Wall clock time and date at job start Tue Mar 31 2020 17:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00300 * 2 1 4 4 H 1.48498 * 109.47217 * 270.00177 * 3 2 1 5 5 H 1.48503 * 109.47381 * 29.99829 * 3 2 1 6 6 H 1.48502 * 109.47358 * 150.00151 * 3 2 1 7 7 C 1.38810 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00196 * 189.09634 * 7 2 1 9 9 N 1.36941 * 119.99903 * 9.09791 * 7 2 1 10 10 C 1.48152 * 127.83604 * 15.56858 * 9 7 2 11 11 C 1.54387 * 104.58003 * 140.40849 * 10 9 7 12 12 H 1.09001 * 110.81691 * 263.73983 * 11 10 9 13 13 C 1.55259 * 104.68921 * 23.96529 * 11 10 9 14 14 H 1.09000 * 110.86415 * 239.11336 * 13 11 10 15 15 C 1.48145 * 127.83734 * 195.57027 * 9 7 2 16 16 C 1.53287 * 108.76059 * 116.87208 * 13 11 10 17 17 H 1.09009 * 110.48811 * 181.90290 * 16 13 11 18 18 C 1.53314 * 109.20682 * 60.17624 * 16 13 11 19 19 C 1.52940 * 109.59317 * 299.10504 * 18 16 13 20 20 C 1.52983 * 109.06697 * 141.57222 * 11 10 9 21 21 H 1.09003 * 109.63385 * 66.11800 * 20 11 10 22 22 C 1.53607 * 109.29970 * 305.30415 * 20 11 10 23 23 N 1.47642 * 106.73359 * 300.59870 * 22 20 11 24 24 C 1.34766 * 122.05805 * 179.84550 * 23 22 20 25 25 O 1.21288 * 119.99916 * 179.71100 * 24 23 22 26 26 C 1.50698 * 120.00561 * 359.71246 * 24 23 22 27 27 N 1.46506 * 109.47396 * 180.02562 * 26 24 23 28 28 C 1.34594 * 126.43916 * 124.99694 * 27 26 24 29 29 N 1.31079 * 106.67743 * 180.20661 * 28 27 26 30 30 N 1.28839 * 107.98796 * 359.63240 * 29 28 27 31 31 N 1.28742 * 109.39845 * 0.38018 * 30 29 28 32 32 H 0.97003 * 119.99705 * 0.02562 * 1 2 3 33 33 H 1.09003 * 110.41611 * 21.63498 * 10 9 7 34 34 H 1.08995 * 110.51724 * 259.23563 * 10 9 7 35 35 H 1.09003 * 110.40745 * 338.29720 * 15 9 7 36 36 H 1.09002 * 110.40760 * 100.60623 * 15 9 7 37 37 H 1.09001 * 109.45318 * 59.14179 * 18 16 13 38 38 H 1.09003 * 109.45073 * 179.07065 * 18 16 13 39 39 H 1.09001 * 109.38160 * 120.81367 * 19 18 16 40 40 H 1.09004 * 109.38040 * 240.48951 * 19 18 16 41 41 H 1.09001 * 110.12198 * 181.22598 * 22 20 11 42 42 H 1.08997 * 109.87085 * 59.83836 * 22 20 11 43 43 H 1.08999 * 109.47179 * 59.99903 * 26 24 23 44 44 H 1.09005 * 109.47065 * 299.99729 * 26 24 23 45 45 H 1.08001 * 126.66078 * 359.94778 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2080 0.1484 9 7 1.3384 -2.3807 -0.1865 10 6 -0.0344 -2.5710 -0.7100 11 6 0.0644 -3.8172 -1.6159 12 1 0.2006 -3.5286 -2.6582 13 6 1.2941 -4.5980 -1.0787 14 1 2.0467 -4.7206 -1.8576 15 6 1.8194 -3.7545 0.0889 16 6 0.8230 -5.9586 -0.5529 17 1 1.6611 -6.5181 -0.1372 18 6 0.1691 -6.7424 -1.6968 19 6 -1.0423 -5.9700 -2.2211 20 6 -1.2019 -4.6590 -1.4477 21 1 -2.0609 -4.1092 -1.8322 22 6 -1.4032 -4.9814 0.0406 23 7 -0.2031 -5.7194 0.4818 24 6 -0.0557 -6.1529 1.7493 25 8 0.9438 -6.7605 2.0701 26 6 -1.1328 -5.8829 2.7682 27 7 -0.7371 -6.4509 4.0594 28 6 -0.6561 -5.7932 5.2309 29 7 -0.2634 -6.6665 6.1262 30 7 -0.1187 -7.8029 5.5367 31 7 -0.4012 -7.6755 4.2871 32 1 -0.4850 0.8401 -0.0004 33 1 -0.3436 -1.7021 -1.2911 34 1 -0.7335 -2.7493 0.1069 35 1 2.9090 -3.7788 0.1094 36 1 1.4142 -4.1169 1.0337 37 1 0.8902 -6.8774 -2.5030 38 1 -0.1527 -7.7176 -1.3312 39 1 -0.9012 -5.7509 -3.2795 40 1 -1.9397 -6.5757 -2.0951 41 1 -2.2910 -5.5997 0.1736 42 1 -1.5027 -4.0571 0.6097 43 1 -2.0661 -6.3405 2.4402 44 1 -1.2726 -4.8069 2.8726 45 1 -0.8689 -4.7479 5.3997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089771396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:10 Heat of formation + Delta-G solvation = 109.786691 kcal Electronic energy + Delta-G solvation = -30267.309455 eV Core-core repulsion = 26322.939321 eV Total energy + Delta-G solvation = -3944.370134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -45.18330 -42.41235 -39.94798 -37.27208 -36.44118 -34.51440 -33.94624 -33.47444 -33.14049 -30.83329 -30.06006 -28.18853 -26.92533 -26.16577 -24.86016 -24.56384 -23.29127 -22.25535 -21.89358 -21.25475 -19.09703 -18.76970 -18.64566 -17.71533 -17.61987 -17.36722 -17.05008 -16.79338 -16.47227 -16.02067 -15.62231 -15.31013 -14.95523 -14.83726 -14.35491 -14.16143 -14.03166 -13.66087 -13.60312 -13.35988 -13.17093 -13.07058 -12.89537 -12.78622 -12.64890 -12.53506 -12.24152 -12.20846 -12.13554 -11.88479 -11.78885 -11.77741 -11.48927 -11.22619 -11.06422 -10.92652 -10.75349 -10.58050 -9.53747 -8.82673 -7.90348 -5.23658 0.24178 0.92768 1.22411 1.42367 1.45547 1.46916 1.54483 1.89369 2.47783 3.06568 3.28413 3.42801 3.46595 3.56055 3.72623 3.76689 3.86100 3.93058 3.96026 4.10604 4.20749 4.31883 4.34796 4.38193 4.44068 4.51696 4.60212 4.66767 4.68805 4.76705 4.83427 4.95446 5.04471 5.09143 5.14423 5.18826 5.22812 5.33924 5.39919 5.42640 5.50660 5.57976 5.69710 5.81300 6.23647 6.37361 6.98085 7.07479 7.55445 7.71620 8.50479 9.21722 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.004417 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.933623 B = 6337.896176 C = 8027.086127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.063 0.937 9 N -0.619 5.619 10 C 0.165 3.835 11 C -0.093 4.093 12 H 0.068 0.932 13 C -0.098 4.098 14 H 0.081 0.919 15 C 0.137 3.863 16 C 0.156 3.844 17 H 0.076 0.924 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.083 4.083 21 H 0.106 0.894 22 C 0.099 3.901 23 N -0.588 5.588 24 C 0.502 3.498 25 O -0.575 6.575 26 C 0.096 3.904 27 N -0.296 5.296 28 C 0.179 3.821 29 N -0.342 5.342 30 N -0.117 5.117 31 N -0.089 5.089 32 H 0.250 0.750 33 H 0.045 0.955 34 H 0.028 0.972 35 H 0.021 0.979 36 H 0.016 0.984 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.175 0.825 44 H 0.178 0.822 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 -10.364 -3.608 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.795 3.205 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.081 0.919 9 N -0.343 5.343 10 C 0.041 3.959 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.118 4.118 14 H 0.100 0.900 15 C 0.011 3.989 16 C 0.052 3.948 17 H 0.094 0.906 18 C -0.156 4.156 19 C -0.141 4.141 20 C -0.101 4.101 21 H 0.125 0.875 22 C -0.022 4.022 23 N -0.320 5.320 24 C 0.289 3.711 25 O -0.454 6.454 26 C -0.027 4.027 27 N -0.098 5.098 28 C -0.118 4.118 29 N -0.190 5.190 30 N -0.111 5.111 31 N -0.077 5.077 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.192 0.808 44 H 0.195 0.805 45 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -9.861 -11.711 -2.948 15.591 hybrid contribution 0.860 2.177 -0.259 2.355 sum -9.001 -9.535 -3.207 13.498 Atomic orbital electron populations 1.70010 1.05773 1.25548 1.56887 1.25447 0.96473 1.00194 1.02102 0.85272 0.77759 0.79967 0.77464 1.21367 1.21589 1.20347 1.19209 0.90810 0.84154 1.42978 0.91918 1.45181 1.14761 1.00200 1.74162 1.21658 0.85536 0.94506 0.94250 1.22368 0.94249 0.95524 0.99207 0.91325 1.22418 0.98019 0.94031 0.97363 0.90049 1.21464 0.95891 0.85856 0.95675 1.21260 0.90552 0.94882 0.88082 0.90603 1.21851 0.98678 0.98411 0.96665 1.21495 0.98143 0.94733 0.99773 1.21363 0.97852 0.96592 0.94330 0.87541 1.22543 0.86835 0.96722 0.96097 1.48430 1.21172 1.54505 1.07907 1.20520 0.87792 0.79273 0.83482 1.90807 1.32192 1.42929 1.79465 1.22477 0.99021 1.04489 0.76748 1.48357 1.43268 1.06615 1.11525 1.28657 0.99093 1.03964 0.80131 1.74883 1.18462 0.97382 1.28224 1.78594 1.17346 1.17455 0.97734 1.78882 1.14406 1.01549 1.12821 0.94027 0.93690 0.95437 0.96083 0.96656 0.90092 0.91060 0.90824 0.89461 0.86598 0.90266 0.80764 0.80487 0.70032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.94 10.86 21.65 0.24 -50.70 16 2 C -0.05 -2.53 5.40 84.86 0.46 -2.07 16 3 Si 0.97 43.67 29.56 68.60 2.03 45.70 16 4 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.11 10.35 84.03 0.87 -12.24 16 8 H 0.06 3.42 7.84 -2.91 -0.02 3.39 16 9 N -0.62 -29.55 3.38 -690.22 -2.33 -31.88 16 10 C 0.17 6.69 5.20 86.53 0.45 7.14 16 11 C -0.09 -2.72 3.15 -9.55 -0.03 -2.75 16 12 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 13 C -0.10 -2.99 3.19 -9.82 -0.03 -3.02 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.14 5.53 6.56 86.17 0.57 6.10 16 16 C 0.16 3.92 2.92 44.97 0.13 4.05 16 17 H 0.08 2.29 7.20 -2.38 -0.02 2.27 16 18 C -0.12 -2.10 5.86 30.68 0.18 -1.92 16 19 C -0.10 -1.50 5.65 30.59 0.17 -1.32 16 20 C -0.08 -1.54 2.87 -10.58 -0.03 -1.57 16 21 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 22 C 0.10 1.63 4.94 86.36 0.43 2.05 16 23 N -0.59 -13.17 1.91 -789.87 -1.51 -14.69 16 24 C 0.50 12.67 6.98 87.66 0.61 13.28 16 25 O -0.57 -20.71 15.28 -3.05 -0.05 -20.76 16 26 C 0.10 1.46 5.91 85.63 0.51 1.97 16 27 N -0.30 -6.75 3.19 -355.54 -1.14 -7.89 16 28 C 0.18 3.68 12.79 180.27 2.31 5.99 16 29 N -0.34 -10.09 12.36 -60.29 -0.74 -10.83 16 30 N -0.12 -3.99 13.43 37.01 0.50 -3.49 16 31 N -0.09 -2.80 12.29 37.02 0.45 -2.34 16 32 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 33 H 0.04 2.16 6.51 -2.39 -0.02 2.15 16 34 H 0.03 1.09 5.31 -2.39 -0.01 1.08 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.02 0.65 6.28 -2.39 -0.01 0.63 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.12 0.91 8.12 -2.39 -0.02 0.89 16 42 H 0.08 1.52 5.78 -2.39 -0.01 1.50 16 43 H 0.18 1.19 8.12 -2.39 -0.02 1.17 16 44 H 0.18 1.55 8.06 -2.38 -0.02 1.53 16 45 H 0.28 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -81.34 350.11 5.05 -76.29 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.02 Total: 4.91 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 6.59 Total: 15.69 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -4.54 Total: -121.82 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -81.34 5.05 -76.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089771396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.077 kcal (2) G-P(sol) polarization free energy of solvation -81.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds