38323 * 120.19159 * 180.02562 * 24 23 22 26 26 F 1.35105 * 120.05763 * 179.97438 * 25 24 23 27 27 C 1.38476 * 119.88278 * 359.97438 * 25 24 23 28 28 C 1.38052 * 119.90731 * 359.75110 * 27 25 24 29 29 C 1.38229 * 109.76106 * 342.80915 * 23 22 21 30 30 H 1.09000 * 109.47159 * 264.85547 * 1 2 3 31 31 H 1.09003 * 109.47005 * 24.85974 * 1 2 3 32 32 H 1.08997 * 109.46673 * 144.86027 * 1 2 3 33 33 H 1.08999 * 109.46973 * 34.74756 * 3 2 1 34 34 H 1.09000 * 109.47379 * 154.75326 * 3 2 1 35 35 H 1.09006 * 114.20277 * 254.43130 * 6 4 3 36 36 H 1.09000 * 114.20666 * 27.26002 * 6 4 3 37 37 H 1.09004 * 113.46140 * 219.14856 * 7 6 4 38 38 H 1.08995 * 113.51772 * 88.72398 * 7 6 4 39 39 H 0.97001 * 119.99976 * 179.97438 * 12 11 9 40 40 H 1.08990 * 110.82199 * 332.95100 * 21 19 17 41 41 H 1.09000 * 110.81813 * 96.30319 * 21 19 17 42 42 H 1.08995 * 110.30172 * 145.27177 * 22 21 19 43 43 H 1.09000 * 110.30191 * 267.33490 * 22 21 19 44 44 H 1.07999 * 119.90399 * 0.02562 * 24 23 22 45 45 H 1.08006 * 120.04186 * 179.97438 * 27 25 24 46 46 H 1.08000 * 119.87762 * 180.30222 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3491 1.7701 -1.4376 5 1 2.6369 0.9800 -2.1311 6 6 1.1565 2.6062 -1.9222 7 6 2.2497 3.4509 -2.5913 8 7 3.1772 2.9801 -1.5517 9 6 4.3127 3.4577 -0.9536 10 1 4.8509 2.8425 -0.2476 11 6 4.7722 4.7325 -1.2548 12 7 4.1162 5.4823 -2.1149 13 14 6.3215 5.3837 -0.4395 14 1 7.4669 4.5007 -0.7765 15 1 6.5964 6.7593 -0.9266 16 1 6.1327 5.4091 1.0332 17 6 2.1390 -1.1672 0.0005 18 8 3.3484 -1.1691 0.0908 19 6 1.3896 -2.4699 -0.1112 20 1 0.4391 -2.4071 0.4185 21 6 2.2411 -3.6275 0.4521 22 6 1.8539 -4.8029 -0.4702 23 6 1.4250 -4.1602 -1.7720 24 6 1.2801 -4.7058 -3.0363 25 6 0.8695 -3.9133 -4.0930 26 9 0.7295 -4.4483 -5.3257 27 6 0.6024 -2.5705 -3.8853 28 6 0.7415 -2.0282 -2.6234 29 6 1.1582 -2.8197 -1.5657 30 1 -0.3633 -0.0921 1.0235 31 1 -0.3633 0.9325 -0.4320 32 1 -0.3632 -0.8404 -0.5915 33 1 1.6479 2.0056 0.5857 34 1 3.1842 1.1187 0.4383 35 1 0.5018 2.0871 -2.6222 36 1 0.6185 3.1209 -1.1261 37 1 2.0572 4.5230 -2.5481 38 1 2.5110 3.1098 -3.5930 39 1 4.4370 6.3732 -2.3251 40 1 3.3043 -3.4029 0.3680 41 1 1.9720 -3.8383 1.4871 42 1 2.7129 -5.4534 -0.6346 43 1 1.0294 -5.3684 -0.0363 44 1 1.4881 -5.7532 -3.1979 45 1 0.2821 -1.9492 -4.7086 46 1 0.5283 -0.9820 -2.4609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085727213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:33 Heat of formation + Delta-G solvation = -10.625214 kcal Electronic energy + Delta-G solvation = -28947.154740 eV Core-core repulsion = 24945.350441 eV Total energy + Delta-G solvation = -4001.804299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.93320 -41.90895 -40.39586 -39.50512 -36.62369 -36.19313 -34.28966 -32.74050 -30.30967 -29.91978 -29.80809 -28.59037 -27.16308 -25.43077 -24.24980 -23.97526 -22.41867 -22.05666 -21.04008 -19.92338 -18.76462 -18.33695 -18.12744 -17.65598 -17.27540 -16.99960 -16.79769 -16.61017 -16.06993 -15.93170 -15.53794 -15.09341 -15.06161 -14.62413 -14.43245 -14.10787 -13.96130 -13.91197 -13.66495 -13.54384 -13.41243 -13.14405 -12.95361 -12.83650 -12.63819 -12.61160 -12.55286 -12.41787 -12.25157 -11.89313 -11.80474 -11.68487 -11.62087 -11.26517 -10.89562 -10.83167 -9.94170 -9.59225 -9.46736 -8.91723 -7.91506 -5.25913 0.04858 0.20403 1.41841 1.45208 1.51385 1.57555 1.99898 2.46007 2.52551 3.05969 3.28089 3.34229 3.47001 3.49709 3.63561 3.83451 3.92351 3.95217 4.13344 4.19413 4.23492 4.27573 4.34499 4.37904 4.53560 4.61233 4.62488 4.69591 4.75007 4.82056 4.88047 4.93481 4.96352 5.00481 5.05135 5.09112 5.09760 5.12828 5.22985 5.25307 5.31538 5.47316 5.47953 5.54904 5.75624 5.85428 5.95818 6.44336 6.90832 7.18581 7.59084 8.60036 9.24443 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.003197 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.335961 B = 8755.438003 C = 9417.477125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.604 5.604 3 C 0.128 3.872 4 C 0.137 3.863 5 H 0.025 0.975 6 C -0.125 4.125 7 C 0.137 3.863 8 N -0.631 5.631 9 C -0.227 4.227 10 H 0.071 0.929 11 C -0.061 4.061 12 N -0.949 5.949 13 Si 0.974 3.026 14 H -0.285 1.285 15 H -0.289 1.289 16 H -0.273 1.273 17 C 0.511 3.489 18 O -0.586 6.586 19 C -0.058 4.058 20 H 0.143 0.857 21 C -0.111 4.111 22 C -0.073 4.073 23 C -0.064 4.064 24 C -0.145 4.145 25 C 0.086 3.914 26 F -0.146 7.146 27 C -0.159 4.159 28 C -0.080 4.080 29 C -0.109 4.109 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.009 0.991 39 H 0.249 0.751 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 -22.007 3.593 27.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.336 5.336 3 C 0.004 3.996 4 C 0.029 3.971 5 H 0.042 0.958 6 C -0.163 4.163 7 C 0.012 3.988 8 N -0.357 5.357 9 C -0.356 4.356 10 H 0.089 0.911 11 C -0.254 4.254 12 N -0.598 5.598 13 Si 0.802 3.198 14 H -0.211 1.211 15 H -0.215 1.215 16 H -0.199 1.199 17 C 0.300 3.700 18 O -0.466 6.466 19 C -0.079 4.079 20 H 0.161 0.839 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.064 4.064 24 C -0.164 4.164 25 C 0.067 3.933 26 F -0.124 7.124 27 C -0.177 4.177 28 C -0.098 4.098 29 C -0.110 4.110 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.135 0.865 44 H 0.171 0.829 45 H 0.167 0.833 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.866 -21.765 3.678 26.613 hybrid contribution 1.462 0.903 -0.558 1.807 sum -13.405 -20.862 3.120 24.992 Atomic orbital electron populations 1.22247 0.76672 1.05023 1.03838 1.47925 1.08626 1.04755 1.72303 1.21452 0.96568 0.84579 0.97034 1.22476 0.90319 0.89511 0.94771 0.95766 1.23506 0.94800 0.97401 1.00605 1.22142 0.87716 0.98652 0.90338 1.46022 1.28545 1.18944 1.42172 1.19134 1.00629 0.97130 1.18662 0.91075 1.25549 1.02420 0.96860 1.00616 1.69990 1.41719 1.09967 1.38077 0.85227 0.79210 0.76966 0.78408 1.21103 1.21467 1.19887 1.21145 0.87512 0.86382 0.74954 1.90692 1.16799 1.87729 1.51406 1.20954 1.01454 0.91729 0.93764 0.83904 1.22380 0.99782 0.91969 1.00733 1.21143 1.03002 0.97394 0.89396 1.20652 0.96453 0.94275 0.95006 1.20721 1.03215 1.01578 0.90890 1.17735 1.02783 0.92618 0.80164 1.91485 1.93649 1.86636 1.40666 1.21214 1.03823 0.93843 0.98864 1.20714 0.97663 1.00327 0.91089 1.20333 1.01391 0.95015 0.94262 0.90098 0.89347 0.89284 0.89323 0.93711 0.88639 0.88877 0.93459 0.97369 0.94204 0.91964 0.87305 0.89144 0.86457 0.82875 0.83336 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 9.39 127.77 1.20 2.16 16 2 N -0.60 -16.01 2.87 -846.74 -2.43 -18.44 16 3 C 0.13 4.60 5.42 86.38 0.47 5.06 16 4 C 0.14 5.57 4.31 41.79 0.18 5.75 16 5 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 6 C -0.13 -4.27 7.18 30.93 0.22 -4.05 16 7 C 0.14 6.57 7.52 83.18 0.63 7.19 16 8 N -0.63 -33.38 3.65 -713.91 -2.60 -35.98 16 9 C -0.23 -13.38 10.55 84.03 0.89 -12.49 16 10 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 11 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 12 N -0.95 -58.42 11.43 21.65 0.25 -58.17 16 13 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 14 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 15 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 17 C 0.51 14.95 6.67 87.66 0.58 15.53 16 18 O -0.59 -23.80 15.09 -3.04 -0.05 -23.84 16 19 C -0.06 -1.11 2.33 -11.61 -0.03 -1.14 16 20 H 0.14 1.67 6.89 -2.39 -0.02 1.66 16 21 C -0.11 -1.90 6.50 31.51 0.20 -1.69 16 22 C -0.07 -0.93 6.77 30.52 0.21 -0.72 16 23 C -0.06 -1.15 6.14 -19.60 -0.12 -1.27 16 24 C -0.15 -2.67 10.02 22.34 0.22 -2.44 16 25 C 0.09 1.83 7.30 22.35 0.16 1.99 16 26 F -0.15 -3.28 17.27 44.97 0.78 -2.50 16 27 C -0.16 -3.30 10.03 22.28 0.22 -3.08 16 28 C -0.08 -1.67 9.09 22.29 0.20 -1.47 16 29 C -0.11 -2.22 5.36 -19.58 -0.10 -2.33 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 1.26 7.17 -2.39 -0.02 1.24 16 32 H 0.09 1.01 5.05 -2.39 -0.01 1.00 16 33 H 0.09 2.95 7.84 -2.39 -0.02 2.93 16 34 H 0.04 1.98 7.23 -2.39 -0.02 1.96 16 35 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.09 2.93 7.94 -2.39 -0.02 2.91 16 37 H 0.05 2.53 6.92 -2.38 -0.02 2.51 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.06 1.52 6.90 -2.39 -0.02 1.51 16 41 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 45 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 46 H 0.14 2.71 6.85 -2.91 -0.02 2.69 16 Total: -1.00 -79.06 373.31 4.57 -74.50 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.99 Total: 10.98 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.61 Total: 3.87 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -4.79 Total: -112.59 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.50 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -79.06 4.57 -74.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085727213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.872 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds