Wall clock time and date at job start Tue Mar 31 2020 17:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00256 * 2 1 4 4 H 1.48500 * 109.46772 * 269.99944 * 3 2 1 5 5 H 1.48498 * 109.47285 * 29.99674 * 3 2 1 6 6 H 1.48497 * 109.47368 * 149.99886 * 3 2 1 7 7 C 1.38815 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99992 * 189.10502 * 7 2 1 9 9 N 1.36933 * 120.00028 * 9.11215 * 7 2 1 10 10 C 1.48169 * 127.83694 * 15.68408 * 9 7 2 11 11 C 1.54369 * 104.54484 * 140.26906 * 10 9 7 12 12 H 1.09001 * 111.44859 * 264.06046 * 11 10 9 13 13 C 1.54162 * 104.99843 * 24.22962 * 11 10 9 14 14 H 1.08996 * 111.36708 * 239.46462 * 13 11 10 15 15 C 1.48135 * 127.83653 * 195.63412 * 9 7 2 16 16 C 1.53038 * 109.71637 * 116.39196 * 13 11 10 17 17 H 1.08999 * 109.63270 * 180.55259 * 16 13 11 18 18 C 1.53033 * 109.21775 * 300.70526 * 16 13 11 19 19 C 1.52938 * 110.01608 * 59.31891 * 18 16 13 20 20 C 1.53238 * 109.01155 * 141.36656 * 11 10 9 21 21 H 1.09003 * 110.93849 * 67.79620 * 20 11 10 22 22 N 1.47688 * 108.05707 * 189.07410 * 20 11 10 23 23 C 1.34774 * 122.07127 * 238.74709 * 22 20 11 24 24 O 1.21285 * 119.99989 * 359.97438 * 23 22 20 25 25 C 1.50703 * 119.99853 * 180.02562 * 23 22 20 26 26 N 1.46500 * 109.46633 * 179.97438 * 25 23 22 27 27 N 1.28885 * 125.44831 * 269.97546 * 26 25 23 28 28 C 1.31044 * 107.91338 * 180.02562 * 27 26 25 29 29 N 1.33309 * 106.90271 * 0.02562 * 28 27 26 30 30 N 1.28782 * 125.45184 * 90.02659 * 26 25 23 31 31 C 1.47639 * 115.85863 * 59.01231 * 22 20 11 32 32 H 0.97001 * 120.00122 * 0.02562 * 1 2 3 33 33 H 1.08994 * 110.41886 * 259.04039 * 10 9 7 34 34 H 1.08996 * 110.41759 * 21.38501 * 10 9 7 35 35 H 1.09002 * 110.39836 * 100.65191 * 15 9 7 36 36 H 1.09003 * 110.40320 * 338.24322 * 15 9 7 37 37 H 1.09001 * 109.37573 * 299.15313 * 18 16 13 38 38 H 1.09001 * 109.29131 * 179.43748 * 18 16 13 39 39 H 1.09001 * 109.45320 * 240.65909 * 19 18 16 40 40 H 1.09001 * 109.44649 * 120.73591 * 19 18 16 41 41 H 1.08992 * 109.47294 * 59.99902 * 25 23 22 42 42 H 1.08999 * 109.47186 * 299.99242 * 25 23 22 43 43 H 1.08003 * 126.54641 * 180.02562 * 28 27 26 44 44 H 1.09003 * 109.99041 * 119.21527 * 31 22 20 45 45 H 1.08995 * 109.99979 * 240.59689 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0800 -1.2081 0.1486 9 7 1.3384 -2.3807 -0.1867 10 6 -0.0336 -2.5711 -0.7129 11 6 0.0684 -3.8159 -1.6200 12 1 0.2122 -3.5376 -2.6640 13 6 1.2839 -4.5998 -1.0866 14 1 2.0464 -4.7219 -1.8558 15 6 1.8189 -3.7544 0.0898 16 6 0.8275 -5.9593 -0.5523 17 1 1.6865 -6.5084 -0.1666 18 6 -0.1910 -5.7436 0.5693 19 6 -1.3945 -4.9620 0.0403 20 6 -1.1977 -4.6624 -1.4503 21 1 -2.0686 -4.1459 -1.8539 22 7 -0.9874 -5.9460 -2.1498 23 6 -1.7954 -6.3587 -3.1463 24 8 -2.7303 -5.6688 -3.4941 25 6 -1.5378 -7.6779 -3.8278 26 7 -2.5472 -7.8959 -4.8670 27 7 -3.6785 -8.4895 -4.6973 28 6 -4.3075 -8.4946 -5.8469 29 7 -3.5145 -7.8808 -6.7253 30 7 -2.4457 -7.5259 -6.0963 31 6 0.1593 -6.7519 -1.6856 32 1 -0.4850 0.8400 -0.0004 33 1 -0.7324 -2.7518 0.1039 34 1 -0.3431 -1.7009 -1.2916 35 1 1.4117 -4.1164 1.0339 36 1 2.9084 -3.7788 0.1106 37 1 0.2763 -5.1837 1.3794 38 1 -0.5244 -6.7114 0.9440 39 1 -1.4889 -4.0253 0.5897 40 1 -2.2996 -5.5543 0.1752 41 1 -1.5921 -8.4824 -3.0945 42 1 -0.5464 -7.6654 -4.2808 43 1 -5.2822 -8.9156 -6.0449 44 1 -0.1888 -7.7159 -1.3143 45 1 0.8664 -6.8989 -2.5019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089816360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:24 Heat of formation + Delta-G solvation = 120.914195 kcal Electronic energy + Delta-G solvation = -29642.238131 eV Core-core repulsion = 25698.350521 eV Total energy + Delta-G solvation = -3943.887609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -45.34393 -42.43400 -40.19554 -37.28951 -36.01919 -34.72436 -34.10183 -33.42570 -33.19153 -31.00725 -30.26010 -28.50575 -27.24921 -25.60971 -24.96880 -24.37110 -23.36192 -22.46179 -22.08076 -21.19606 -19.24372 -18.85436 -18.78603 -17.85285 -17.54398 -17.41870 -17.05934 -16.73087 -16.29087 -16.03667 -15.80552 -15.29443 -14.94721 -14.88317 -14.50402 -14.21774 -13.92526 -13.77954 -13.71102 -13.41908 -13.15789 -13.07089 -12.96592 -12.84360 -12.69684 -12.44050 -12.23569 -12.19038 -12.04383 -11.95133 -11.77083 -11.70534 -11.64607 -11.19618 -11.11269 -10.96726 -10.73122 -10.62612 -9.61655 -8.82988 -7.90587 -5.25068 0.09836 0.83325 1.26556 1.32786 1.43577 1.45460 1.53802 1.83529 2.47689 3.12137 3.17334 3.29531 3.48860 3.55773 3.65684 3.76479 3.84663 3.88695 4.01872 4.12615 4.17093 4.25502 4.31516 4.40200 4.49351 4.57015 4.69200 4.72021 4.77881 4.79052 4.82196 4.95676 5.00414 5.03560 5.06166 5.20279 5.24851 5.32163 5.36394 5.42164 5.49285 5.60027 5.67883 5.75367 6.20009 6.32169 6.88795 7.02584 7.31383 7.72309 8.50516 9.22483 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.002990 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.302043 B = 9362.480653 C =10041.767675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.973 3.027 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.168 3.832 11 C -0.104 4.104 12 H 0.046 0.954 13 C -0.081 4.081 14 H 0.083 0.917 15 C 0.121 3.879 16 C -0.081 4.081 17 H 0.128 0.872 18 C -0.112 4.112 19 C -0.127 4.127 20 C 0.163 3.837 21 H 0.061 0.939 22 N -0.591 5.591 23 C 0.502 3.498 24 O -0.590 6.590 25 C 0.112 3.888 26 N -0.123 5.123 27 N -0.315 5.315 28 C 0.147 3.853 29 N -0.314 5.314 30 N -0.075 5.075 31 C 0.101 3.899 32 H 0.246 0.754 33 H 0.021 0.979 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.190 0.810 42 H 0.183 0.817 43 H 0.275 0.725 44 H 0.122 0.878 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 -24.878 -3.041 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.041 3.959 11 C -0.125 4.125 12 H 0.065 0.935 13 C -0.101 4.101 14 H 0.101 0.899 15 C -0.004 4.004 16 C -0.100 4.100 17 H 0.146 0.854 18 C -0.149 4.149 19 C -0.165 4.165 20 C 0.059 3.941 21 H 0.079 0.921 22 N -0.323 5.323 23 C 0.289 3.711 24 O -0.470 6.470 25 C -0.010 4.010 26 N -0.036 5.036 27 N -0.165 5.165 28 C -0.155 4.155 29 N -0.185 5.185 30 N -0.069 5.069 31 C -0.019 4.019 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.207 0.793 42 H 0.200 0.800 43 H 0.291 0.709 44 H 0.139 0.861 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.060 -23.990 -3.277 24.212 hybrid contribution -0.660 1.920 0.074 2.032 sum -0.600 -22.069 -3.203 22.308 Atomic orbital electron populations 1.70095 1.06517 1.25358 1.57634 1.25689 0.96384 1.01203 1.02689 0.85146 0.77964 0.79371 0.77307 1.21746 1.22365 1.18846 1.19372 0.91264 0.83830 1.41752 0.90124 1.45192 1.13975 1.01512 1.73863 1.21492 0.86868 0.93679 0.93814 1.22399 0.95343 0.96344 0.98412 0.93538 1.22092 0.95605 0.94770 0.97645 0.89905 1.22170 0.97446 0.84415 0.96366 1.21448 0.99223 0.94404 0.94896 0.85417 1.21620 0.94501 1.00814 0.97971 1.21943 0.99927 1.01026 0.93616 1.21025 0.96714 0.83520 0.92847 0.92068 1.48603 1.29577 1.20651 1.33453 1.20750 0.82141 0.87938 0.80275 1.90800 1.32693 1.58106 1.65411 1.22500 0.91005 0.98017 0.89474 1.49832 1.12678 1.32948 1.08135 1.74678 0.96500 1.17969 1.27314 1.28182 1.03682 0.99822 0.83855 1.75839 0.99622 1.15072 1.27963 1.78946 1.19319 1.16528 0.92108 1.22614 0.86539 0.94679 0.98092 0.94506 0.96133 0.95046 0.93951 0.93307 0.91934 0.88755 0.92360 0.91289 0.79311 0.80003 0.70932 0.86055 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.77 10.86 21.65 0.24 -57.54 16 2 C -0.07 -3.77 5.40 84.86 0.46 -3.31 16 3 Si 0.97 45.95 29.56 68.60 2.03 47.98 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.23 -12.84 10.35 84.03 0.87 -11.97 16 8 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 9 N -0.62 -30.71 3.38 -688.08 -2.32 -33.03 16 10 C 0.17 8.04 5.20 86.52 0.45 8.49 16 11 C -0.10 -3.74 3.33 -9.86 -0.03 -3.77 16 12 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 13 C -0.08 -2.23 3.15 -9.90 -0.03 -2.27 16 14 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 15 C 0.12 4.33 6.53 86.55 0.57 4.90 16 16 C -0.08 -1.31 2.86 -10.57 -0.03 -1.34 16 17 H 0.13 1.25 8.14 -2.39 -0.02 1.24 16 18 C -0.11 -2.21 5.30 30.58 0.16 -2.04 16 19 C -0.13 -3.47 5.52 30.68 0.17 -3.30 16 20 C 0.16 5.04 3.11 44.95 0.14 5.18 16 21 H 0.06 2.37 7.20 -2.39 -0.02 2.35 16 22 N -0.59 -12.64 2.81 -789.95 -2.22 -14.87 16 23 C 0.50 12.03 7.82 87.66 0.69 12.71 16 24 O -0.59 -21.68 16.02 -3.05 -0.05 -21.73 16 25 C 0.11 1.48 6.02 85.63 0.52 2.00 16 26 N -0.12 -2.72 3.49 -190.99 -0.67 -3.39 16 27 N -0.31 -6.93 12.13 -61.10 -0.74 -7.68 16 28 C 0.15 2.91 13.26 180.69 2.40 5.31 16 29 N -0.31 -8.23 12.50 -61.11 -0.76 -8.99 16 30 N -0.08 -2.03 13.25 37.02 0.49 -1.54 16 31 C 0.10 1.06 5.29 86.36 0.46 1.51 16 32 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.02 1.04 5.21 -2.39 -0.01 1.03 16 34 H 0.03 1.80 6.51 -2.39 -0.02 1.79 16 35 H 0.04 1.47 5.31 -2.39 -0.01 1.45 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.49 5.79 -2.39 -0.01 1.47 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 2.01 5.67 -2.39 -0.01 1.99 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.19 0.72 8.11 -2.39 -0.02 0.70 16 42 H 0.18 1.03 8.13 -2.39 -0.02 1.01 16 43 H 0.28 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.12 0.28 8.12 -2.39 -0.02 0.26 16 45 H 0.11 0.57 8.13 -2.39 -0.02 0.55 16 Total: -1.00 -86.92 349.71 3.78 -83.14 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.02 Total: 5.57 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.77 Total: 12.08 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.99 Total: -127.03 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -86.92 3.78 -83.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089816360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.051 kcal (2) G-P(sol) polarization free energy of solvation -86.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds