Wall clock time and date at job start Tue Mar 31 2020 16:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00090 * 2 1 4 4 C 1.53001 * 109.46983 * 84.28183 * 3 2 1 5 5 H 1.09002 * 112.77937 * 316.23181 * 4 3 2 6 6 C 1.53494 * 113.46733 * 87.01375 * 4 3 2 7 7 C 1.53244 * 83.42541 * 140.67793 * 6 4 3 8 8 N 1.47058 * 88.08496 * 334.10130 * 7 6 4 9 9 C 1.36942 * 136.06025 * 207.20361 * 8 7 6 10 10 H 1.08001 * 119.99930 * 171.89077 * 9 8 7 11 11 C 1.38812 * 119.99666 * 351.89016 * 9 8 7 12 12 N 1.31621 * 120.00103 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99900 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47072 * 179.97438 * 13 11 9 15 15 H 1.48496 * 109.47370 * 300.00638 * 13 11 9 16 16 H 1.48509 * 109.46616 * 60.00457 * 13 11 9 17 17 C 1.34772 * 119.99623 * 179.97438 * 2 1 3 18 18 O 1.21285 * 119.99917 * 179.97438 * 17 2 1 19 19 C 1.50698 * 120.00385 * 0.02562 * 17 2 1 20 20 H 1.08999 * 115.55037 * 34.40837 * 19 17 2 21 21 C 1.53004 * 117.49617 * 248.74582 * 19 17 2 22 22 C 1.53007 * 117.50256 * 180.08789 * 19 17 2 23 23 H 1.08995 * 117.49507 * 359.97438 * 22 19 17 24 24 C 1.50696 * 117.49710 * 214.97668 * 22 19 17 25 25 C 1.38224 * 120.01486 * 299.99460 * 24 22 19 26 26 C 1.38215 * 120.02859 * 179.97438 * 25 24 22 27 27 C 1.38273 * 120.05065 * 0.02562 * 26 25 24 28 28 C 1.38175 * 120.02529 * 0.02562 * 27 26 25 29 29 C 1.38436 * 120.01232 * 119.72221 * 24 22 19 30 30 F 1.35102 * 120.02647 * 359.97438 * 29 24 22 31 31 H 1.08997 * 109.46899 * 91.75024 * 1 2 3 32 32 H 1.08997 * 109.47490 * 211.75269 * 1 2 3 33 33 H 1.08998 * 109.47045 * 331.75529 * 1 2 3 34 34 H 1.08997 * 109.47150 * 324.28065 * 3 2 1 35 35 H 1.09003 * 109.46577 * 204.27909 * 3 2 1 36 36 H 1.09002 * 114.20785 * 254.42968 * 6 4 3 37 37 H 1.09002 * 114.20813 * 27.06494 * 6 4 3 38 38 H 1.09004 * 113.37633 * 219.28805 * 7 6 4 39 39 H 1.08994 * 113.47064 * 88.93207 * 7 6 4 40 40 H 0.97002 * 119.99677 * 180.02562 * 12 11 9 41 41 H 1.09001 * 117.50003 * 0.02562 * 21 19 17 42 42 H 1.09011 * 117.49950 * 144.99345 * 21 19 17 43 43 H 1.07998 * 119.98350 * 0.02562 * 25 24 22 44 44 H 1.08002 * 119.97833 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.98736 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.01258 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3281 1.7822 1.4353 5 1 1.4020 1.6892 2.0027 6 6 3.5551 1.2292 2.1732 7 6 3.6408 2.6531 2.7330 8 7 2.9393 3.1168 1.5266 9 6 2.8841 4.2781 0.8030 10 1 2.3651 4.3002 -0.1438 11 6 3.4953 5.4268 1.2867 12 7 4.1282 5.3996 2.4404 13 14 3.4206 7.0108 0.2994 14 1 4.1444 8.0831 1.0286 15 1 4.0546 6.7981 -1.0265 16 1 2.0027 7.4106 0.1117 17 6 2.1388 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0001 19 6 1.3853 -2.4723 0.0005 20 1 0.4478 -2.4739 -0.5555 21 6 1.4577 -3.3298 1.2656 22 6 2.2074 -3.7628 0.0032 23 1 3.2932 -3.6677 0.0045 24 6 1.6587 -4.9388 -0.7628 25 6 0.4285 -5.4709 -0.4250 26 6 -0.0752 -6.5492 -1.1278 27 6 0.6509 -7.0973 -2.1691 28 6 1.8813 -6.5677 -2.5080 29 6 2.3840 -5.4831 -1.8089 30 9 3.5837 -4.9600 -2.1439 31 1 -0.3633 -0.0314 -1.0272 32 1 -0.3634 -0.8738 0.5408 33 1 -0.3633 0.9053 0.4863 34 1 1.6567 2.0005 -0.5999 35 1 3.1905 1.1149 -0.4226 36 1 3.3233 0.4673 2.9175 37 1 4.3836 0.9553 1.5199 38 1 4.6620 3.0261 2.8117 39 1 3.0681 2.7944 3.6495 40 1 4.5549 6.2024 2.7785 41 1 2.0500 -2.9497 2.0981 42 1 0.5678 -3.8956 1.5418 43 1 -0.1396 -5.0434 0.3879 44 1 -1.0366 -6.9641 -0.8634 45 1 0.2565 -7.9401 -2.7172 46 1 2.4484 -6.9962 -3.3211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085865757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:06 Heat of formation + Delta-G solvation = 17.386585 kcal Electronic energy + Delta-G solvation = -27966.476705 eV Core-core repulsion = 23965.887088 eV Total energy + Delta-G solvation = -4000.589616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.88818 -41.44336 -40.27089 -39.59450 -37.41116 -36.43858 -34.29350 -31.78936 -31.36330 -30.15065 -29.91402 -27.53116 -25.66105 -25.35711 -24.95604 -23.48556 -23.14325 -21.52791 -21.05382 -19.93282 -18.96207 -18.67685 -18.07716 -17.50052 -17.16354 -16.91127 -16.73342 -16.58280 -16.34923 -15.83184 -15.48137 -15.25490 -15.05746 -15.00734 -14.31882 -14.10210 -13.89874 -13.82264 -13.63118 -13.45417 -13.43116 -13.08283 -13.01861 -12.95465 -12.65996 -12.56036 -12.33741 -12.28140 -12.11460 -11.87062 -11.77601 -11.66977 -11.46716 -11.22116 -10.86958 -10.80158 -9.83051 -9.61794 -9.49608 -8.92216 -7.92546 -5.26243 0.17099 0.28220 1.43540 1.47985 1.50129 1.53869 1.95075 2.47262 2.57401 2.97112 3.26090 3.32118 3.36737 3.47589 3.62419 3.80218 3.81120 3.85596 4.03080 4.13004 4.20412 4.24292 4.32307 4.37329 4.40495 4.41142 4.47163 4.63723 4.72467 4.79164 4.83400 4.91720 4.96509 4.97692 4.98742 5.05629 5.09845 5.15607 5.18428 5.28485 5.43974 5.46652 5.50529 5.51949 5.69950 5.90109 5.99163 6.45223 6.87863 7.20483 7.58328 8.60308 9.26565 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.002261 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.381677 B =12382.872709 C =12440.832251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.605 5.605 3 C 0.128 3.872 4 C 0.140 3.860 5 H 0.058 0.942 6 C -0.134 4.134 7 C 0.156 3.844 8 N -0.630 5.630 9 C -0.226 4.226 10 H 0.089 0.911 11 C -0.071 4.071 12 N -0.957 5.957 13 Si 0.981 3.019 14 H -0.296 1.296 15 H -0.277 1.277 16 H -0.271 1.271 17 C 0.530 3.470 18 O -0.583 6.583 19 C -0.169 4.169 20 H 0.155 0.845 21 C -0.113 4.113 22 C -0.103 4.103 23 H 0.090 0.910 24 C -0.096 4.096 25 C -0.090 4.090 26 C -0.120 4.120 27 C -0.093 4.093 28 C -0.161 4.161 29 C 0.066 3.934 30 F -0.160 7.160 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.023 0.977 40 H 0.248 0.752 41 H 0.097 0.903 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.161 0.839 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.944 -28.477 -6.460 33.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.337 5.337 3 C 0.004 3.996 4 C 0.033 3.967 5 H 0.075 0.925 6 C -0.173 4.173 7 C 0.030 3.970 8 N -0.356 5.356 9 C -0.353 4.353 10 H 0.107 0.893 11 C -0.264 4.264 12 N -0.605 5.605 13 Si 0.809 3.191 14 H -0.222 1.222 15 H -0.203 1.203 16 H -0.197 1.197 17 C 0.320 3.680 18 O -0.463 6.463 19 C -0.190 4.190 20 H 0.173 0.827 21 C -0.150 4.150 22 C -0.122 4.122 23 H 0.108 0.892 24 C -0.097 4.097 25 C -0.108 4.108 26 C -0.138 4.138 27 C -0.111 4.111 28 C -0.179 4.179 29 C 0.047 3.953 30 F -0.139 7.139 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.168 0.832 43 H 0.179 0.821 44 H 0.182 0.818 45 H 0.179 0.821 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.229 -28.074 -6.564 32.606 hybrid contribution 1.159 1.742 -0.414 2.133 sum -14.070 -26.332 -6.978 30.660 Atomic orbital electron populations 1.22099 0.76767 1.04836 1.03281 1.47818 1.08638 1.04717 1.72553 1.21421 0.96750 0.84276 0.97160 1.22489 0.95279 0.84294 0.94654 0.92500 1.23344 0.98353 0.95945 0.99620 1.21836 0.95760 0.89915 0.89497 1.45936 1.51587 1.09463 1.28650 1.19270 1.29680 0.86081 1.00310 0.89324 1.25746 1.01262 1.01096 0.98298 1.70046 1.40604 1.28446 1.21418 0.85115 0.77941 0.78576 0.77489 1.22204 1.20342 1.19703 1.20326 0.87099 0.85542 0.75048 1.90698 1.16168 1.87803 1.51627 1.22377 1.02133 0.87547 1.06964 0.82736 1.23311 1.03289 0.98881 0.89534 1.20788 0.98135 0.91668 1.01581 0.89157 1.19244 0.96726 0.97507 0.96188 1.21300 0.93097 0.96148 1.00256 1.21640 1.01360 0.95653 0.95103 1.21438 0.92573 0.99953 0.97137 1.21404 0.98854 0.96051 1.01626 1.18075 0.82437 0.96728 0.98043 1.91462 1.44120 1.86374 1.91907 0.90986 0.87930 0.90782 0.90821 0.92545 0.90450 0.91825 0.95545 0.95955 0.94302 0.88483 0.83172 0.82058 0.81845 0.82148 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 9.98 127.77 1.28 2.55 16 2 N -0.61 -17.31 2.87 -846.76 -2.43 -19.74 16 3 C 0.13 4.82 5.41 86.38 0.47 5.29 16 4 C 0.14 5.88 4.32 41.78 0.18 6.06 16 5 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 6 C -0.13 -5.76 8.00 30.84 0.25 -5.51 16 7 C 0.16 8.04 7.21 83.09 0.60 8.64 16 8 N -0.63 -33.72 3.64 -714.50 -2.60 -36.32 16 9 C -0.23 -12.90 10.55 84.03 0.89 -12.01 16 10 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 11 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 12 N -0.96 -60.15 11.73 21.65 0.25 -59.90 16 13 Si 0.98 46.74 29.55 68.60 2.03 48.76 16 14 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 C 0.53 16.14 7.46 87.66 0.65 16.79 16 18 O -0.58 -23.70 15.75 -3.05 -0.05 -23.74 16 19 C -0.17 -3.37 4.43 -11.54 -0.05 -3.42 16 20 H 0.16 2.09 7.30 -2.39 -0.02 2.08 16 21 C -0.11 -1.72 9.57 30.62 0.29 -1.43 16 22 C -0.10 -2.24 5.31 -11.51 -0.06 -2.30 16 23 H 0.09 2.69 7.40 -2.39 -0.02 2.67 16 24 C -0.10 -1.75 5.62 -19.82 -0.11 -1.86 16 25 C -0.09 -0.94 9.30 22.26 0.21 -0.73 16 26 C -0.12 -0.89 10.04 22.27 0.22 -0.66 16 27 C -0.09 -0.85 10.04 22.26 0.22 -0.62 16 28 C -0.16 -2.42 10.03 22.31 0.22 -2.20 16 29 C 0.07 1.42 7.25 22.38 0.16 1.58 16 30 F -0.16 -4.49 16.62 44.97 0.75 -3.75 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.16 6.74 -2.39 -0.02 1.15 16 33 H 0.07 1.38 8.06 -2.39 -0.02 1.36 16 34 H 0.07 2.72 8.11 -2.39 -0.02 2.70 16 35 H 0.06 2.49 6.98 -2.39 -0.02 2.47 16 36 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.06 2.96 7.93 -2.39 -0.02 2.94 16 38 H 0.03 1.52 7.50 -2.39 -0.02 1.50 16 39 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.15 0.99 6.18 -2.38 -0.01 0.97 16 43 H 0.16 0.70 6.02 -2.91 -0.02 0.68 16 44 H 0.16 0.15 8.06 -2.91 -0.02 0.12 16 45 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 46 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -81.24 384.77 4.81 -76.43 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.98 Total: 11.83 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 5.89 Total: 6.44 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -4.78 Total: -115.96 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.75 Total: -3.75 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -81.24 4.81 -76.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085865757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.812 kcal (2) G-P(sol) polarization free energy of solvation -81.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds