Wall clock time and date at job start Tue Mar 31 2020 16:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00090 * 2 1 4 4 C 1.53001 * 109.46983 * 84.28183 * 3 2 1 5 5 H 1.09002 * 112.77937 * 316.23181 * 4 3 2 6 6 C 1.53494 * 113.46733 * 87.01375 * 4 3 2 7 7 C 1.53244 * 83.42541 * 140.67793 * 6 4 3 8 8 N 1.47058 * 88.08496 * 334.10130 * 7 6 4 9 9 C 1.36942 * 136.06025 * 207.20361 * 8 7 6 10 10 H 1.08001 * 119.99930 * 171.89077 * 9 8 7 11 11 C 1.38812 * 119.99666 * 351.89016 * 9 8 7 12 12 N 1.31621 * 120.00103 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99900 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47072 * 179.97438 * 13 11 9 15 15 H 1.48496 * 109.47370 * 300.00638 * 13 11 9 16 16 H 1.48509 * 109.46616 * 60.00457 * 13 11 9 17 17 C 1.34772 * 119.99623 * 179.97438 * 2 1 3 18 18 O 1.21285 * 119.99917 * 179.97438 * 17 2 1 19 19 C 1.50698 * 120.00385 * 0.02562 * 17 2 1 20 20 H 1.08999 * 115.55037 * 34.40837 * 19 17 2 21 21 C 1.53004 * 117.49617 * 248.74582 * 19 17 2 22 22 C 1.53007 * 117.50256 * 180.08789 * 19 17 2 23 23 H 1.08995 * 117.49507 * 359.97438 * 22 19 17 24 24 C 1.50696 * 117.49710 * 214.97668 * 22 19 17 25 25 C 1.38224 * 120.01486 * 299.99460 * 24 22 19 26 26 C 1.38215 * 120.02859 * 179.97438 * 25 24 22 27 27 C 1.38273 * 120.05065 * 0.02562 * 26 25 24 28 28 C 1.38175 * 120.02529 * 0.02562 * 27 26 25 29 29 C 1.38436 * 120.01232 * 119.72221 * 24 22 19 30 30 F 1.35102 * 120.02647 * 359.97438 * 29 24 22 31 31 H 1.08997 * 109.46899 * 91.75024 * 1 2 3 32 32 H 1.08997 * 109.47490 * 211.75269 * 1 2 3 33 33 H 1.08998 * 109.47045 * 331.75529 * 1 2 3 34 34 H 1.08997 * 109.47150 * 324.28065 * 3 2 1 35 35 H 1.09003 * 109.46577 * 204.27909 * 3 2 1 36 36 H 1.09002 * 114.20785 * 254.42968 * 6 4 3 37 37 H 1.09002 * 114.20813 * 27.06494 * 6 4 3 38 38 H 1.09004 * 113.37633 * 219.28805 * 7 6 4 39 39 H 1.08994 * 113.47064 * 88.93207 * 7 6 4 40 40 H 0.97002 * 119.99677 * 180.02562 * 12 11 9 41 41 H 1.09001 * 117.50003 * 0.02562 * 21 19 17 42 42 H 1.09011 * 117.49950 * 144.99345 * 21 19 17 43 43 H 1.07998 * 119.98350 * 0.02562 * 25 24 22 44 44 H 1.08002 * 119.97833 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.98736 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.01258 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3281 1.7822 1.4353 5 1 1.4020 1.6892 2.0027 6 6 3.5551 1.2292 2.1732 7 6 3.6408 2.6531 2.7330 8 7 2.9393 3.1168 1.5266 9 6 2.8841 4.2781 0.8030 10 1 2.3651 4.3002 -0.1438 11 6 3.4953 5.4268 1.2867 12 7 4.1282 5.3996 2.4404 13 14 3.4206 7.0108 0.2994 14 1 4.1444 8.0831 1.0286 15 1 4.0546 6.7981 -1.0265 16 1 2.0027 7.4106 0.1117 17 6 2.1388 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0001 19 6 1.3853 -2.4723 0.0005 20 1 0.4478 -2.4739 -0.5555 21 6 1.4577 -3.3298 1.2656 22 6 2.2074 -3.7628 0.0032 23 1 3.2932 -3.6677 0.0045 24 6 1.6587 -4.9388 -0.7628 25 6 0.4285 -5.4709 -0.4250 26 6 -0.0752 -6.5492 -1.1278 27 6 0.6509 -7.0973 -2.1691 28 6 1.8813 -6.5677 -2.5080 29 6 2.3840 -5.4831 -1.8089 30 9 3.5837 -4.9600 -2.1439 31 1 -0.3633 -0.0314 -1.0272 32 1 -0.3634 -0.8738 0.5408 33 1 -0.3633 0.9053 0.4863 34 1 1.6567 2.0005 -0.5999 35 1 3.1905 1.1149 -0.4226 36 1 3.3233 0.4673 2.9175 37 1 4.3836 0.9553 1.5199 38 1 4.6620 3.0261 2.8117 39 1 3.0681 2.7944 3.6495 40 1 4.5549 6.2024 2.7785 41 1 2.0500 -2.9497 2.0981 42 1 0.5678 -3.8956 1.5418 43 1 -0.1396 -5.0434 0.3879 44 1 -1.0366 -6.9641 -0.8634 45 1 0.2565 -7.9401 -2.7172 46 1 2.4484 -6.9962 -3.3211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085865757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:07 Heat of formation + Delta-G solvation = 37.053740 kcal Electronic energy + Delta-G solvation = -27965.623873 eV Core-core repulsion = 23965.887088 eV Total energy + Delta-G solvation = -3999.736784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -49.06817 -40.39141 -39.32190 -38.02541 -36.50760 -35.15310 -32.16712 -31.16187 -30.79894 -28.71079 -27.84631 -26.51311 -24.62272 -24.10639 -23.33380 -22.76387 -21.80127 -20.77801 -19.13751 -18.82866 -18.16954 -17.27666 -16.66230 -16.52560 -16.09136 -15.92149 -15.72492 -15.38831 -14.78752 -14.53209 -14.49218 -14.07251 -13.86811 -13.54335 -13.41813 -12.99182 -12.82462 -12.74922 -12.66119 -12.38000 -12.05014 -11.96809 -11.74523 -11.46188 -11.44155 -11.05744 -11.01484 -10.84740 -10.72424 -10.66480 -10.38798 -9.83501 -9.77699 -9.67250 -9.36016 -9.25491 -8.85816 -8.75179 -8.24078 -6.82214 -5.73983 -3.06044 0.75342 0.82600 2.59666 3.04929 3.24923 3.41240 3.45160 3.46659 3.75243 3.96223 4.15878 4.33766 4.48121 4.53768 4.55030 4.63084 4.74060 4.93142 4.95069 5.00158 5.17244 5.28752 5.36811 5.41737 5.50393 5.51455 5.63317 5.67288 5.69428 5.73385 5.76641 5.82456 5.94878 6.00316 6.05049 6.10737 6.13892 6.44473 6.52358 6.56807 6.70902 6.80685 6.88100 7.29739 7.50409 7.61697 7.62545 8.01495 8.39352 9.06634 9.73702 10.70305 11.44395 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.002261 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.381677 B =12382.872709 C =12440.832251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.606 5.606 3 C 0.114 3.886 4 C 0.131 3.869 5 H 0.040 0.960 6 C -0.158 4.158 7 C 0.158 3.842 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.918 5.918 13 Si 0.911 3.089 14 H -0.290 1.290 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.539 3.461 18 O -0.530 6.530 19 C -0.170 4.170 20 H 0.124 0.876 21 C -0.140 4.140 22 C -0.091 4.091 23 H 0.131 0.869 24 C -0.083 4.083 25 C -0.093 4.093 26 C -0.128 4.128 27 C -0.097 4.097 28 C -0.153 4.153 29 C 0.109 3.891 30 F -0.133 7.133 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.254 0.746 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 -26.172 -5.962 29.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.339 5.339 3 C -0.009 4.009 4 C 0.023 3.977 5 H 0.057 0.943 6 C -0.197 4.197 7 C 0.033 3.967 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.210 1.210 16 H -0.212 1.212 17 C 0.326 3.674 18 O -0.407 6.407 19 C -0.192 4.192 20 H 0.142 0.858 21 C -0.177 4.177 22 C -0.109 4.109 23 H 0.149 0.851 24 C -0.084 4.084 25 C -0.111 4.111 26 C -0.147 4.147 27 C -0.115 4.115 28 C -0.172 4.172 29 C 0.089 3.911 30 F -0.111 7.111 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.152 0.848 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.913 -25.729 -6.045 28.594 hybrid contribution -0.144 1.159 -0.557 1.294 sum -11.057 -24.570 -6.603 27.741 Atomic orbital electron populations 1.21775 0.79992 1.03307 1.01390 1.47763 1.06806 1.06337 1.73018 1.21917 0.97562 0.82245 0.99157 1.22423 0.95161 0.87132 0.93007 0.94283 1.23609 0.98747 0.97501 0.99799 1.21879 0.97779 0.87664 0.89409 1.45614 1.50389 1.08270 1.28440 1.18823 1.30705 0.85336 0.99784 0.90341 1.24839 1.00977 0.97574 0.96966 1.69846 1.39097 1.28031 1.19473 0.86227 0.77514 0.83109 0.79072 1.21566 1.21039 1.21189 1.19484 0.87392 0.84110 0.76397 1.90715 1.13600 1.86978 1.49380 1.22397 1.01765 0.90272 1.04724 0.85839 1.23147 1.02699 1.00684 0.91140 1.20958 0.99921 0.90735 0.99289 0.85124 1.19225 0.95460 0.97558 0.96176 1.20990 0.94313 0.96092 0.99703 1.21190 1.00447 0.96745 0.96279 1.21023 0.93680 0.99648 0.97108 1.21179 0.97812 0.96664 1.01559 1.17555 0.82513 0.94857 0.96134 1.91538 1.42369 1.85723 1.91465 0.92925 0.91282 0.90589 0.91027 0.89327 0.93302 0.90092 0.92041 0.95708 0.93603 0.87270 0.87425 0.84785 0.85253 0.85071 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.98 59.85 0.60 1.44 16 2 N -0.61 -9.08 2.87 -181.57 -0.52 -9.61 16 3 C 0.11 2.14 5.41 -4.04 -0.02 2.12 16 4 C 0.13 2.77 4.32 -72.41 -0.31 2.45 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -3.34 8.00 -26.35 -0.21 -3.55 16 7 C 0.16 3.95 7.21 -8.65 -0.06 3.89 16 8 N -0.60 -15.78 3.64 -177.19 -0.65 -16.43 16 9 C -0.22 -6.19 10.55 -15.06 -0.16 -6.34 16 10 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.94 11.73 55.49 0.65 -27.29 16 13 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.54 8.31 7.46 -10.99 -0.08 8.23 16 18 O -0.53 -10.29 15.75 5.55 0.09 -10.21 16 19 C -0.17 -1.88 4.43 -91.77 -0.41 -2.29 16 20 H 0.12 1.10 7.30 -51.93 -0.38 0.72 16 21 C -0.14 -1.26 9.57 -26.69 -0.26 -1.52 16 22 C -0.09 -1.00 5.31 -91.73 -0.49 -1.49 16 23 H 0.13 1.77 7.40 -51.93 -0.38 1.38 16 24 C -0.08 -0.81 5.62 -104.56 -0.59 -1.40 16 25 C -0.09 -0.67 9.30 -39.60 -0.37 -1.04 16 26 C -0.13 -0.78 10.04 -39.58 -0.40 -1.18 16 27 C -0.10 -0.61 10.04 -39.59 -0.40 -1.00 16 28 C -0.15 -1.24 10.03 -39.51 -0.40 -1.63 16 29 C 0.11 1.15 7.25 -39.42 -0.29 0.86 16 30 F -0.13 -1.69 16.62 2.25 0.04 -1.66 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.57 6.74 -51.93 -0.35 0.22 16 33 H 0.08 0.83 8.06 -51.93 -0.42 0.42 16 34 H 0.07 1.33 8.11 -51.93 -0.42 0.91 16 35 H 0.09 1.87 6.98 -51.93 -0.36 1.51 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.80 7.93 -51.93 -0.41 1.39 16 38 H 0.06 1.68 7.50 -51.93 -0.39 1.29 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.11 0.66 6.18 -51.92 -0.32 0.34 16 43 H 0.13 0.70 6.02 -52.49 -0.32 0.38 16 44 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 45 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 46 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -34.45 384.77 -10.23 -44.68 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.68 Total: 0.07 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.93 Total: -2.74 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.52 Total: -53.32 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.45 -10.23 -44.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085865757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.734 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds