Wall clock time and date at job start Tue Mar 31 2020 17:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48508 * 109.46892 * 274.81388 * 3 2 1 5 5 H 1.48496 * 109.47063 * 34.81144 * 3 2 1 6 6 H 1.48497 * 109.47074 * 154.81355 * 3 2 1 7 7 C 1.38811 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99920 * 188.85723 * 7 2 1 9 9 N 1.36930 * 120.00068 * 8.85181 * 7 2 1 10 10 C 1.52327 * 125.19240 * 8.76448 * 9 7 2 11 11 C 1.48196 * 103.03329 * 176.13109 * 10 9 7 12 12 H 1.09000 * 102.83916 * 285.20279 * 11 10 9 13 13 C 1.58010 * 104.89425 * 30.37786 * 11 10 9 14 14 H 1.09000 * 111.79051 * 71.48566 * 13 11 10 15 15 C 1.49483 * 125.92853 * 187.78537 * 9 7 2 16 16 C 1.52723 * 103.66853 * 191.27162 * 13 11 10 17 17 H 1.09005 * 114.33090 * 156.13678 * 16 13 11 18 18 C 1.54713 * 108.18218 * 28.21088 * 16 13 11 19 19 C 1.53905 * 109.18122 * 285.16523 * 18 16 13 20 20 C 1.48886 * 132.34610 * 162.85835 * 11 10 9 21 21 H 1.08996 * 113.32408 * 21.68735 * 20 11 10 22 22 C 1.55212 * 109.51972 * 254.10074 * 20 11 10 23 23 N 1.48653 * 106.24322 * 291.21842 * 22 20 11 24 24 C 1.34773 * 123.11998 * 213.47988 * 23 22 20 25 25 O 1.21281 * 119.99916 * 179.70652 * 24 23 22 26 26 C 1.50697 * 119.99912 * 359.70561 * 24 23 22 27 27 N 1.46500 * 109.47087 * 180.02562 * 26 24 23 28 28 C 1.34591 * 126.43845 * 124.71616 * 27 26 24 29 29 N 1.31078 * 106.68180 * 180.26346 * 28 27 26 30 30 N 1.28842 * 107.98545 * 359.97438 * 29 28 27 31 31 N 1.28734 * 109.39829 * 0.02562 * 30 29 28 32 32 H 0.96997 * 119.99800 * 359.97438 * 1 2 3 33 33 H 1.08998 * 112.51238 * 57.17270 * 10 9 7 34 34 H 1.09001 * 109.66252 * 293.75417 * 10 9 7 35 35 H 1.08994 * 110.68417 * 36.15137 * 15 9 7 36 36 H 1.09005 * 110.68126 * 272.98427 * 15 9 7 37 37 H 1.09004 * 109.51619 * 45.06787 * 18 16 13 38 38 H 1.08992 * 109.52490 * 165.24975 * 18 16 13 39 39 H 1.09000 * 110.08183 * 156.15524 * 19 18 16 40 40 H 1.08996 * 110.07946 * 277.76014 * 19 18 16 41 41 H 1.08993 * 110.12622 * 171.99131 * 22 20 11 42 42 H 1.09001 * 109.97439 * 50.36695 * 22 20 11 43 43 H 1.09005 * 109.47179 * 60.00171 * 26 24 23 44 44 H 1.08999 * 109.47387 * 300.00135 * 26 24 23 45 45 H 1.08007 * 126.66491 * 0.24028 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5023 2.6211 0.7992 6 1 3.5950 1.4129 0.5958 7 6 2.0103 -1.2022 -0.0005 8 1 3.0806 -1.2078 0.1435 9 7 1.3379 -2.3809 -0.1835 10 6 -0.1271 -2.5030 -0.5827 11 6 -0.3115 -3.9657 -0.7336 12 1 0.1891 -4.1767 -1.6786 13 6 0.7019 -4.6109 0.2927 14 1 0.3797 -4.4674 1.3240 15 6 1.9177 -3.7518 -0.0468 16 6 0.7026 -6.0912 -0.0830 17 1 1.6042 -6.6287 0.2111 18 6 0.3700 -6.2071 -1.5895 19 6 -1.1323 -5.9451 -1.7973 20 6 -1.5274 -4.8236 -0.7811 21 1 -2.4291 -4.2791 -1.0612 22 6 -1.6683 -5.5980 0.5566 23 7 -0.5516 -6.5786 0.5891 24 6 -0.6553 -7.7939 1.1624 25 8 0.2912 -8.5522 1.1515 26 6 -1.9471 -8.2105 1.8170 27 7 -1.8046 -9.5630 2.3618 28 6 -2.0272 -9.9397 3.6346 29 7 -1.7787 -11.2253 3.6954 30 7 -1.4226 -11.6176 2.5210 31 7 -1.4370 -10.6157 1.7128 32 1 -0.4850 0.8400 0.0004 33 1 -0.3482 -1.9925 -1.5200 34 1 -0.7588 -2.1201 0.2189 35 1 2.6482 -3.7820 0.7616 36 1 2.3674 -4.0751 -0.9856 37 1 0.9486 -5.4711 -2.1478 38 1 0.6171 -7.2087 -1.9410 39 1 -1.3157 -5.6074 -2.8173 40 1 -1.7019 -6.8519 -1.5939 41 1 -2.6254 -6.1185 0.5896 42 1 -1.5860 -4.9082 1.3966 43 1 -2.7490 -8.1985 1.0787 44 1 -2.1857 -7.5175 2.6238 45 1 -2.3479 -9.3058 4.4481 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089771398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:15 Heat of formation + Delta-G solvation = 151.898021 kcal Electronic energy + Delta-G solvation = -29539.164873 eV Core-core repulsion = 25596.620824 eV Total energy + Delta-G solvation = -3942.544050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -45.13732 -42.76227 -40.13386 -37.36889 -36.39390 -34.58391 -33.66955 -33.40598 -32.52904 -30.69460 -30.02893 -28.95970 -27.05646 -25.48250 -24.80917 -24.41407 -23.40427 -22.70263 -21.58866 -21.00270 -18.88465 -18.79530 -18.70473 -17.98239 -17.65507 -17.47278 -17.10995 -16.82077 -16.38142 -15.88158 -15.77708 -15.30340 -14.66383 -14.57981 -14.27961 -14.20713 -14.02846 -13.91683 -13.53435 -13.23179 -13.13213 -13.11599 -12.83789 -12.72434 -12.54264 -12.46251 -12.24529 -12.19011 -12.10091 -12.04171 -11.91421 -11.81132 -11.49934 -11.37146 -11.01366 -10.82928 -10.74638 -10.45206 -9.61168 -8.87960 -7.82563 -5.18584 0.29257 0.98212 1.28065 1.45023 1.46281 1.47455 1.55646 1.78531 2.48549 3.06640 3.28792 3.29501 3.38058 3.48469 3.51994 3.59263 3.87236 3.98811 4.02737 4.02911 4.08560 4.19913 4.23971 4.39116 4.42116 4.47027 4.55192 4.63003 4.70900 4.74077 4.86101 4.90350 4.93262 5.02429 5.11771 5.21936 5.23019 5.28360 5.31137 5.43569 5.48698 5.53747 5.60295 5.89929 6.14215 6.39251 6.97625 7.03772 7.60696 7.70882 8.40735 9.26282 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.026002 B = 0.002725 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.600417 B =10271.780297 C =10474.363924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.059 4.059 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.635 5.635 10 C 0.209 3.791 11 C -0.126 4.126 12 H 0.052 0.948 13 C -0.104 4.104 14 H 0.080 0.920 15 C 0.142 3.858 16 C 0.169 3.831 17 H 0.095 0.905 18 C -0.131 4.131 19 C -0.102 4.102 20 C -0.067 4.067 21 H 0.121 0.879 22 C 0.107 3.893 23 N -0.604 5.604 24 C 0.505 3.495 25 O -0.577 6.577 26 C 0.095 3.905 27 N -0.297 5.297 28 C 0.183 3.817 29 N -0.347 5.347 30 N -0.120 5.120 31 N -0.095 5.095 32 H 0.247 0.753 33 H 0.007 0.993 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.172 0.828 44 H 0.198 0.802 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.893 -12.725 2.890 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.253 4.253 3 Si 0.798 3.202 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.087 3.913 11 C -0.145 4.145 12 H 0.070 0.930 13 C -0.124 4.124 14 H 0.099 0.901 15 C 0.018 3.982 16 C 0.067 3.933 17 H 0.113 0.887 18 C -0.169 4.169 19 C -0.140 4.140 20 C -0.087 4.087 21 H 0.139 0.861 22 C -0.014 4.014 23 N -0.338 5.338 24 C 0.292 3.708 25 O -0.456 6.456 26 C -0.028 4.028 27 N -0.100 5.100 28 C -0.115 4.115 29 N -0.195 5.195 30 N -0.115 5.115 31 N -0.082 5.082 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.153 0.847 42 H 0.099 0.901 43 H 0.189 0.811 44 H 0.215 0.785 45 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -11.027 -14.219 2.375 18.150 hybrid contribution 1.012 2.318 0.006 2.530 sum -10.014 -11.901 2.381 15.735 Atomic orbital electron populations 1.70121 1.05860 1.25175 1.57762 1.25486 0.96554 1.00372 1.02916 0.85203 0.77870 0.79969 0.77145 1.21773 1.21885 1.19836 1.19365 0.91276 0.84512 1.41942 0.91069 1.46606 1.08334 1.00188 1.81250 1.20028 0.84013 0.90777 0.96517 1.21545 0.97805 0.94937 1.00200 0.93016 1.22880 0.97151 0.92634 0.99758 0.90136 1.21334 0.94498 0.84872 0.97522 1.22076 0.87486 0.91725 0.92024 0.88732 1.22458 0.98592 1.01267 0.94606 1.22479 0.94019 0.98305 0.99155 1.21507 0.97442 0.93975 0.95737 0.86102 1.22862 0.89375 0.91059 0.98070 1.49767 1.14656 1.14303 1.55038 1.20648 0.89947 0.81190 0.79057 1.90833 1.41480 1.52659 1.60661 1.22600 0.97525 0.77308 1.05375 1.48425 1.42798 1.10080 1.08667 1.28774 0.99674 0.93752 0.89284 1.74882 1.17873 1.10929 1.15783 1.78633 1.16761 1.20296 0.95776 1.78921 1.15238 0.90826 1.23211 0.94346 0.97462 0.95288 0.94440 0.95501 0.91631 0.91916 0.91118 0.89871 0.84747 0.90124 0.81122 0.78537 0.69126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.34 10.62 21.65 0.23 -53.11 16 2 C -0.06 -3.26 5.43 84.86 0.46 -2.80 16 3 Si 0.97 44.54 29.56 68.60 2.03 46.57 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.24 -13.19 10.29 84.03 0.86 -12.33 16 8 H 0.07 3.82 7.84 -2.91 -0.02 3.80 16 9 N -0.64 -30.91 3.56 -687.48 -2.45 -33.36 16 10 C 0.21 9.15 5.38 83.71 0.45 9.60 16 11 C -0.13 -3.73 2.46 -11.83 -0.03 -3.76 16 12 H 0.05 1.64 4.25 -2.39 -0.01 1.63 16 13 C -0.10 -3.09 2.59 -9.21 -0.02 -3.11 16 14 H 0.08 2.48 6.98 -2.39 -0.02 2.46 16 15 C 0.14 5.50 6.76 85.70 0.58 6.07 16 16 C 0.17 4.13 4.10 44.72 0.18 4.32 16 17 H 0.09 2.64 7.77 -2.38 -0.02 2.62 16 18 C -0.13 -2.93 5.54 31.48 0.17 -2.76 16 19 C -0.10 -1.73 5.52 32.09 0.18 -1.56 16 20 C -0.07 -1.21 4.28 -10.15 -0.04 -1.26 16 21 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 22 C 0.11 1.24 5.28 86.72 0.46 1.70 16 23 N -0.60 -10.52 2.19 -775.78 -1.70 -12.22 16 24 C 0.50 9.28 7.81 87.66 0.69 9.97 16 25 O -0.58 -17.59 15.66 -3.03 -0.05 -17.63 16 26 C 0.10 0.64 5.69 85.63 0.49 1.13 16 27 N -0.30 -4.72 3.19 -355.56 -1.14 -5.86 16 28 C 0.18 2.34 12.79 180.27 2.31 4.65 16 29 N -0.35 -8.28 12.36 -60.29 -0.74 -9.02 16 30 N -0.12 -3.57 13.43 37.01 0.50 -3.07 16 31 N -0.09 -2.52 12.29 37.02 0.45 -2.06 16 32 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 33 H 0.01 0.35 8.01 -2.39 -0.02 0.33 16 34 H 0.03 1.41 7.16 -2.39 -0.02 1.39 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.03 1.02 7.75 -2.38 -0.02 1.00 16 37 H 0.07 1.68 6.08 -2.38 -0.01 1.67 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.11 7.68 -2.39 -0.02 1.09 16 41 H 0.13 0.15 6.84 -2.39 -0.02 0.13 16 42 H 0.08 1.06 7.27 -2.39 -0.02 1.04 16 43 H 0.17 -0.02 7.63 -2.38 -0.02 -0.03 16 44 H 0.20 -0.80 8.08 -2.39 -0.02 -0.82 16 45 H 0.29 -0.43 8.06 -2.91 -0.02 -0.45 16 Total: -1.00 -86.85 350.39 4.89 -81.97 By element: Atomic # 1 Polarization: -3.08 SS G_CDS: 1.02 Total: -2.06 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.73 Total: 9.87 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -4.84 Total: -118.70 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.05 Total: -17.63 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -86.85 4.89 -81.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089771398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.863 kcal (2) G-P(sol) polarization free energy of solvation -86.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds