Wall clock time and date at job start Tue Mar 31 2020 16:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99941 * 2 1 4 4 C 1.52996 * 109.47136 * 262.67564 * 3 2 1 5 5 H 1.09005 * 112.77947 * 303.80416 * 4 3 2 6 6 C 1.53243 * 113.38443 * 173.09631 * 4 3 2 7 7 C 1.53498 * 83.42759 * 219.29021 * 6 4 3 8 8 N 1.47062 * 87.98686 * 25.89960 * 7 6 4 9 9 C 1.36934 * 136.05855 * 152.84346 * 8 7 6 10 10 H 1.08003 * 119.99852 * 217.56554 * 9 8 7 11 11 C 1.38810 * 120.00135 * 37.56272 * 9 8 7 12 12 N 1.31615 * 120.00281 * 179.29460 * 11 9 8 13 13 Si 1.86799 * 119.99949 * 359.29850 * 11 9 8 14 14 H 1.48500 * 109.47185 * 273.01486 * 13 11 9 15 15 H 1.48501 * 109.47235 * 33.01460 * 13 11 9 16 16 H 1.48498 * 109.47365 * 153.01523 * 13 11 9 17 17 C 1.34777 * 119.99989 * 179.97438 * 2 1 3 18 18 O 1.21283 * 120.00078 * 185.09565 * 17 2 1 19 19 C 1.50696 * 120.00081 * 5.09492 * 17 2 1 20 20 H 1.09006 * 110.26798 * 31.98345 * 19 17 2 21 21 C 1.54341 * 110.30588 * 269.90829 * 19 17 2 22 22 C 1.54602 * 102.27042 * 267.40065 * 21 19 17 23 23 C 1.51379 * 105.18827 * 333.63143 * 22 21 19 24 24 C 1.38464 * 130.36303 * 197.23192 * 23 22 21 25 25 C 1.38322 * 120.19173 * 180.02562 * 24 23 22 26 26 F 1.35104 * 120.06050 * 179.97438 * 25 24 23 27 27 C 1.38475 * 119.88361 * 359.97438 * 25 24 23 28 28 C 1.38066 * 119.90619 * 0.02562 * 27 25 24 29 29 C 1.38223 * 109.75752 * 17.21121 * 23 22 21 30 30 H 1.09002 * 109.46821 * 92.28516 * 1 2 3 31 31 H 1.09000 * 109.47425 * 212.28412 * 1 2 3 32 32 H 1.09000 * 109.47479 * 332.28862 * 1 2 3 33 33 H 1.09003 * 109.46957 * 142.67325 * 3 2 1 34 34 H 1.08997 * 109.47182 * 22.67793 * 3 2 1 35 35 H 1.09003 * 114.32070 * 105.65509 * 6 4 3 36 36 H 1.08998 * 114.19396 * 332.91894 * 6 4 3 37 37 H 1.08997 * 113.46737 * 271.11327 * 7 6 4 38 38 H 1.09002 * 113.51772 * 140.68673 * 7 6 4 39 39 H 0.97000 * 120.00149 * 180.02562 * 12 11 9 40 40 H 1.09000 * 110.82192 * 25.65318 * 21 19 17 41 41 H 1.08996 * 110.81912 * 149.20758 * 21 19 17 42 42 H 1.09003 * 110.28520 * 214.71021 * 22 21 19 43 43 H 1.09000 * 110.30747 * 92.56845 * 22 21 19 44 44 H 1.07995 * 119.90344 * 359.97438 * 24 23 22 45 45 H 1.08000 * 120.04739 * 180.02562 * 27 25 24 46 46 H 1.08005 * 119.87370 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.6117 1.6185 -1.4307 5 1 3.2003 0.8324 -1.9038 6 6 3.2380 3.0111 -1.5593 7 6 2.4319 3.0598 -2.8647 8 7 1.4974 2.0969 -2.2627 9 6 0.1717 1.7865 -2.4085 10 1 -0.4187 1.5202 -1.5442 11 6 -0.4134 1.8142 -3.6669 12 7 -1.6841 1.5023 -3.8089 13 14 0.6029 2.2938 -5.1590 14 1 0.5811 3.7700 -5.3191 15 1 2.0035 1.8370 -4.9717 16 1 0.0323 1.6559 -6.3725 17 6 2.1389 -1.1672 0.0005 18 8 3.3481 -1.1693 0.0938 19 6 1.3899 -2.4698 -0.1148 20 1 0.4942 -2.3378 -0.7219 21 6 1.0143 -2.9975 1.2861 22 6 2.2088 -3.9202 1.6207 23 6 2.7505 -4.3695 0.2804 24 6 3.5883 -5.4242 -0.0402 25 6 3.9562 -5.6453 -1.3552 26 9 4.7743 -6.6750 -1.6650 27 6 3.4847 -4.8095 -2.3535 28 6 2.6493 -3.7579 -2.0333 29 6 2.2800 -3.5360 -0.7168 30 1 -0.3633 -0.0410 -1.0269 31 1 -0.3634 -0.8688 0.5489 32 1 -0.3634 0.9098 0.4779 33 1 3.0869 1.1748 0.6232 34 1 1.5580 2.0575 0.3962 35 1 4.3187 3.0060 -1.7013 36 1 2.9063 3.7218 -0.8024 37 1 2.9721 2.6616 -3.7236 38 1 1.9839 4.0334 -3.0632 39 1 -2.0929 1.5213 -4.6884 40 1 0.9428 -2.1788 2.0022 41 1 0.0842 -3.5646 1.2500 42 1 1.8716 -4.7800 2.1997 43 1 2.9708 -3.3682 2.1708 44 1 3.9562 -6.0756 0.7386 45 1 3.7700 -4.9800 -3.3811 46 1 2.2815 -3.1066 -2.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085727214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:37 Heat of formation + Delta-G solvation = -0.431761 kcal Electronic energy + Delta-G solvation = -29358.371919 eV Core-core repulsion = 25357.009642 eV Total energy + Delta-G solvation = -4001.362278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.94907 -41.88616 -40.48676 -39.44777 -36.32492 -36.28634 -34.46355 -32.64873 -30.89870 -30.06789 -29.67021 -28.44361 -27.27407 -25.07015 -24.51168 -24.02467 -22.46364 -22.13165 -21.12889 -19.99538 -18.81275 -18.23112 -18.00227 -17.53690 -17.39404 -17.24071 -16.64665 -16.56062 -16.17362 -15.63189 -15.49139 -15.38769 -15.01971 -14.82321 -14.62139 -14.22740 -14.04930 -13.90040 -13.82227 -13.62520 -13.41181 -13.22750 -13.04388 -12.87842 -12.82372 -12.65786 -12.35471 -12.21488 -12.08792 -11.99119 -11.83352 -11.77957 -11.61932 -11.32962 -10.71147 -10.67279 -9.94779 -9.49572 -9.43978 -8.74326 -8.11442 -5.54571 0.06558 0.20549 1.28559 1.35457 1.41117 1.63936 2.13106 2.43430 2.56389 3.05047 3.08188 3.23127 3.34108 3.47042 3.66929 3.81705 3.91033 3.97463 4.09268 4.20772 4.22383 4.29003 4.34507 4.43410 4.54741 4.58916 4.64065 4.69323 4.72041 4.76364 4.79602 4.83722 4.84612 4.94798 5.02258 5.02931 5.03852 5.07376 5.19083 5.21467 5.27469 5.48255 5.51725 5.61588 5.78256 5.86612 6.23872 6.52590 6.61358 7.24095 7.51732 8.48223 9.06443 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.003804 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.104836 B = 7359.796944 C = 7906.280173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.598 5.598 3 C 0.125 3.875 4 C 0.122 3.878 5 H 0.022 0.978 6 C -0.122 4.122 7 C 0.082 3.918 8 N -0.636 5.636 9 C -0.211 4.211 10 H 0.102 0.898 11 C -0.025 4.025 12 N -0.952 5.952 13 Si 0.925 3.075 14 H -0.283 1.283 15 H -0.261 1.261 16 H -0.311 1.311 17 C 0.522 3.478 18 O -0.577 6.577 19 C -0.074 4.074 20 H 0.104 0.896 21 C -0.098 4.098 22 C -0.076 4.076 23 C -0.058 4.058 24 C -0.145 4.145 25 C 0.088 3.912 26 F -0.143 7.143 27 C -0.160 4.160 28 C -0.086 4.086 29 C -0.099 4.099 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.032 0.968 38 H 0.047 0.953 39 H 0.258 0.742 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.021 -10.016 12.533 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.328 5.328 3 C 0.002 3.998 4 C 0.015 3.985 5 H 0.040 0.960 6 C -0.160 4.160 7 C -0.043 4.043 8 N -0.364 5.364 9 C -0.339 4.339 10 H 0.120 0.880 11 C -0.220 4.220 12 N -0.599 5.599 13 Si 0.755 3.245 14 H -0.209 1.209 15 H -0.185 1.185 16 H -0.239 1.239 17 C 0.310 3.690 18 O -0.457 6.457 19 C -0.095 4.095 20 H 0.123 0.877 21 C -0.136 4.136 22 C -0.113 4.113 23 C -0.058 4.058 24 C -0.163 4.163 25 C 0.068 3.932 26 F -0.122 7.122 27 C -0.178 4.178 28 C -0.104 4.104 29 C -0.100 4.100 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.175 0.825 45 H 0.166 0.834 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.292 -10.097 12.440 17.603 hybrid contribution 0.314 0.265 -2.118 2.157 sum 7.606 -9.831 10.323 16.157 Atomic orbital electron populations 1.22146 0.78140 1.03428 1.02752 1.47758 1.07924 1.05592 1.71572 1.21734 0.96989 0.84820 0.96260 1.22600 0.88312 0.95194 0.92363 0.96011 1.23303 0.99266 0.96210 0.97271 1.22877 0.91453 0.93589 0.96342 1.46203 1.03736 1.38897 1.47567 1.19035 0.82310 1.39283 0.93262 0.88048 1.25954 0.96816 0.99668 0.99594 1.69807 1.12574 1.53879 1.23612 0.86132 0.80022 0.77863 0.80488 1.20916 1.18544 1.23896 1.20648 0.87385 0.85531 0.75396 1.90630 1.15481 1.87890 1.51698 1.20895 0.97845 0.90173 1.00571 0.87745 1.22401 0.99578 0.99695 0.91926 1.21181 0.97210 1.00313 0.92573 1.20649 0.94855 0.93173 0.97097 1.20715 1.00549 1.00010 0.95056 1.17615 0.93862 0.87481 0.94195 1.91477 1.70312 1.56559 1.93840 1.21118 1.00317 0.96167 1.00239 1.20615 0.96842 0.96856 0.96086 1.20309 0.99491 0.96559 0.93593 0.92671 0.89154 0.90619 0.90036 0.89250 0.89350 0.87739 0.95008 0.93494 0.93262 0.89019 0.87025 0.87002 0.89931 0.82538 0.83404 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 7.92 127.77 1.01 3.34 16 2 N -0.60 -19.45 2.89 -846.77 -2.45 -21.90 16 3 C 0.13 4.09 5.26 86.38 0.45 4.55 16 4 C 0.12 4.62 4.25 41.70 0.18 4.80 16 5 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 6 C -0.12 -3.80 8.01 30.84 0.25 -3.55 16 7 C 0.08 3.28 5.81 83.18 0.48 3.76 16 8 N -0.64 -28.55 3.18 -714.41 -2.27 -30.81 16 9 C -0.21 -10.85 9.71 84.03 0.82 -10.04 16 10 H 0.10 5.21 4.71 -2.91 -0.01 5.20 16 11 C -0.02 -1.38 5.50 84.86 0.47 -0.91 16 12 N -0.95 -56.29 13.97 21.65 0.30 -55.99 16 13 Si 0.92 46.08 26.08 68.60 1.79 47.87 16 14 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 15 H -0.26 -12.67 5.46 99.48 0.54 -12.12 16 16 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 17 C 0.52 17.27 6.61 87.66 0.58 17.85 16 18 O -0.58 -22.61 16.00 -3.04 -0.05 -22.66 16 19 C -0.07 -1.97 2.32 -11.61 -0.03 -1.99 16 20 H 0.10 2.82 7.07 -2.38 -0.02 2.80 16 21 C -0.10 -1.77 5.93 31.59 0.19 -1.58 16 22 C -0.08 -1.37 6.76 30.61 0.21 -1.16 16 23 C -0.06 -1.39 6.14 -19.60 -0.12 -1.51 16 24 C -0.14 -3.34 10.02 22.34 0.22 -3.12 16 25 C 0.09 2.26 7.30 22.35 0.16 2.42 16 26 F -0.14 -3.65 17.27 44.97 0.78 -2.87 16 27 C -0.16 -4.28 10.03 22.29 0.22 -4.05 16 28 C -0.09 -2.55 10.04 22.29 0.22 -2.32 16 29 C -0.10 -2.82 4.88 -19.58 -0.10 -2.91 16 30 H 0.05 2.14 5.80 -2.39 -0.01 2.13 16 31 H 0.09 2.03 6.32 -2.39 -0.02 2.01 16 32 H 0.08 2.17 7.63 -2.39 -0.02 2.16 16 33 H 0.08 2.52 7.58 -2.39 -0.02 2.50 16 34 H 0.09 2.73 7.79 -2.39 -0.02 2.72 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.10 2.83 8.11 -2.39 -0.02 2.81 16 37 H 0.03 1.34 6.20 -2.39 -0.01 1.33 16 38 H 0.05 1.87 7.95 -2.39 -0.02 1.85 16 39 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.09 1.51 7.83 -2.39 -0.02 1.49 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 45 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 46 H 0.12 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -68.88 365.75 4.16 -64.72 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.83 Total: 18.09 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.22 Total: 3.56 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -4.42 Total: -108.70 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.79 Total: 47.87 kcal Total: -68.88 4.16 -64.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085727214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.291 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds