Wall clock time and date at job start Tue Mar 31 2020 17:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48508 * 109.46892 * 274.81388 * 3 2 1 5 5 H 1.48496 * 109.47063 * 34.81144 * 3 2 1 6 6 H 1.48497 * 109.47074 * 154.81355 * 3 2 1 7 7 C 1.38811 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99920 * 188.85723 * 7 2 1 9 9 N 1.36930 * 120.00068 * 8.85181 * 7 2 1 10 10 C 1.52327 * 125.19240 * 8.76448 * 9 7 2 11 11 C 1.48196 * 103.03329 * 176.13109 * 10 9 7 12 12 H 1.09000 * 102.83916 * 285.20279 * 11 10 9 13 13 C 1.58010 * 104.89425 * 30.37786 * 11 10 9 14 14 H 1.09000 * 111.79051 * 71.48566 * 13 11 10 15 15 C 1.49483 * 125.92853 * 187.78537 * 9 7 2 16 16 C 1.52723 * 103.66853 * 191.27162 * 13 11 10 17 17 H 1.09005 * 114.33090 * 156.13678 * 16 13 11 18 18 C 1.54713 * 108.18218 * 28.21088 * 16 13 11 19 19 C 1.53905 * 109.18122 * 285.16523 * 18 16 13 20 20 C 1.48886 * 132.34610 * 162.85835 * 11 10 9 21 21 H 1.08996 * 113.32408 * 21.68735 * 20 11 10 22 22 C 1.55212 * 109.51972 * 254.10074 * 20 11 10 23 23 N 1.48653 * 106.24322 * 291.21842 * 22 20 11 24 24 C 1.34773 * 123.11998 * 213.47988 * 23 22 20 25 25 O 1.21281 * 119.99916 * 179.70652 * 24 23 22 26 26 C 1.50697 * 119.99912 * 359.70561 * 24 23 22 27 27 N 1.46500 * 109.47087 * 180.02562 * 26 24 23 28 28 C 1.34591 * 126.43845 * 124.71616 * 27 26 24 29 29 N 1.31078 * 106.68180 * 180.26346 * 28 27 26 30 30 N 1.28842 * 107.98545 * 359.97438 * 29 28 27 31 31 N 1.28734 * 109.39829 * 0.02562 * 30 29 28 32 32 H 0.96997 * 119.99800 * 359.97438 * 1 2 3 33 33 H 1.08998 * 112.51238 * 57.17270 * 10 9 7 34 34 H 1.09001 * 109.66252 * 293.75417 * 10 9 7 35 35 H 1.08994 * 110.68417 * 36.15137 * 15 9 7 36 36 H 1.09005 * 110.68126 * 272.98427 * 15 9 7 37 37 H 1.09004 * 109.51619 * 45.06787 * 18 16 13 38 38 H 1.08992 * 109.52490 * 165.24975 * 18 16 13 39 39 H 1.09000 * 110.08183 * 156.15524 * 19 18 16 40 40 H 1.08996 * 110.07946 * 277.76014 * 19 18 16 41 41 H 1.08993 * 110.12622 * 171.99131 * 22 20 11 42 42 H 1.09001 * 109.97439 * 50.36695 * 22 20 11 43 43 H 1.09005 * 109.47179 * 60.00171 * 26 24 23 44 44 H 1.08999 * 109.47387 * 300.00135 * 26 24 23 45 45 H 1.08007 * 126.66491 * 0.24028 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5023 2.6211 0.7992 6 1 3.5950 1.4129 0.5958 7 6 2.0103 -1.2022 -0.0005 8 1 3.0806 -1.2078 0.1435 9 7 1.3379 -2.3809 -0.1835 10 6 -0.1271 -2.5030 -0.5827 11 6 -0.3115 -3.9657 -0.7336 12 1 0.1891 -4.1767 -1.6786 13 6 0.7019 -4.6109 0.2927 14 1 0.3797 -4.4674 1.3240 15 6 1.9177 -3.7518 -0.0468 16 6 0.7026 -6.0912 -0.0830 17 1 1.6042 -6.6287 0.2111 18 6 0.3700 -6.2071 -1.5895 19 6 -1.1323 -5.9451 -1.7973 20 6 -1.5274 -4.8236 -0.7811 21 1 -2.4291 -4.2791 -1.0612 22 6 -1.6683 -5.5980 0.5566 23 7 -0.5516 -6.5786 0.5891 24 6 -0.6553 -7.7939 1.1624 25 8 0.2912 -8.5522 1.1515 26 6 -1.9471 -8.2105 1.8170 27 7 -1.8046 -9.5630 2.3618 28 6 -2.0272 -9.9397 3.6346 29 7 -1.7787 -11.2253 3.6954 30 7 -1.4226 -11.6176 2.5210 31 7 -1.4370 -10.6157 1.7128 32 1 -0.4850 0.8400 0.0004 33 1 -0.3482 -1.9925 -1.5200 34 1 -0.7588 -2.1201 0.2189 35 1 2.6482 -3.7820 0.7616 36 1 2.3674 -4.0751 -0.9856 37 1 0.9486 -5.4711 -2.1478 38 1 0.6171 -7.2087 -1.9410 39 1 -1.3157 -5.6074 -2.8173 40 1 -1.7019 -6.8519 -1.5939 41 1 -2.6254 -6.1185 0.5896 42 1 -1.5860 -4.9082 1.3966 43 1 -2.7490 -8.1985 1.0787 44 1 -2.1857 -7.5175 2.6238 45 1 -2.3479 -9.3058 4.4481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089771398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:17 Heat of formation + Delta-G solvation = 176.242097 kcal Electronic energy + Delta-G solvation = -29538.109235 eV Core-core repulsion = 25596.620824 eV Total energy + Delta-G solvation = -3941.488412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.36351 -41.73191 -39.17805 -35.93998 -35.61616 -33.33651 -32.61403 -32.15826 -31.44852 -29.54070 -28.89725 -27.63523 -25.62631 -24.23542 -24.02983 -23.63256 -22.16715 -21.60730 -20.18198 -20.03345 -18.15536 -17.85480 -17.05053 -16.99813 -16.72740 -16.45617 -16.10100 -16.01003 -15.08262 -14.92606 -14.43111 -13.95122 -13.62002 -13.39987 -13.24126 -13.11416 -12.84635 -12.60399 -12.39709 -12.32151 -12.24616 -11.83634 -11.47287 -11.40117 -11.34018 -11.30335 -11.14561 -10.93663 -10.87443 -10.79623 -10.62770 -10.49132 -10.10244 -10.01881 -9.68553 -9.55656 -9.40258 -8.74300 -8.65087 -6.93248 -5.78507 -3.13469 1.01021 1.55568 2.08746 2.20536 2.57017 3.34892 3.41058 3.42204 3.71049 3.95467 3.98935 4.28475 4.31154 4.39341 4.53147 4.59124 4.70053 4.93207 4.96414 5.11023 5.17766 5.18532 5.22794 5.34182 5.43405 5.44782 5.50839 5.58514 5.70498 5.78916 5.82538 5.91256 5.93936 6.09537 6.10680 6.17050 6.25471 6.39487 6.52987 6.80094 6.85039 7.18654 7.30389 7.50541 7.69597 7.76517 8.05598 8.41825 9.04041 9.69696 10.36491 11.32486 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002725 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.600417 B =10271.780297 C =10474.363924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.611 5.611 10 C 0.200 3.800 11 C -0.141 4.141 12 H 0.060 0.940 13 C -0.124 4.124 14 H 0.085 0.915 15 C 0.149 3.851 16 C 0.166 3.834 17 H 0.110 0.890 18 C -0.133 4.133 19 C -0.111 4.111 20 C -0.070 4.070 21 H 0.102 0.898 22 C 0.106 3.894 23 N -0.608 5.608 24 C 0.507 3.493 25 O -0.520 6.520 26 C 0.095 3.905 27 N -0.298 5.298 28 C 0.159 3.841 29 N -0.308 5.308 30 N -0.081 5.081 31 N -0.062 5.062 32 H 0.251 0.749 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.142 0.858 45 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 -12.361 1.962 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.339 5.339 10 C 0.077 3.923 11 C -0.160 4.160 12 H 0.079 0.921 13 C -0.143 4.143 14 H 0.104 0.896 15 C 0.023 3.977 16 C 0.065 3.935 17 H 0.128 0.872 18 C -0.171 4.171 19 C -0.148 4.148 20 C -0.089 4.089 21 H 0.120 0.880 22 C -0.016 4.016 23 N -0.344 5.344 24 C 0.291 3.709 25 O -0.395 6.395 26 C -0.030 4.030 27 N -0.101 5.101 28 C -0.140 4.140 29 N -0.156 5.156 30 N -0.076 5.076 31 N -0.049 5.049 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.041 0.959 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.151 0.849 44 H 0.160 0.840 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -8.515 -13.848 1.453 16.321 hybrid contribution 0.146 2.111 0.287 2.135 sum -8.369 -11.737 1.740 14.520 Atomic orbital electron populations 1.69949 1.04874 1.24996 1.56778 1.24767 0.95645 0.97583 1.02409 0.86146 0.78735 0.83677 0.77496 1.21702 1.21785 1.20657 1.19070 0.91007 0.82888 1.42542 0.90645 1.46245 1.07173 0.99241 1.81229 1.20329 0.85492 0.87060 0.99438 1.21713 0.94811 0.98643 1.00821 0.92140 1.23124 0.99627 0.91434 1.00157 0.89628 1.21208 0.92936 0.85947 0.97615 1.22400 0.86260 0.93856 0.90937 0.87182 1.22489 0.97120 1.01786 0.95700 1.22518 0.95524 0.97745 0.99058 1.21434 0.99080 0.94729 0.93652 0.87989 1.22620 0.87895 0.91194 0.99874 1.49822 1.15238 1.13788 1.55502 1.19881 0.88872 0.82159 0.79956 1.90837 1.38939 1.51113 1.58636 1.22103 0.99957 0.78272 1.02707 1.48186 1.43683 1.09843 1.08341 1.27741 1.02769 0.94592 0.88851 1.74985 1.16263 1.08249 1.16061 1.78668 1.15175 1.18997 0.94713 1.79014 1.14014 0.89701 1.22129 0.93839 0.94079 0.92536 0.93736 0.95864 0.89931 0.91941 0.91461 0.92142 0.90500 0.90051 0.84868 0.84011 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.37 10.62 55.49 0.59 -24.78 16 2 C -0.01 -0.20 5.43 -17.43 -0.09 -0.30 16 3 Si 0.91 21.30 29.56 -169.99 -5.03 16.27 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.01 10.29 -15.06 -0.16 -6.16 16 8 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16 9 N -0.61 -14.36 3.56 -168.65 -0.60 -14.96 16 10 C 0.20 4.23 5.38 -3.06 -0.02 4.22 16 11 C -0.14 -2.13 2.46 -92.22 -0.23 -2.36 16 12 H 0.06 0.96 4.25 -51.93 -0.22 0.74 16 13 C -0.12 -1.85 2.59 -88.17 -0.23 -2.08 16 14 H 0.09 1.36 6.98 -51.93 -0.36 1.00 16 15 C 0.15 2.78 6.76 -2.54 -0.02 2.77 16 16 C 0.17 2.12 4.10 -64.98 -0.27 1.85 16 17 H 0.11 1.52 7.77 -51.93 -0.40 1.12 16 18 C -0.13 -1.57 5.54 -25.36 -0.14 -1.71 16 19 C -0.11 -1.13 5.52 -24.42 -0.13 -1.26 16 20 C -0.07 -0.74 4.28 -89.63 -0.38 -1.13 16 21 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 22 C 0.11 0.89 5.28 -1.68 -0.01 0.88 16 23 N -0.61 -6.36 2.19 -159.14 -0.35 -6.71 16 24 C 0.51 5.57 7.81 -10.99 -0.09 5.48 16 25 O -0.52 -8.25 15.66 5.56 0.09 -8.17 16 26 C 0.10 0.60 5.69 -5.20 -0.03 0.57 16 27 N -0.30 -2.93 3.19 -63.73 -0.20 -3.14 16 28 C 0.16 1.34 12.79 -90.39 -1.16 0.18 16 29 N -0.31 -3.92 12.36 29.59 0.37 -3.55 16 30 N -0.08 -1.22 13.43 60.35 0.81 -0.41 16 31 N -0.06 -0.87 12.29 60.35 0.74 -0.13 16 32 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.04 0.97 8.01 -51.93 -0.42 0.55 16 34 H 0.06 1.34 7.16 -51.93 -0.37 0.96 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.02 0.43 7.75 -51.93 -0.40 0.03 16 37 H 0.08 1.06 6.08 -51.93 -0.32 0.74 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.56 7.68 -51.93 -0.40 0.16 16 41 H 0.08 0.36 6.84 -51.93 -0.36 0.00 16 42 H 0.08 0.73 7.27 -51.93 -0.38 0.36 16 43 H 0.13 0.50 7.63 -51.93 -0.40 0.10 16 44 H 0.14 0.30 8.08 -51.93 -0.42 -0.12 16 45 H 0.24 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -35.63 350.39 -7.35 -42.98 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -6.10 Total: -3.63 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.94 Total: 0.95 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 1.35 Total: -53.68 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.63 -7.35 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089771398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.222 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds