Wall clock time and date at job start Tue Mar 31 2020 17:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00300 * 2 1 4 4 H 1.48498 * 109.47217 * 270.00177 * 3 2 1 5 5 H 1.48503 * 109.47381 * 29.99829 * 3 2 1 6 6 H 1.48502 * 109.47358 * 150.00151 * 3 2 1 7 7 C 1.38810 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00196 * 189.09634 * 7 2 1 9 9 N 1.36941 * 119.99903 * 9.09791 * 7 2 1 10 10 C 1.48152 * 127.83604 * 15.56858 * 9 7 2 11 11 C 1.54387 * 104.58003 * 140.40849 * 10 9 7 12 12 H 1.09001 * 110.81691 * 263.73983 * 11 10 9 13 13 C 1.55259 * 104.68921 * 23.96529 * 11 10 9 14 14 H 1.09000 * 110.86415 * 239.11336 * 13 11 10 15 15 C 1.48145 * 127.83734 * 195.57027 * 9 7 2 16 16 C 1.53287 * 108.76059 * 116.87208 * 13 11 10 17 17 H 1.09009 * 110.48811 * 181.90290 * 16 13 11 18 18 C 1.53314 * 109.20682 * 60.17624 * 16 13 11 19 19 C 1.52940 * 109.59317 * 299.10504 * 18 16 13 20 20 C 1.52983 * 109.06697 * 141.57222 * 11 10 9 21 21 H 1.09003 * 109.63385 * 66.11800 * 20 11 10 22 22 C 1.53607 * 109.29970 * 305.30415 * 20 11 10 23 23 N 1.47642 * 106.73359 * 300.59870 * 22 20 11 24 24 C 1.34766 * 122.05805 * 179.84550 * 23 22 20 25 25 O 1.21288 * 119.99916 * 179.71100 * 24 23 22 26 26 C 1.50698 * 120.00561 * 359.71246 * 24 23 22 27 27 N 1.46506 * 109.47396 * 180.02562 * 26 24 23 28 28 C 1.34594 * 126.43916 * 124.99694 * 27 26 24 29 29 N 1.31079 * 106.67743 * 180.20661 * 28 27 26 30 30 N 1.28839 * 107.98796 * 359.63240 * 29 28 27 31 31 N 1.28742 * 109.39845 * 0.38018 * 30 29 28 32 32 H 0.97003 * 119.99705 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.41611 * 21.63498 * 10 9 7 34 34 H 1.08995 * 110.51724 * 259.23563 * 10 9 7 35 35 H 1.09003 * 110.40745 * 338.29720 * 15 9 7 36 36 H 1.09002 * 110.40760 * 100.60623 * 15 9 7 37 37 H 1.09001 * 109.45318 * 59.14179 * 18 16 13 38 38 H 1.09003 * 109.45073 * 179.07065 * 18 16 13 39 39 H 1.09001 * 109.38160 * 120.81367 * 19 18 16 40 40 H 1.09004 * 109.38040 * 240.48951 * 19 18 16 41 41 H 1.09001 * 110.12198 * 181.22598 * 22 20 11 42 42 H 1.08997 * 109.87085 * 59.83836 * 22 20 11 43 43 H 1.08999 * 109.47179 * 59.99903 * 26 24 23 44 44 H 1.09005 * 109.47065 * 299.99729 * 26 24 23 45 45 H 1.08001 * 126.66078 * 359.94778 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2080 0.1484 9 7 1.3384 -2.3807 -0.1865 10 6 -0.0344 -2.5710 -0.7100 11 6 0.0644 -3.8172 -1.6159 12 1 0.2006 -3.5286 -2.6582 13 6 1.2941 -4.5980 -1.0787 14 1 2.0467 -4.7206 -1.8576 15 6 1.8194 -3.7545 0.0889 16 6 0.8230 -5.9586 -0.5529 17 1 1.6611 -6.5181 -0.1372 18 6 0.1691 -6.7424 -1.6968 19 6 -1.0423 -5.9700 -2.2211 20 6 -1.2019 -4.6590 -1.4477 21 1 -2.0609 -4.1092 -1.8322 22 6 -1.4032 -4.9814 0.0406 23 7 -0.2031 -5.7194 0.4818 24 6 -0.0557 -6.1529 1.7493 25 8 0.9438 -6.7605 2.0701 26 6 -1.1328 -5.8829 2.7682 27 7 -0.7371 -6.4509 4.0594 28 6 -0.6561 -5.7932 5.2309 29 7 -0.2634 -6.6665 6.1262 30 7 -0.1187 -7.8029 5.5367 31 7 -0.4012 -7.6755 4.2871 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3436 -1.7021 -1.2911 34 1 -0.7335 -2.7493 0.1069 35 1 2.9090 -3.7788 0.1094 36 1 1.4142 -4.1169 1.0337 37 1 0.8902 -6.8774 -2.5030 38 1 -0.1527 -7.7176 -1.3312 39 1 -0.9012 -5.7509 -3.2795 40 1 -1.9397 -6.5757 -2.0951 41 1 -2.2910 -5.5997 0.1736 42 1 -1.5027 -4.0571 0.6097 43 1 -2.0661 -6.3405 2.4402 44 1 -1.2726 -4.8069 2.8726 45 1 -0.8689 -4.7479 5.3997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089771396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:11 Heat of formation + Delta-G solvation = 132.332056 kcal Electronic energy + Delta-G solvation = -30266.331815 eV Core-core repulsion = 26322.939321 eV Total energy + Delta-G solvation = -3943.392494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.16905 -41.33400 -38.83035 -35.78301 -35.43727 -33.39032 -32.45066 -32.34530 -31.99640 -29.43687 -28.99821 -26.81201 -25.45113 -24.94599 -23.83864 -23.57380 -22.15660 -20.84250 -20.63491 -20.13243 -18.06445 -17.70646 -17.12737 -16.63409 -16.55380 -16.26104 -16.07647 -15.58611 -14.99763 -14.78734 -14.40041 -14.19247 -13.61632 -13.47894 -13.21447 -13.11608 -12.81719 -12.63987 -12.32410 -12.15570 -11.98678 -11.96435 -11.70973 -11.29098 -11.21284 -11.17792 -11.13756 -10.92056 -10.78216 -10.68932 -10.40888 -10.11994 -10.05064 -9.95990 -9.77074 -9.67211 -9.61953 -8.73457 -8.53182 -6.94115 -5.89745 -3.22891 1.20589 1.76117 2.27252 2.39863 2.82318 3.31222 3.37902 3.38649 3.93107 4.19638 4.23363 4.36988 4.50648 4.60677 4.72215 4.76332 4.80556 4.99377 5.11845 5.24948 5.31415 5.37690 5.38271 5.45272 5.51420 5.63585 5.65594 5.68647 5.79294 5.84569 5.86512 5.96405 5.99936 6.13589 6.19341 6.24545 6.34700 6.42829 6.54088 6.70543 6.86071 7.20896 7.33071 7.42341 7.62324 7.96637 8.11690 8.60287 9.02750 9.65005 10.42033 11.24307 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.004417 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.933623 B = 6337.896176 C = 8027.086127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.074 0.926 9 N -0.594 5.594 10 C 0.160 3.840 11 C -0.105 4.105 12 H 0.072 0.928 13 C -0.107 4.107 14 H 0.080 0.920 15 C 0.135 3.865 16 C 0.153 3.847 17 H 0.099 0.901 18 C -0.125 4.125 19 C -0.112 4.112 20 C -0.087 4.087 21 H 0.089 0.911 22 C 0.102 3.898 23 N -0.589 5.589 24 C 0.511 3.489 25 O -0.519 6.519 26 C 0.096 3.904 27 N -0.297 5.297 28 C 0.163 3.837 29 N -0.309 5.309 30 N -0.084 5.084 31 N -0.065 5.065 32 H 0.253 0.747 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.041 0.959 36 H 0.022 0.978 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.133 0.867 44 H 0.145 0.855 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.315 -10.156 -2.552 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.092 0.908 9 N -0.318 5.318 10 C 0.034 3.966 11 C -0.126 4.126 12 H 0.091 0.909 13 C -0.127 4.127 14 H 0.099 0.901 15 C 0.009 3.991 16 C 0.051 3.949 17 H 0.117 0.883 18 C -0.164 4.164 19 C -0.150 4.150 20 C -0.106 4.106 21 H 0.107 0.893 22 C -0.020 4.020 23 N -0.323 5.323 24 C 0.295 3.705 25 O -0.395 6.395 26 C -0.029 4.029 27 N -0.099 5.099 28 C -0.135 4.135 29 N -0.157 5.157 30 N -0.078 5.078 31 N -0.052 5.052 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.150 0.850 44 H 0.163 0.837 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.388 -11.494 -1.861 13.790 hybrid contribution 0.037 2.021 -0.561 2.098 sum -7.351 -9.473 -2.422 12.232 Atomic orbital electron populations 1.69872 1.04994 1.25316 1.56265 1.24827 0.95628 0.97799 1.01838 0.86150 0.78807 0.83337 0.77684 1.21511 1.21649 1.20586 1.19013 0.90806 0.82437 1.42972 0.90788 1.44920 1.13451 0.99835 1.73568 1.21712 0.87085 0.93827 0.93956 1.22525 0.92054 0.97136 1.00848 0.90927 1.22554 0.97804 0.93290 0.99091 0.90141 1.21416 0.97013 0.86612 0.94087 1.21408 0.90236 0.96507 0.86791 0.88287 1.21890 0.98125 0.98497 0.97840 1.21525 0.97714 0.95890 0.99853 1.21352 0.99909 0.96201 0.93102 0.89297 1.22315 0.86223 0.96360 0.97125 1.48330 1.20862 1.54939 1.08198 1.19824 0.87587 0.80232 0.82809 1.90822 1.29730 1.40379 1.78542 1.22071 0.99396 1.02351 0.79118 1.48148 1.44005 1.07421 1.10309 1.27779 1.01687 1.02833 0.81219 1.74975 1.16951 0.97035 1.26728 1.78631 1.15954 1.16140 0.97074 1.78967 1.13556 0.99597 1.13053 0.93673 0.89824 0.95815 0.94071 0.96050 0.90778 0.91880 0.91579 0.92223 0.91465 0.89299 0.84964 0.83736 0.74813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.80 10.86 55.49 0.60 -24.20 16 2 C 0.00 -0.11 5.40 -17.43 -0.09 -0.20 16 3 Si 0.91 21.05 29.56 -169.99 -5.03 16.02 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.22 -5.91 10.35 -15.06 -0.16 -6.07 16 8 H 0.07 1.94 7.84 -52.49 -0.41 1.53 16 9 N -0.59 -13.90 3.38 -169.51 -0.57 -14.47 16 10 C 0.16 3.24 5.20 -2.41 -0.01 3.23 16 11 C -0.11 -1.61 3.15 -88.70 -0.28 -1.89 16 12 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.65 3.19 -89.11 -0.28 -1.94 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.14 2.67 6.56 -2.97 -0.02 2.65 16 16 C 0.15 2.03 2.92 -66.98 -0.20 1.84 16 17 H 0.10 1.47 7.20 -51.92 -0.37 1.10 16 18 C -0.13 -1.32 5.86 -26.60 -0.16 -1.47 16 19 C -0.11 -1.07 5.65 -26.74 -0.15 -1.22 16 20 C -0.09 -0.97 2.87 -90.29 -0.26 -1.23 16 21 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 22 C 0.10 1.05 4.94 -3.10 -0.02 1.04 16 23 N -0.59 -7.33 1.91 -163.59 -0.31 -7.64 16 24 C 0.51 6.90 6.98 -10.99 -0.08 6.82 16 25 O -0.52 -9.32 15.28 5.55 0.08 -9.24 16 26 C 0.10 0.90 5.91 -5.19 -0.03 0.87 16 27 N -0.30 -3.69 3.19 -63.73 -0.20 -3.89 16 28 C 0.16 1.85 12.79 -90.39 -1.16 0.70 16 29 N -0.31 -4.64 12.36 29.59 0.37 -4.28 16 30 N -0.08 -1.41 13.43 60.35 0.81 -0.60 16 31 N -0.07 -1.03 12.29 60.35 0.74 -0.29 16 32 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.08 1.99 6.51 -51.93 -0.34 1.65 16 34 H 0.02 0.48 5.31 -51.93 -0.28 0.21 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.02 0.44 6.28 -51.93 -0.33 0.12 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.09 1.02 5.78 -51.93 -0.30 0.72 16 43 H 0.13 0.80 8.12 -51.93 -0.42 0.38 16 44 H 0.14 0.96 8.06 -51.93 -0.42 0.54 16 45 H 0.24 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -34.63 350.11 -7.35 -41.97 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.23 Total: -1.77 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.89 Total: 3.11 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 1.43 Total: -55.37 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.63 -7.35 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089771396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.305 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds