Wall clock time and date at job start Tue Mar 31 2020 17:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00197 * 2 1 4 4 H 1.48501 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46940 * 299.99693 * 3 2 1 6 6 H 1.48495 * 109.46996 * 60.00066 * 3 2 1 7 7 C 1.38811 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00315 * 189.10055 * 7 2 1 9 9 N 1.36946 * 119.99701 * 9.10366 * 7 2 1 10 10 C 1.48156 * 127.83674 * 15.56499 * 9 7 2 11 11 C 1.54387 * 104.57791 * 140.41462 * 10 9 7 12 12 H 1.09000 * 110.97672 * 263.35200 * 11 10 9 13 13 C 1.54145 * 105.00361 * 23.96058 * 11 10 9 14 14 H 1.09004 * 110.83031 * 240.13451 * 13 11 10 15 15 C 1.48148 * 127.83345 * 195.57178 * 9 7 2 16 16 C 1.53015 * 109.80392 * 116.87032 * 13 11 10 17 17 H 1.08997 * 109.64475 * 179.55537 * 16 13 11 18 18 C 1.53005 * 109.72075 * 300.69511 * 16 13 11 19 19 C 1.52911 * 110.00213 * 57.72922 * 18 16 13 20 20 C 1.53265 * 109.62030 * 2.72208 * 19 18 16 21 21 H 1.08995 * 110.52457 * 176.67684 * 20 19 18 22 22 N 1.47628 * 108.18054 * 55.53231 * 20 19 18 23 23 C 1.34773 * 122.01031 * 121.23258 * 22 20 19 24 24 O 1.21280 * 120.00269 * 359.97438 * 23 22 20 25 25 C 1.50706 * 119.99745 * 180.02562 * 23 22 20 26 26 N 1.46503 * 109.46943 * 179.97438 * 25 23 22 27 27 C 1.34594 * 126.43292 * 124.71000 * 26 25 23 28 28 N 1.31078 * 106.67363 * 179.87229 * 27 26 25 29 29 N 1.28841 * 107.99147 * 0.39094 * 28 27 26 30 30 N 1.28738 * 109.39752 * 359.75044 * 29 28 27 31 31 C 1.48654 * 115.31064 * 300.63892 * 22 20 19 32 32 H 0.97005 * 119.99881 * 0.02562 * 1 2 3 33 33 H 1.09000 * 110.41099 * 21.63790 * 10 9 7 34 34 H 1.08997 * 110.51460 * 259.23970 * 10 9 7 35 35 H 1.08993 * 110.40884 * 338.28569 * 15 9 7 36 36 H 1.08997 * 110.40762 * 100.72190 * 15 9 7 37 37 H 1.09004 * 108.60777 * 298.05063 * 18 16 13 38 38 H 1.08995 * 110.14530 * 178.38005 * 18 16 13 39 39 H 1.09002 * 109.44289 * 242.68634 * 19 18 16 40 40 H 1.08998 * 109.43962 * 122.75792 * 19 18 16 41 41 H 1.08997 * 109.46737 * 299.99693 * 25 23 22 42 42 H 1.08993 * 109.47315 * 59.99704 * 25 23 22 43 43 H 1.07998 * 126.66574 * 0.02562 * 27 26 25 44 44 H 1.08998 * 110.15197 * 241.58763 * 31 22 20 45 45 H 1.09000 * 109.74900 * 120.35490 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3384 -2.3807 -0.1866 10 6 -0.0344 -2.5710 -0.7102 11 6 0.0645 -3.8173 -1.6161 12 1 0.1940 -3.5316 -2.6600 13 6 1.2842 -4.5983 -1.0886 14 1 2.0416 -4.7050 -1.8652 15 6 1.8195 -3.7545 0.0888 16 6 0.8371 -5.9628 -0.5600 17 1 1.7024 -6.5159 -0.1949 18 6 -0.1809 -5.7719 0.5662 19 6 -1.3765 -4.9646 0.0592 20 6 -1.1997 -4.6653 -1.4334 21 1 -2.0716 -4.1406 -1.8239 22 7 -1.0067 -5.9467 -2.1405 23 6 -1.8326 -6.3502 -3.1262 24 8 -2.7687 -5.6533 -3.4563 25 6 -1.5936 -7.6679 -3.8174 26 7 -2.6203 -7.8754 -4.8416 27 6 -2.4081 -8.1214 -6.1478 28 7 -3.5887 -8.2445 -6.7039 29 7 -4.4794 -8.0743 -5.7887 30 7 -3.8977 -7.8511 -4.6621 31 6 0.1652 -6.7468 -1.6976 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3435 -1.7021 -1.2912 34 1 -0.7336 -2.7494 0.1068 35 1 2.9090 -3.7788 0.1092 36 1 1.4126 -4.1177 1.0325 37 1 0.3001 -5.2323 1.3821 38 1 -0.5258 -6.7403 0.9286 39 1 -1.4420 -4.0274 0.6119 40 1 -2.2911 -5.5384 0.2083 41 1 -0.6093 -7.6592 -4.2855 42 1 -1.6413 -8.4753 -3.0868 43 1 -1.4511 -8.2040 -6.6413 44 1 0.8642 -6.8778 -2.5236 45 1 -0.1684 -7.7188 -1.3343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089771390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:05 Heat of formation + Delta-G solvation = 136.637793 kcal Electronic energy + Delta-G solvation = -29631.867522 eV Core-core repulsion = 25688.661739 eV Total energy + Delta-G solvation = -3943.205783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.33490 -41.29257 -39.11216 -35.85781 -35.58110 -33.33032 -32.60731 -32.13277 -31.80583 -29.67737 -29.13012 -27.23313 -25.58056 -24.37639 -24.00643 -23.56985 -22.18385 -21.32692 -20.52194 -20.04662 -18.13715 -17.88976 -17.14227 -16.87006 -16.46526 -16.30048 -16.23608 -15.71256 -15.15329 -14.91984 -14.56918 -13.76534 -13.70036 -13.43703 -13.35437 -13.13411 -12.83670 -12.77529 -12.42750 -12.30329 -11.91472 -11.89498 -11.72698 -11.39580 -11.34900 -11.30831 -11.17153 -10.90879 -10.65416 -10.58485 -10.25709 -10.23426 -10.04542 -9.95981 -9.83589 -9.74552 -9.46058 -8.75750 -8.56499 -6.89883 -5.84999 -3.19341 1.03961 1.58734 2.11615 2.24797 2.68319 3.33606 3.39736 3.42177 3.74560 3.97255 3.99384 4.31859 4.40222 4.54921 4.55296 4.70959 4.81146 5.04583 5.06764 5.15780 5.20512 5.37220 5.43293 5.47454 5.51741 5.54426 5.69308 5.71064 5.76386 5.77353 5.81394 5.93632 6.05019 6.11975 6.31847 6.34113 6.40409 6.48683 6.54279 6.70497 6.90432 7.22308 7.32015 7.49556 7.66797 7.84254 8.15494 8.44677 9.05300 9.68704 10.45079 11.28744 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020117 B = 0.002977 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.502715 B = 9403.916369 C =10054.003669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.004 4.004 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.160 3.840 11 C -0.116 4.116 12 H 0.068 0.932 13 C -0.093 4.093 14 H 0.069 0.931 15 C 0.126 3.874 16 C -0.087 4.087 17 H 0.087 0.913 18 C -0.115 4.115 19 C -0.133 4.133 20 C 0.154 3.846 21 H 0.101 0.899 22 N -0.599 5.599 23 C 0.505 3.495 24 O -0.515 6.515 25 C 0.097 3.903 26 N -0.299 5.299 27 C 0.158 3.842 28 N -0.308 5.308 29 N -0.081 5.081 30 N -0.061 5.061 31 C 0.108 3.892 32 H 0.254 0.746 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.141 0.859 42 H 0.133 0.867 43 H 0.235 0.765 44 H 0.071 0.929 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.172 -19.571 -4.189 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.317 5.317 10 C 0.034 3.966 11 C -0.137 4.137 12 H 0.086 0.914 13 C -0.113 4.113 14 H 0.088 0.912 15 C -0.001 4.001 16 C -0.106 4.106 17 H 0.105 0.895 18 C -0.152 4.152 19 C -0.171 4.171 20 C 0.052 3.948 21 H 0.119 0.881 22 N -0.334 5.334 23 C 0.289 3.711 24 O -0.390 6.390 25 C -0.028 4.028 26 N -0.101 5.101 27 C -0.140 4.140 28 N -0.156 5.156 29 N -0.075 5.075 30 N -0.047 5.047 31 C -0.014 4.014 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.077 0.923 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.251 0.749 44 H 0.089 0.911 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.207 -18.940 -4.353 19.472 hybrid contribution 1.712 0.867 0.095 1.922 sum 2.919 -18.073 -4.258 18.796 Atomic orbital electron populations 1.69887 1.05033 1.25359 1.55642 1.24885 0.95612 0.97945 1.01727 0.86087 0.78860 0.83701 0.77331 1.20419 1.21622 1.21683 1.19009 0.90738 0.82386 1.43498 0.90659 1.44902 1.13456 0.99956 1.73387 1.21755 0.87351 0.93374 0.94124 1.22699 0.92456 0.97598 1.00904 0.91353 1.22137 0.97127 0.93051 0.98963 0.91210 1.21891 0.96971 0.86820 0.94385 1.21383 0.97954 0.96700 0.94558 0.89513 1.21568 0.95665 0.99828 0.98140 1.22040 0.97744 1.02005 0.95331 1.21468 0.99666 0.82178 0.91455 0.88110 1.48860 1.27379 1.22182 1.34952 1.19893 0.83337 0.86974 0.80923 1.90855 1.29550 1.55053 1.63527 1.22054 0.89848 0.99875 0.91055 1.48187 1.06574 1.45974 1.09359 1.27722 1.02072 1.02151 0.82079 1.74981 0.96844 1.18651 1.25077 1.78674 1.22217 1.14453 0.92144 1.79029 0.88772 1.15496 1.21439 1.22294 0.86974 0.94185 0.97914 0.93574 0.89823 0.94820 0.93908 0.95022 0.90401 0.92362 0.88731 0.92316 0.84154 0.84916 0.74924 0.91082 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.90 10.86 55.49 0.60 -25.30 16 2 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 3 Si 0.91 21.38 29.56 -169.99 -5.03 16.36 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.04 10.35 -15.06 -0.16 -6.19 16 8 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 9 N -0.59 -13.97 3.38 -168.84 -0.57 -14.54 16 10 C 0.16 3.51 5.18 -2.40 -0.01 3.50 16 11 C -0.12 -1.94 3.35 -89.13 -0.30 -2.24 16 12 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.09 -1.32 3.13 -89.27 -0.28 -1.60 16 14 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 15 C 0.13 2.27 6.54 -2.39 -0.02 2.25 16 16 C -0.09 -0.88 2.87 -90.28 -0.26 -1.14 16 17 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.11 -1.29 5.31 -26.77 -0.14 -1.44 16 19 C -0.13 -1.81 5.55 -26.64 -0.15 -1.96 16 20 C 0.15 2.27 3.07 -67.01 -0.21 2.06 16 21 H 0.10 1.74 7.19 -51.93 -0.37 1.36 16 22 N -0.60 -6.72 2.85 -162.79 -0.46 -7.19 16 23 C 0.50 5.97 7.78 -10.98 -0.09 5.88 16 24 O -0.52 -8.87 15.28 5.56 0.08 -8.79 16 25 C 0.10 0.64 5.96 -5.19 -0.03 0.61 16 26 N -0.30 -3.05 3.19 -63.74 -0.20 -3.26 16 27 C 0.16 1.37 12.79 -90.39 -1.16 0.22 16 28 N -0.31 -4.03 12.36 29.59 0.37 -3.67 16 29 N -0.08 -1.25 13.43 60.35 0.81 -0.44 16 30 N -0.06 -0.89 12.29 60.35 0.74 -0.14 16 31 C 0.11 0.82 5.37 -2.52 -0.01 0.81 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 33 H 0.08 2.16 6.51 -51.93 -0.34 1.82 16 34 H 0.03 0.76 5.19 -51.93 -0.27 0.49 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.56 5.35 -51.93 -0.28 0.29 16 37 H 0.08 0.99 5.84 -51.93 -0.30 0.69 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.51 5.60 -51.93 -0.29 1.22 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.14 0.28 8.08 -51.93 -0.42 -0.14 16 42 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.23 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -36.17 348.41 -7.35 -43.53 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.05 Total: -2.35 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.90 Total: 0.54 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 1.28 Total: -54.54 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.17 -7.35 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089771390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.164 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds