Wall clock time and date at job start Tue Mar 31 2020 17:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00256 * 2 1 4 4 H 1.48500 * 109.46772 * 269.99944 * 3 2 1 5 5 H 1.48498 * 109.47285 * 29.99674 * 3 2 1 6 6 H 1.48497 * 109.47368 * 149.99886 * 3 2 1 7 7 C 1.38815 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99992 * 189.10502 * 7 2 1 9 9 N 1.36933 * 120.00028 * 9.11215 * 7 2 1 10 10 C 1.48169 * 127.83694 * 15.68408 * 9 7 2 11 11 C 1.54369 * 104.54484 * 140.26906 * 10 9 7 12 12 H 1.09001 * 111.44859 * 264.06046 * 11 10 9 13 13 C 1.54162 * 104.99843 * 24.22962 * 11 10 9 14 14 H 1.08996 * 111.36708 * 239.46462 * 13 11 10 15 15 C 1.48135 * 127.83653 * 195.63412 * 9 7 2 16 16 C 1.53038 * 109.71637 * 116.39196 * 13 11 10 17 17 H 1.08999 * 109.63270 * 180.55259 * 16 13 11 18 18 C 1.53033 * 109.21775 * 300.70526 * 16 13 11 19 19 C 1.52938 * 110.01608 * 59.31891 * 18 16 13 20 20 C 1.53238 * 109.01155 * 141.36656 * 11 10 9 21 21 H 1.09003 * 110.93849 * 67.79620 * 20 11 10 22 22 N 1.47688 * 108.05707 * 189.07410 * 20 11 10 23 23 C 1.34774 * 122.07127 * 238.74709 * 22 20 11 24 24 O 1.21285 * 119.99989 * 359.97438 * 23 22 20 25 25 C 1.50703 * 119.99853 * 180.02562 * 23 22 20 26 26 N 1.46500 * 109.46633 * 179.97438 * 25 23 22 27 27 N 1.28885 * 125.44831 * 269.97546 * 26 25 23 28 28 C 1.31044 * 107.91338 * 180.02562 * 27 26 25 29 29 N 1.33309 * 106.90271 * 0.02562 * 28 27 26 30 30 N 1.28782 * 125.45184 * 90.02659 * 26 25 23 31 31 C 1.47639 * 115.85863 * 59.01231 * 22 20 11 32 32 H 0.97001 * 120.00122 * 0.02562 * 1 2 3 33 33 H 1.08994 * 110.41886 * 259.04039 * 10 9 7 34 34 H 1.08996 * 110.41759 * 21.38501 * 10 9 7 35 35 H 1.09002 * 110.39836 * 100.65191 * 15 9 7 36 36 H 1.09003 * 110.40320 * 338.24322 * 15 9 7 37 37 H 1.09001 * 109.37573 * 299.15313 * 18 16 13 38 38 H 1.09001 * 109.29131 * 179.43748 * 18 16 13 39 39 H 1.09001 * 109.45320 * 240.65909 * 19 18 16 40 40 H 1.09001 * 109.44649 * 120.73591 * 19 18 16 41 41 H 1.08992 * 109.47294 * 59.99902 * 25 23 22 42 42 H 1.08999 * 109.47186 * 299.99242 * 25 23 22 43 43 H 1.08003 * 126.54641 * 180.02562 * 28 27 26 44 44 H 1.09003 * 109.99041 * 119.21527 * 31 22 20 45 45 H 1.08995 * 109.99979 * 240.59689 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0800 -1.2081 0.1486 9 7 1.3384 -2.3807 -0.1867 10 6 -0.0336 -2.5711 -0.7129 11 6 0.0684 -3.8159 -1.6200 12 1 0.2122 -3.5376 -2.6640 13 6 1.2839 -4.5998 -1.0866 14 1 2.0464 -4.7219 -1.8558 15 6 1.8189 -3.7544 0.0898 16 6 0.8275 -5.9593 -0.5523 17 1 1.6865 -6.5084 -0.1666 18 6 -0.1910 -5.7436 0.5693 19 6 -1.3945 -4.9620 0.0403 20 6 -1.1977 -4.6624 -1.4503 21 1 -2.0686 -4.1459 -1.8539 22 7 -0.9874 -5.9460 -2.1498 23 6 -1.7954 -6.3587 -3.1463 24 8 -2.7303 -5.6688 -3.4941 25 6 -1.5378 -7.6779 -3.8278 26 7 -2.5472 -7.8959 -4.8670 27 7 -3.6785 -8.4895 -4.6973 28 6 -4.3075 -8.4946 -5.8469 29 7 -3.5145 -7.8808 -6.7253 30 7 -2.4457 -7.5259 -6.0963 31 6 0.1593 -6.7519 -1.6856 32 1 -0.4850 0.8400 -0.0004 33 1 -0.7324 -2.7518 0.1039 34 1 -0.3431 -1.7009 -1.2916 35 1 1.4117 -4.1164 1.0339 36 1 2.9084 -3.7788 0.1106 37 1 0.2763 -5.1837 1.3794 38 1 -0.5244 -6.7114 0.9440 39 1 -1.4889 -4.0253 0.5897 40 1 -2.2996 -5.5543 0.1752 41 1 -1.5921 -8.4824 -3.0945 42 1 -0.5464 -7.6654 -4.2808 43 1 -5.2822 -8.9156 -6.0449 44 1 -0.1888 -7.7159 -1.3143 45 1 0.8664 -6.8989 -2.5019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089816360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:26 Heat of formation + Delta-G solvation = 145.609391 kcal Electronic energy + Delta-G solvation = -29641.167267 eV Core-core repulsion = 25698.350521 eV Total energy + Delta-G solvation = -3942.816745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.47942 -41.31258 -39.06818 -35.81663 -35.14093 -33.37277 -33.17341 -32.10847 -31.78669 -29.68832 -29.15456 -27.20055 -25.58154 -24.34745 -24.11345 -23.43553 -22.13484 -21.30292 -20.49346 -20.09143 -18.26717 -17.95788 -17.09805 -16.76022 -16.44015 -16.37132 -16.04558 -15.40608 -15.08253 -14.84350 -14.52202 -13.96750 -13.73437 -13.57029 -13.32481 -13.11649 -12.96436 -12.75612 -12.40831 -12.15071 -11.88774 -11.85636 -11.70405 -11.36954 -11.29302 -11.14631 -11.13554 -10.88484 -10.79552 -10.61620 -10.24513 -10.20753 -10.03123 -9.92898 -9.80611 -9.71463 -9.43465 -8.73242 -8.54334 -6.87454 -5.82585 -3.16844 1.00846 1.56252 2.10437 2.25545 2.76132 3.36081 3.41522 3.43381 3.84307 3.93231 4.19139 4.37949 4.42568 4.58816 4.65648 4.75576 4.84330 5.06499 5.10206 5.20447 5.39795 5.45558 5.52161 5.53979 5.56414 5.58354 5.72024 5.72983 5.79579 5.81364 5.85493 5.96522 6.07564 6.14853 6.32855 6.36595 6.42356 6.52549 6.56952 6.73342 6.93554 7.23696 7.34211 7.51729 7.69021 7.83512 8.18150 8.19775 9.07713 9.71119 10.47770 11.31188 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.002990 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.302043 B = 9362.480653 C =10041.767675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.075 0.925 9 N -0.594 5.594 10 C 0.161 3.839 11 C -0.115 4.115 12 H 0.069 0.931 13 C -0.093 4.093 14 H 0.070 0.930 15 C 0.126 3.874 16 C -0.089 4.089 17 H 0.087 0.913 18 C -0.115 4.115 19 C -0.133 4.133 20 C 0.155 3.845 21 H 0.101 0.899 22 N -0.596 5.596 23 C 0.507 3.493 24 O -0.525 6.525 25 C 0.112 3.888 26 N -0.125 5.125 27 N -0.303 5.303 28 C 0.143 3.857 29 N -0.286 5.286 30 N -0.048 5.048 31 C 0.107 3.893 32 H 0.254 0.746 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.236 0.764 44 H 0.071 0.929 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 -20.432 -3.366 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.317 5.317 10 C 0.035 3.965 11 C -0.136 4.136 12 H 0.088 0.912 13 C -0.114 4.114 14 H 0.088 0.912 15 C -0.001 4.001 16 C -0.107 4.107 17 H 0.105 0.895 18 C -0.153 4.153 19 C -0.171 4.171 20 C 0.054 3.946 21 H 0.119 0.881 22 N -0.330 5.330 23 C 0.291 3.709 24 O -0.401 6.401 25 C -0.013 4.013 26 N -0.036 5.036 27 N -0.152 5.152 28 C -0.160 4.160 29 N -0.157 5.157 30 N -0.042 5.042 31 C -0.016 4.016 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.161 0.839 42 H 0.163 0.837 43 H 0.252 0.748 44 H 0.090 0.910 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.892 -19.477 -3.613 19.899 hybrid contribution -0.055 0.521 0.126 0.539 sum -1.947 -18.956 -3.487 19.372 Atomic orbital electron populations 1.69875 1.05032 1.25443 1.55638 1.24880 0.95615 0.97934 1.01735 0.86146 0.78692 0.83408 0.77659 1.21518 1.21669 1.20594 1.18974 0.90726 0.82416 1.43502 0.90701 1.44885 1.13563 0.99961 1.73268 1.21740 0.87367 0.93397 0.94036 1.22680 0.92339 0.97571 1.00994 0.91241 1.22165 0.97143 0.93074 0.98976 0.91160 1.21905 0.96981 0.86799 0.94385 1.21400 0.98041 0.96729 0.94579 0.89487 1.21613 0.95673 0.99844 0.98140 1.22050 0.97708 1.02046 0.95277 1.21515 0.99627 0.81988 0.91505 0.88076 1.48642 1.28501 1.21841 1.33970 1.19996 0.83236 0.86878 0.80806 1.90817 1.29874 1.55847 1.63595 1.22062 0.90235 0.99817 0.89138 1.49519 1.12249 1.33712 1.08116 1.74693 0.96238 1.17469 1.26818 1.27333 1.02778 1.01097 0.84766 1.75878 0.99016 1.14044 1.26811 1.79014 1.18605 1.15602 0.91007 1.22122 0.87556 0.94068 0.97818 0.93550 0.94855 0.89768 0.94989 0.93916 0.90180 0.92507 0.88763 0.92382 0.83912 0.83710 0.74821 0.91046 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.12 10.86 55.49 0.60 -25.51 16 2 C 0.00 -0.12 5.40 -17.43 -0.09 -0.21 16 3 Si 0.91 21.61 29.56 -169.99 -5.03 16.58 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -6.10 10.35 -15.06 -0.16 -6.26 16 8 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 9 N -0.59 -14.18 3.38 -168.84 -0.57 -14.75 16 10 C 0.16 3.58 5.20 -2.41 -0.01 3.57 16 11 C -0.11 -2.00 3.33 -89.17 -0.30 -2.30 16 12 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.09 -1.39 3.15 -89.24 -0.28 -1.67 16 14 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.32 6.53 -2.39 -0.02 2.30 16 16 C -0.09 -0.95 2.86 -90.28 -0.26 -1.21 16 17 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.12 -1.35 5.30 -26.75 -0.14 -1.49 16 19 C -0.13 -1.84 5.52 -26.60 -0.15 -1.99 16 20 C 0.16 2.36 3.11 -66.99 -0.21 2.15 16 21 H 0.10 1.78 7.20 -51.93 -0.37 1.40 16 22 N -0.60 -7.21 2.81 -163.62 -0.46 -7.67 16 23 C 0.51 6.60 7.82 -10.99 -0.09 6.51 16 24 O -0.53 -9.49 16.02 5.55 0.09 -9.40 16 25 C 0.11 0.98 6.02 -5.19 -0.03 0.95 16 26 N -0.12 -1.53 3.49 -11.72 -0.04 -1.57 16 27 N -0.30 -3.68 12.13 29.34 0.36 -3.33 16 28 C 0.14 1.55 13.26 -91.59 -1.21 0.33 16 29 N -0.29 -3.88 12.50 29.33 0.37 -3.51 16 30 N -0.05 -0.68 13.25 60.35 0.80 0.12 16 31 C 0.11 0.91 5.29 -3.11 -0.02 0.89 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.03 0.76 5.21 -51.93 -0.27 0.49 16 34 H 0.08 2.20 6.51 -51.93 -0.34 1.87 16 35 H 0.03 0.58 5.31 -51.93 -0.28 0.30 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.05 5.79 -51.93 -0.30 0.75 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.51 5.67 -51.93 -0.29 1.22 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.14 0.75 8.11 -51.93 -0.42 0.33 16 42 H 0.15 0.82 8.13 -51.93 -0.42 0.40 16 43 H 0.24 1.35 8.06 -52.48 -0.42 0.93 16 44 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 45 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -34.99 349.71 -7.62 -42.61 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.05 Total: -0.43 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.96 Total: 1.59 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 1.05 Total: -56.22 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.99 -7.62 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089816360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.220 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds