Wall clock time and date at job start Tue Mar 31 2020 17:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00197 * 2 1 4 4 H 1.48501 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46940 * 299.99693 * 3 2 1 6 6 H 1.48495 * 109.46996 * 60.00066 * 3 2 1 7 7 C 1.38811 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00315 * 189.10055 * 7 2 1 9 9 N 1.36946 * 119.99701 * 9.10366 * 7 2 1 10 10 C 1.48156 * 127.83674 * 15.56499 * 9 7 2 11 11 C 1.54387 * 104.57791 * 140.41462 * 10 9 7 12 12 H 1.09000 * 110.97672 * 263.35200 * 11 10 9 13 13 C 1.54145 * 105.00361 * 23.96058 * 11 10 9 14 14 H 1.09004 * 110.83031 * 240.13451 * 13 11 10 15 15 C 1.48148 * 127.83345 * 195.57178 * 9 7 2 16 16 C 1.53015 * 109.80392 * 116.87032 * 13 11 10 17 17 H 1.08997 * 109.64475 * 179.55537 * 16 13 11 18 18 C 1.53005 * 109.72075 * 300.69511 * 16 13 11 19 19 C 1.52911 * 110.00213 * 57.72922 * 18 16 13 20 20 C 1.53265 * 109.62030 * 2.72208 * 19 18 16 21 21 H 1.08995 * 110.52457 * 176.67684 * 20 19 18 22 22 N 1.47628 * 108.18054 * 55.53231 * 20 19 18 23 23 C 1.34773 * 122.01031 * 121.23258 * 22 20 19 24 24 O 1.21280 * 120.00269 * 359.97438 * 23 22 20 25 25 C 1.50706 * 119.99745 * 180.02562 * 23 22 20 26 26 N 1.46503 * 109.46943 * 179.97438 * 25 23 22 27 27 C 1.34594 * 126.43292 * 124.71000 * 26 25 23 28 28 N 1.31078 * 106.67363 * 179.87229 * 27 26 25 29 29 N 1.28841 * 107.99147 * 0.39094 * 28 27 26 30 30 N 1.28738 * 109.39752 * 359.75044 * 29 28 27 31 31 C 1.48654 * 115.31064 * 300.63892 * 22 20 19 32 32 H 0.97005 * 119.99881 * 0.02562 * 1 2 3 33 33 H 1.09000 * 110.41099 * 21.63790 * 10 9 7 34 34 H 1.08997 * 110.51460 * 259.23970 * 10 9 7 35 35 H 1.08993 * 110.40884 * 338.28569 * 15 9 7 36 36 H 1.08997 * 110.40762 * 100.72190 * 15 9 7 37 37 H 1.09004 * 108.60777 * 298.05063 * 18 16 13 38 38 H 1.08995 * 110.14530 * 178.38005 * 18 16 13 39 39 H 1.09002 * 109.44289 * 242.68634 * 19 18 16 40 40 H 1.08998 * 109.43962 * 122.75792 * 19 18 16 41 41 H 1.08997 * 109.46737 * 299.99693 * 25 23 22 42 42 H 1.08993 * 109.47315 * 59.99704 * 25 23 22 43 43 H 1.07998 * 126.66574 * 0.02562 * 27 26 25 44 44 H 1.08998 * 110.15197 * 241.58763 * 31 22 20 45 45 H 1.09000 * 109.74900 * 120.35490 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2080 0.1485 9 7 1.3384 -2.3807 -0.1866 10 6 -0.0344 -2.5710 -0.7102 11 6 0.0645 -3.8173 -1.6161 12 1 0.1940 -3.5316 -2.6600 13 6 1.2842 -4.5983 -1.0886 14 1 2.0416 -4.7050 -1.8652 15 6 1.8195 -3.7545 0.0888 16 6 0.8371 -5.9628 -0.5600 17 1 1.7024 -6.5159 -0.1949 18 6 -0.1809 -5.7719 0.5662 19 6 -1.3765 -4.9646 0.0592 20 6 -1.1997 -4.6653 -1.4334 21 1 -2.0716 -4.1406 -1.8239 22 7 -1.0067 -5.9467 -2.1405 23 6 -1.8326 -6.3502 -3.1262 24 8 -2.7687 -5.6533 -3.4563 25 6 -1.5936 -7.6679 -3.8174 26 7 -2.6203 -7.8754 -4.8416 27 6 -2.4081 -8.1214 -6.1478 28 7 -3.5887 -8.2445 -6.7039 29 7 -4.4794 -8.0743 -5.7887 30 7 -3.8977 -7.8511 -4.6621 31 6 0.1652 -6.7468 -1.6976 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3435 -1.7021 -1.2912 34 1 -0.7336 -2.7494 0.1068 35 1 2.9090 -3.7788 0.1092 36 1 1.4126 -4.1177 1.0325 37 1 0.3001 -5.2323 1.3821 38 1 -0.5258 -6.7403 0.9286 39 1 -1.4420 -4.0274 0.6119 40 1 -2.2911 -5.5384 0.2083 41 1 -0.6093 -7.6592 -4.2855 42 1 -1.6413 -8.4753 -3.0868 43 1 -1.4511 -8.2040 -6.6413 44 1 0.8642 -6.8778 -2.5236 45 1 -0.1684 -7.7188 -1.3343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089771390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:04 Heat of formation + Delta-G solvation = 110.117261 kcal Electronic energy + Delta-G solvation = -29633.017539 eV Core-core repulsion = 25688.661739 eV Total energy + Delta-G solvation = -3944.355800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.14181 -42.35440 -40.14001 -37.25541 -36.40649 -34.66447 -33.49818 -33.39032 -33.12917 -30.99795 -30.08093 -28.48276 -27.21079 -25.57128 -24.81530 -24.40810 -23.37178 -22.44019 -22.07052 -21.06911 -19.06415 -18.70676 -18.66309 -17.83849 -17.57470 -17.31206 -17.01123 -16.76257 -16.56872 -16.06340 -15.79854 -15.27778 -14.92124 -14.49000 -14.39582 -14.14646 -13.89828 -13.69746 -13.60955 -13.35914 -13.16042 -13.10406 -13.05530 -12.87027 -12.66793 -12.40371 -12.19295 -12.18313 -12.10450 -11.91126 -11.76885 -11.64589 -11.46579 -11.16926 -11.08949 -10.94501 -10.73255 -10.60695 -9.55702 -8.82999 -7.90795 -5.25285 0.28993 1.00129 1.27720 1.43310 1.44356 1.44910 1.54669 1.86739 2.47480 3.10117 3.29474 3.47275 3.52333 3.56728 3.69636 3.78243 3.87656 4.01812 4.02819 4.14588 4.20245 4.26243 4.32967 4.40520 4.42339 4.53072 4.58064 4.70439 4.74038 4.80322 4.85024 4.99253 5.01829 5.06037 5.18170 5.21878 5.28444 5.34041 5.37303 5.44292 5.50255 5.60714 5.69846 5.76358 6.20117 6.40843 7.01129 7.02624 7.60055 7.72457 8.50406 9.22360 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020117 B = 0.002977 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.502715 B = 9403.916369 C =10054.003669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.231 4.231 8 H 0.082 0.918 9 N -0.622 5.622 10 C 0.166 3.834 11 C -0.102 4.102 12 H 0.049 0.951 13 C -0.078 4.078 14 H 0.087 0.913 15 C 0.120 3.880 16 C -0.081 4.081 17 H 0.128 0.872 18 C -0.111 4.111 19 C -0.129 4.129 20 C 0.162 3.838 21 H 0.057 0.943 22 N -0.595 5.595 23 C 0.497 3.503 24 O -0.585 6.585 25 C 0.102 3.898 26 N -0.299 5.299 27 C 0.184 3.816 28 N -0.348 5.348 29 N -0.121 5.121 30 N -0.098 5.098 31 C 0.104 3.896 32 H 0.245 0.755 33 H 0.030 0.970 34 H 0.017 0.983 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.203 0.797 42 H 0.174 0.826 43 H 0.297 0.703 44 H 0.113 0.887 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 -24.099 -4.703 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.261 4.261 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.360 4.360 8 H 0.100 0.900 9 N -0.346 5.346 10 C 0.040 3.960 11 C -0.123 4.123 12 H 0.068 0.932 13 C -0.098 4.098 14 H 0.105 0.895 15 C -0.005 4.005 16 C -0.099 4.099 17 H 0.146 0.854 18 C -0.148 4.148 19 C -0.167 4.167 20 C 0.058 3.942 21 H 0.075 0.925 22 N -0.328 5.328 23 C 0.284 3.716 24 O -0.464 6.464 25 C -0.021 4.021 26 N -0.101 5.101 27 C -0.114 4.114 28 N -0.196 5.196 29 N -0.116 5.116 30 N -0.085 5.085 31 C -0.015 4.015 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.220 0.780 42 H 0.191 0.809 43 H 0.312 0.688 44 H 0.131 0.869 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.094 -23.542 -4.845 24.569 hybrid contribution 0.597 2.308 0.311 2.405 sum 5.691 -21.233 -4.534 22.446 Atomic orbital electron populations 1.70113 1.06568 1.25252 1.57777 1.25696 0.96358 1.01240 1.02776 0.85088 0.78555 0.79698 0.76488 1.18511 1.22376 1.22120 1.19410 0.91281 0.83790 1.41539 0.90022 1.45215 1.13837 1.01538 1.73962 1.21511 0.86793 0.93873 0.93861 1.22409 0.95396 0.96102 0.98421 0.93208 1.22067 0.95552 0.94608 0.97565 0.89458 1.22170 0.97494 0.84431 0.96421 1.21432 0.99110 0.94467 0.94939 0.85368 1.21579 0.94525 1.00555 0.98159 1.21930 0.99863 1.00801 0.94078 1.20923 0.96686 0.84043 0.92540 0.92506 1.48836 1.28733 1.20774 1.34491 1.20865 0.82034 0.88370 0.80341 1.90848 1.32481 1.57606 1.65494 1.22568 0.91109 0.96939 0.91512 1.48456 1.05817 1.45128 1.10694 1.28807 1.02821 0.98500 0.81244 1.74867 0.98444 1.20459 1.25797 1.78637 1.23886 1.16066 0.92969 1.78938 0.91172 1.16677 1.21699 1.22785 0.85830 0.94584 0.98341 0.94565 0.95164 0.96520 0.93181 0.94332 0.92287 0.88858 0.92684 0.91748 0.77988 0.80905 0.68833 0.86890 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.65 10.86 21.65 0.24 -57.41 16 2 C -0.07 -3.81 5.40 84.86 0.46 -3.35 16 3 Si 0.97 45.51 29.56 68.60 2.03 47.54 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.23 -12.56 10.35 84.03 0.87 -11.69 16 8 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 9 N -0.62 -30.21 3.38 -688.07 -2.33 -32.53 16 10 C 0.17 7.85 5.18 86.53 0.45 8.30 16 11 C -0.10 -3.51 3.35 -9.83 -0.03 -3.54 16 12 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 13 C -0.08 -2.00 3.13 -9.92 -0.03 -2.03 16 14 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 15 C 0.12 4.16 6.54 86.54 0.57 4.73 16 16 C -0.08 -1.17 2.87 -10.57 -0.03 -1.20 16 17 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 18 C -0.11 -2.13 5.31 30.57 0.16 -1.96 16 19 C -0.13 -3.53 5.55 30.65 0.17 -3.36 16 20 C 0.16 4.85 3.07 44.97 0.14 4.99 16 21 H 0.06 2.18 7.19 -2.39 -0.02 2.16 16 22 N -0.60 -11.31 2.85 -787.35 -2.25 -13.56 16 23 C 0.50 10.33 7.78 87.66 0.68 11.01 16 24 O -0.58 -20.50 15.28 -3.03 -0.05 -20.55 16 25 C 0.10 0.71 5.96 85.63 0.51 1.22 16 26 N -0.30 -5.05 3.19 -355.56 -1.14 -6.18 16 27 C 0.18 2.46 12.79 180.27 2.31 4.76 16 28 N -0.35 -8.67 12.36 -60.29 -0.75 -9.41 16 29 N -0.12 -3.79 13.43 37.01 0.50 -3.30 16 30 N -0.10 -2.77 12.29 37.02 0.45 -2.32 16 31 C 0.10 0.79 5.37 86.18 0.46 1.25 16 32 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 33 H 0.03 1.72 6.51 -2.39 -0.02 1.70 16 34 H 0.02 0.85 5.19 -2.39 -0.01 0.84 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.32 5.35 -2.39 -0.01 1.31 16 37 H 0.06 1.38 5.84 -2.38 -0.01 1.36 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.93 5.60 -2.39 -0.01 1.92 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.20 -1.08 8.08 -2.39 -0.02 -1.10 16 42 H 0.17 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.30 -0.49 8.06 -2.91 -0.02 -0.52 16 44 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -95.04 348.41 4.42 -90.62 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: 1.02 Total: -2.05 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.68 Total: 9.14 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.27 Total: -124.71 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.05 Total: -20.55 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -95.04 4.42 -90.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089771390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.742 kcal (2) G-P(sol) polarization free energy of solvation -95.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds