Wall clock time and date at job start Tue Mar 31 2020 16:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99941 * 2 1 4 4 C 1.52996 * 109.47136 * 262.67564 * 3 2 1 5 5 H 1.09005 * 112.77947 * 303.80416 * 4 3 2 6 6 C 1.53243 * 113.38443 * 173.09631 * 4 3 2 7 7 C 1.53498 * 83.42759 * 219.29021 * 6 4 3 8 8 N 1.47062 * 87.98686 * 25.89960 * 7 6 4 9 9 C 1.36934 * 136.05855 * 152.84346 * 8 7 6 10 10 H 1.08003 * 119.99852 * 217.56554 * 9 8 7 11 11 C 1.38810 * 120.00135 * 37.56272 * 9 8 7 12 12 N 1.31615 * 120.00281 * 179.29460 * 11 9 8 13 13 Si 1.86799 * 119.99949 * 359.29850 * 11 9 8 14 14 H 1.48500 * 109.47185 * 273.01486 * 13 11 9 15 15 H 1.48501 * 109.47235 * 33.01460 * 13 11 9 16 16 H 1.48498 * 109.47365 * 153.01523 * 13 11 9 17 17 C 1.34777 * 119.99989 * 179.97438 * 2 1 3 18 18 O 1.21283 * 120.00078 * 185.09565 * 17 2 1 19 19 C 1.50696 * 120.00081 * 5.09492 * 17 2 1 20 20 H 1.09006 * 110.26798 * 31.98345 * 19 17 2 21 21 C 1.54341 * 110.30588 * 269.90829 * 19 17 2 22 22 C 1.54602 * 102.27042 * 267.40065 * 21 19 17 23 23 C 1.51379 * 105.18827 * 333.63143 * 22 21 19 24 24 C 1.38464 * 130.36303 * 197.23192 * 23 22 21 25 25 C 1.38322 * 120.19173 * 180.02562 * 24 23 22 26 26 F 1.35104 * 120.06050 * 179.97438 * 25 24 23 27 27 C 1.38475 * 119.88361 * 359.97438 * 25 24 23 28 28 C 1.38066 * 119.90619 * 0.02562 * 27 25 24 29 29 C 1.38223 * 109.75752 * 17.21121 * 23 22 21 30 30 H 1.09002 * 109.46821 * 92.28516 * 1 2 3 31 31 H 1.09000 * 109.47425 * 212.28412 * 1 2 3 32 32 H 1.09000 * 109.47479 * 332.28862 * 1 2 3 33 33 H 1.09003 * 109.46957 * 142.67325 * 3 2 1 34 34 H 1.08997 * 109.47182 * 22.67793 * 3 2 1 35 35 H 1.09003 * 114.32070 * 105.65509 * 6 4 3 36 36 H 1.08998 * 114.19396 * 332.91894 * 6 4 3 37 37 H 1.08997 * 113.46737 * 271.11327 * 7 6 4 38 38 H 1.09002 * 113.51772 * 140.68673 * 7 6 4 39 39 H 0.97000 * 120.00149 * 180.02562 * 12 11 9 40 40 H 1.09000 * 110.82192 * 25.65318 * 21 19 17 41 41 H 1.08996 * 110.81912 * 149.20758 * 21 19 17 42 42 H 1.09003 * 110.28520 * 214.71021 * 22 21 19 43 43 H 1.09000 * 110.30747 * 92.56845 * 22 21 19 44 44 H 1.07995 * 119.90344 * 359.97438 * 24 23 22 45 45 H 1.08000 * 120.04739 * 180.02562 * 27 25 24 46 46 H 1.08005 * 119.87370 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6117 1.6185 -1.4307 5 1 3.2003 0.8324 -1.9038 6 6 3.2380 3.0111 -1.5593 7 6 2.4319 3.0598 -2.8647 8 7 1.4974 2.0969 -2.2627 9 6 0.1717 1.7865 -2.4085 10 1 -0.4187 1.5202 -1.5442 11 6 -0.4134 1.8142 -3.6669 12 7 -1.6841 1.5023 -3.8089 13 14 0.6029 2.2938 -5.1590 14 1 0.5811 3.7700 -5.3191 15 1 2.0035 1.8370 -4.9717 16 1 0.0323 1.6559 -6.3725 17 6 2.1389 -1.1672 0.0005 18 8 3.3481 -1.1693 0.0938 19 6 1.3899 -2.4698 -0.1148 20 1 0.4942 -2.3378 -0.7219 21 6 1.0143 -2.9975 1.2861 22 6 2.2088 -3.9202 1.6207 23 6 2.7505 -4.3695 0.2804 24 6 3.5883 -5.4242 -0.0402 25 6 3.9562 -5.6453 -1.3552 26 9 4.7743 -6.6750 -1.6650 27 6 3.4847 -4.8095 -2.3535 28 6 2.6493 -3.7579 -2.0333 29 6 2.2800 -3.5360 -0.7168 30 1 -0.3633 -0.0410 -1.0269 31 1 -0.3634 -0.8688 0.5489 32 1 -0.3634 0.9098 0.4779 33 1 3.0869 1.1748 0.6232 34 1 1.5580 2.0575 0.3962 35 1 4.3187 3.0060 -1.7013 36 1 2.9063 3.7218 -0.8024 37 1 2.9721 2.6616 -3.7236 38 1 1.9839 4.0334 -3.0632 39 1 -2.0929 1.5213 -4.6884 40 1 0.9428 -2.1788 2.0022 41 1 0.0842 -3.5646 1.2500 42 1 1.8716 -4.7800 2.1997 43 1 2.9708 -3.3682 2.1708 44 1 3.9562 -6.0756 0.7386 45 1 3.7700 -4.9800 -3.3811 46 1 2.2815 -3.1066 -2.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085727214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:39 Heat of formation + Delta-G solvation = 16.671005 kcal Electronic energy + Delta-G solvation = -29357.630288 eV Core-core repulsion = 25357.009642 eV Total energy + Delta-G solvation = -4000.620646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.90931 -40.75137 -39.10166 -38.00604 -35.30363 -34.90904 -32.45451 -31.61262 -29.36388 -28.81955 -28.35455 -27.24176 -25.94492 -23.28681 -23.15683 -22.93096 -21.28498 -21.17964 -19.45016 -18.70639 -17.21268 -17.01470 -16.79556 -16.40157 -16.08586 -15.60933 -15.50492 -15.13653 -15.05955 -14.40124 -14.25947 -13.83420 -13.64709 -13.56298 -13.05323 -12.96759 -12.89033 -12.55163 -12.31659 -12.17643 -12.07374 -11.95098 -11.80990 -11.64443 -11.41455 -11.29796 -11.18705 -11.02577 -10.83923 -10.68715 -10.40578 -9.97672 -9.93151 -9.51600 -9.37892 -8.93518 -8.65244 -8.41525 -8.04780 -6.84999 -6.03128 -3.50627 1.12374 1.22826 2.94469 3.30620 3.35214 3.40253 3.42880 3.66807 4.03948 4.34215 4.47133 4.47733 4.77287 4.82194 4.86893 4.92791 5.05489 5.19858 5.20150 5.21875 5.36446 5.51886 5.55847 5.62070 5.65761 5.71192 5.72279 5.82906 5.88641 5.97111 5.99147 6.04302 6.05823 6.11078 6.11466 6.25598 6.26331 6.38114 6.46633 6.52752 6.54656 6.61306 6.87595 6.92382 7.12161 7.53370 7.84400 8.26502 8.57124 8.60947 9.56886 10.42819 11.11605 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.003804 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.104836 B = 7359.796944 C = 7906.280173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.594 5.594 3 C 0.122 3.878 4 C 0.124 3.876 5 H 0.049 0.951 6 C -0.151 4.151 7 C 0.093 3.907 8 N -0.615 5.615 9 C -0.235 4.235 10 H 0.104 0.896 11 C 0.030 3.970 12 N -0.913 5.913 13 Si 0.883 3.117 14 H -0.285 1.285 15 H -0.263 1.263 16 H -0.300 1.300 17 C 0.524 3.476 18 O -0.545 6.545 19 C -0.073 4.073 20 H 0.108 0.892 21 C -0.105 4.105 22 C -0.080 4.080 23 C -0.055 4.055 24 C -0.146 4.146 25 C 0.097 3.903 26 F -0.143 7.143 27 C -0.154 4.154 28 C -0.065 4.065 29 C -0.077 4.077 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.264 0.736 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -9.661 10.129 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.325 5.325 3 C -0.001 4.001 4 C 0.017 3.983 5 H 0.066 0.934 6 C -0.190 4.190 7 C -0.032 4.032 8 N -0.343 5.343 9 C -0.362 4.362 10 H 0.121 0.879 11 C -0.170 4.170 12 N -0.556 5.556 13 Si 0.713 3.287 14 H -0.212 1.212 15 H -0.188 1.188 16 H -0.227 1.227 17 C 0.311 3.689 18 O -0.422 6.422 19 C -0.095 4.095 20 H 0.126 0.874 21 C -0.143 4.143 22 C -0.116 4.116 23 C -0.055 4.055 24 C -0.165 4.165 25 C 0.078 3.922 26 F -0.121 7.121 27 C -0.173 4.173 28 C -0.083 4.083 29 C -0.078 4.078 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.285 -9.755 10.025 15.335 hybrid contribution 0.527 0.178 -1.407 1.512 sum 6.812 -9.577 8.618 14.574 Atomic orbital electron populations 1.22264 0.78876 1.01425 1.04734 1.47634 1.07456 1.05546 1.71847 1.21798 0.96234 0.84184 0.97888 1.22528 0.89707 0.94213 0.91844 0.93396 1.23425 0.98130 0.98064 0.99392 1.22765 0.91387 0.94310 0.94752 1.45930 1.03835 1.37512 1.47024 1.18829 0.80954 1.42763 0.93648 0.87888 1.25454 0.96107 0.97856 0.97587 1.69716 1.11375 1.50772 1.23736 0.86796 0.81027 0.78207 0.82627 1.21203 1.18810 1.22714 1.20104 0.87607 0.84642 0.76523 1.90657 1.14037 1.87341 1.50207 1.20829 0.98608 0.91769 0.98256 0.87383 1.22301 0.98437 0.99223 0.94355 1.21111 0.97503 0.99262 0.93763 1.20304 0.95327 0.93671 0.96228 1.20415 1.01286 0.99982 0.94842 1.17468 0.93677 0.87438 0.93662 1.91480 1.70299 1.56602 1.93769 1.20973 1.00582 0.96421 0.99302 1.20546 0.95750 0.96174 0.95810 1.20074 0.98690 0.95765 0.93234 0.88653 0.92735 0.91172 0.91055 0.90298 0.92086 0.90025 0.94076 0.93471 0.92658 0.89939 0.89587 0.90224 0.89477 0.85114 0.84632 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 7.92 59.85 0.47 1.55 16 2 N -0.59 -9.98 2.89 -181.58 -0.53 -10.50 16 3 C 0.12 2.10 5.26 -4.04 -0.02 2.08 16 4 C 0.12 2.43 4.25 -72.53 -0.31 2.12 16 5 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.15 -2.57 8.01 -26.35 -0.21 -2.78 16 7 C 0.09 1.92 5.81 -8.51 -0.05 1.87 16 8 N -0.61 -14.01 3.18 -177.16 -0.56 -14.57 16 9 C -0.24 -6.02 9.71 -15.06 -0.15 -6.16 16 10 H 0.10 2.62 4.71 -52.48 -0.25 2.38 16 11 C 0.03 0.83 5.50 -17.43 -0.10 0.73 16 12 N -0.91 -26.27 13.97 55.49 0.78 -25.49 16 13 Si 0.88 21.98 26.08 -169.99 -4.43 17.55 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.26 -6.44 5.46 56.52 0.31 -6.13 16 16 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 17 C 0.52 8.89 6.61 -10.99 -0.07 8.82 16 18 O -0.54 -10.82 16.00 5.55 0.09 -10.73 16 19 C -0.07 -1.02 2.32 -91.89 -0.21 -1.23 16 20 H 0.11 1.48 7.07 -51.93 -0.37 1.11 16 21 C -0.11 -1.11 5.93 -25.19 -0.15 -1.25 16 22 C -0.08 -0.84 6.76 -26.71 -0.18 -1.02 16 23 C -0.06 -0.72 6.14 -104.21 -0.64 -1.36 16 24 C -0.15 -1.83 10.02 -39.47 -0.40 -2.23 16 25 C 0.10 1.29 7.30 -39.46 -0.29 1.00 16 26 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 27 C -0.15 -2.05 10.03 -39.56 -0.40 -2.45 16 28 C -0.06 -0.94 10.04 -39.54 -0.40 -1.33 16 29 C -0.08 -1.12 4.88 -104.19 -0.51 -1.63 16 30 H 0.10 1.83 5.80 -51.93 -0.30 1.53 16 31 H 0.05 0.67 6.32 -51.93 -0.33 0.34 16 32 H 0.07 1.06 7.63 -51.93 -0.40 0.66 16 33 H 0.07 1.18 7.58 -51.93 -0.39 0.79 16 34 H 0.08 1.31 7.79 -51.93 -0.40 0.90 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 37 H 0.04 0.89 6.20 -51.93 -0.32 0.57 16 38 H 0.05 0.98 7.95 -51.93 -0.41 0.56 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.08 0.82 7.83 -51.93 -0.41 0.42 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 46 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -31.23 365.75 -9.32 -40.54 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.61 Total: 2.82 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -3.60 Total: -3.27 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.31 Total: -50.57 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.43 Total: 17.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.23 -9.32 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085727214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.212 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds