Wall clock time and date at job start Tue Mar 31 2020 17:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86288 * 109.47337 * 2 1 4 4 C 1.86305 * 109.46807 * 119.99962 * 2 1 3 5 5 N 1.46900 * 109.47128 * 294.85461 * 4 2 1 6 6 C 1.46890 * 111.00212 * 85.80003 * 5 4 2 7 7 C 1.53241 * 109.34096 * 187.24936 * 6 5 4 8 8 N 1.47071 * 108.52222 * 306.17473 * 7 6 5 9 9 C 1.34779 * 120.88233 * 231.18304 * 8 7 6 10 10 O 1.21685 * 119.99992 * 5.28408 * 9 8 7 11 11 C 1.46378 * 120.00269 * 185.28938 * 9 8 7 12 12 H 1.07998 * 119.99849 * 354.98662 * 11 9 8 13 13 C 1.40048 * 119.99817 * 174.99653 * 11 9 8 14 14 N 1.30670 * 120.00368 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99605 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47142 * 269.99698 * 15 13 11 17 17 H 1.48504 * 109.47408 * 29.99655 * 15 13 11 18 18 H 1.48500 * 109.46926 * 149.99605 * 15 13 11 19 19 C 1.47083 * 118.23886 * 51.45537 * 8 7 6 20 20 C 1.46900 * 110.99528 * 210.10540 * 5 4 2 21 21 C 1.86800 * 109.46959 * 239.99783 * 2 1 3 22 22 C 1.38233 * 119.99800 * 149.73244 * 21 2 1 23 23 C 1.38239 * 120.00105 * 179.76752 * 22 21 2 24 24 C 1.38238 * 119.99468 * 0.50142 * 23 22 21 25 25 C 1.38240 * 120.00256 * 359.74930 * 24 23 22 26 26 C 1.38233 * 119.99952 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47187 * 300.00580 * 1 2 3 28 28 H 1.09006 * 109.46973 * 59.99874 * 1 2 3 29 29 H 1.08992 * 109.47559 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47139 * 184.97574 * 3 2 1 31 31 H 1.09002 * 109.47390 * 304.97950 * 3 2 1 32 32 H 1.09003 * 109.47423 * 64.97846 * 3 2 1 33 33 H 1.08993 * 109.46854 * 174.84862 * 4 2 1 34 34 H 1.09000 * 109.46804 * 54.85365 * 4 2 1 35 35 H 1.09008 * 109.49462 * 67.29466 * 6 5 4 36 36 H 1.08995 * 109.49843 * 307.21662 * 6 5 4 37 37 H 1.08994 * 109.63167 * 186.45775 * 7 6 5 38 38 H 1.09000 * 109.62349 * 65.88202 * 7 6 5 39 39 H 0.97000 * 119.99725 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.62787 * 68.24975 * 19 8 7 41 41 H 1.09006 * 109.62952 * 188.83342 * 19 8 7 42 42 H 1.09001 * 109.49362 * 292.70031 * 20 5 4 43 43 H 1.09000 * 109.49853 * 52.78320 * 20 5 4 44 44 H 1.07993 * 119.99882 * 359.97438 * 22 21 2 45 45 H 1.07992 * 120.00426 * 180.23305 * 23 22 21 46 46 H 1.07998 * 119.99707 * 179.72466 * 24 23 22 47 47 H 1.07998 * 119.99710 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.99770 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7563 0.0000 4 6 2.4839 -0.8783 1.5212 5 7 2.0983 -0.1178 2.7174 6 6 0.7452 -0.4812 3.1588 7 6 0.3118 0.4560 4.2910 8 7 1.3389 0.4238 5.3432 9 6 1.0048 0.1989 6.6294 10 8 -0.1443 -0.0760 6.9204 11 6 2.0242 0.2854 7.6763 12 1 3.0582 0.4491 7.4109 13 6 1.6587 0.1555 9.0220 14 7 0.4076 -0.0423 9.3431 15 14 2.9598 0.2652 10.3579 16 1 3.5028 -1.0894 10.6324 17 1 4.0584 1.1569 9.9070 18 1 2.3524 0.8153 11.5963 19 6 2.7397 0.6495 4.9555 20 6 3.0782 -0.3013 3.7964 21 6 2.4856 -0.8807 -1.5252 22 6 3.6908 -0.5116 -2.0928 23 6 4.1540 -1.1665 -3.2187 24 6 3.4068 -2.1835 -3.7830 25 6 2.1991 -2.5491 -3.2184 26 6 1.7387 -1.8980 -2.0892 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.5704 1.7576 -0.0891 31 1 2.0497 2.2953 -0.8420 32 1 2.1954 2.2438 0.9312 33 1 3.5700 -0.9589 1.4763 34 1 2.0472 -1.8758 1.5684 35 1 0.7440 -1.5104 3.5181 36 1 0.0522 -0.3866 2.3229 37 1 -0.6414 0.1206 4.6994 38 1 0.2121 1.4715 3.9077 39 1 0.1545 -0.1318 10.2752 40 1 2.8688 1.6832 4.6348 41 1 3.3923 0.4420 5.8035 42 1 3.0445 -1.3329 4.1468 43 1 4.0771 -0.0761 3.4228 44 1 4.2722 0.2861 -1.6547 45 1 5.0973 -0.8807 -3.6599 46 1 3.7665 -2.6921 -4.6652 47 1 1.6152 -3.3433 -3.6595 48 1 0.7950 -2.1834 -1.6484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118368826.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:49 Heat of formation + Delta-G solvation = -31.846987 kcal Electronic energy + Delta-G solvation = -25932.796841 eV Core-core repulsion = 22416.739049 eV Total energy + Delta-G solvation = -3516.057792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.166 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -38.98896 -38.68983 -36.40724 -33.24867 -32.44959 -31.09835 -30.87918 -30.62573 -28.28928 -27.70668 -27.52969 -26.04997 -23.44122 -22.92096 -22.53841 -22.24148 -20.65819 -18.75569 -17.32410 -16.59245 -15.73473 -15.30436 -14.96390 -14.77824 -14.75362 -14.45034 -14.21260 -13.92664 -13.72929 -13.59751 -13.49866 -13.12282 -12.84447 -12.76827 -12.55992 -12.52514 -12.32258 -12.08167 -11.97982 -11.58851 -11.36490 -11.24826 -11.13645 -10.93736 -10.87311 -10.62637 -10.47655 -10.23680 -10.16799 -10.03356 -9.98996 -9.79997 -9.06297 -9.01091 -8.84813 -7.89055 -7.56188 -7.13768 -6.18722 -4.63292 1.09319 1.25981 2.59643 2.76451 2.78072 3.13838 3.20793 3.23860 3.48054 3.71287 4.08894 4.33907 4.57087 4.67412 4.76507 4.83094 4.91842 5.27256 5.34169 5.39186 5.44050 5.56049 5.61752 5.63098 5.67173 5.72399 5.75165 5.76863 5.82012 5.87416 5.93551 5.94964 5.99085 6.17986 6.25832 6.29749 6.31841 6.37047 6.43469 6.52526 6.53432 6.58616 6.77053 6.87536 7.28771 7.36119 7.46556 7.65884 8.15783 8.39380 9.03197 9.47308 10.59087 10.77897 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.002392 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.717185 B =11701.442905 C =12067.696840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.087 2.913 3 C -0.436 4.436 4 C -0.242 4.242 5 N -0.512 5.512 6 C 0.030 3.970 7 C 0.124 3.876 8 N -0.644 5.644 9 C 0.560 3.440 10 O -0.580 6.580 11 C -0.544 4.544 12 H 0.072 0.928 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.264 1.264 18 H -0.279 1.279 19 C 0.127 3.873 20 C 0.036 3.964 21 C -0.371 4.371 22 C -0.088 4.088 23 C -0.135 4.135 24 C -0.115 4.115 25 C -0.135 4.135 26 C -0.089 4.089 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.268 0.732 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 -1.047 -24.018 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.275 2.725 3 C -0.545 4.545 4 C -0.416 4.416 5 N -0.237 5.237 6 C -0.099 4.099 7 C -0.001 4.001 8 N -0.383 5.383 9 C 0.366 3.634 10 O -0.463 6.463 11 C -0.581 4.581 12 H 0.090 0.910 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.731 3.269 16 H -0.198 1.198 17 H -0.189 1.189 18 H -0.205 1.205 19 C 0.003 3.997 20 C -0.092 4.092 21 C -0.413 4.413 22 C -0.106 4.106 23 C -0.153 4.153 24 C -0.133 4.133 25 C -0.153 4.153 26 C -0.107 4.107 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.753 -0.795 -23.823 24.521 hybrid contribution 0.918 -1.110 0.646 1.578 sum 6.671 -1.905 -23.177 24.193 Atomic orbital electron populations 1.26279 1.20422 1.04321 1.04839 0.77810 0.66777 0.66698 0.61179 1.25977 1.05540 1.18208 1.04771 1.27263 1.05208 1.02305 1.06863 1.62168 1.02396 1.54681 1.04442 1.22812 0.90327 0.98239 0.98519 1.21216 0.93920 0.97520 0.87416 1.48223 1.05190 1.77509 1.07378 1.18245 0.89034 0.76397 0.79765 1.90583 1.21939 1.53089 1.80651 1.20974 0.94193 1.52821 0.90094 0.90975 1.25730 0.95444 0.92637 0.99420 1.70017 1.16824 1.34653 1.18235 0.86402 0.81320 0.78985 0.80235 1.19789 1.18851 1.20462 1.21589 0.85268 0.97052 0.95823 1.22792 0.95108 0.98839 0.92507 1.27519 0.98610 1.02891 1.12259 1.21125 0.95819 0.98503 0.95142 1.21244 0.99865 0.97088 0.97099 1.21168 0.95105 0.97381 0.99606 1.21242 0.96686 1.00312 0.97048 1.21124 0.99185 0.95198 0.95168 0.89906 0.91327 0.91477 0.91685 0.91922 0.89746 0.90639 0.93875 0.94839 0.89927 0.89719 0.93228 0.92132 0.93150 0.89002 0.94901 0.90944 0.86137 0.86528 0.86565 0.86549 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -4.03 7.62 101.05 0.77 -3.26 16 2 Si 1.09 9.33 10.94 -169.99 -1.86 7.47 16 3 C -0.44 -3.95 8.57 101.05 0.87 -3.08 16 4 C -0.24 -2.76 4.38 60.06 0.26 -2.49 16 5 N -0.51 -7.33 3.98 -168.58 -0.67 -8.00 16 6 C 0.03 0.47 5.28 -3.71 -0.02 0.45 16 7 C 0.12 2.45 6.61 -3.61 -0.02 2.42 16 8 N -0.64 -14.86 3.00 -173.85 -0.52 -15.38 16 9 C 0.56 16.06 7.63 -12.98 -0.10 15.96 16 10 O -0.58 -18.89 14.49 5.20 0.08 -18.81 16 11 C -0.54 -15.28 8.86 -35.63 -0.32 -15.59 16 12 H 0.07 1.84 5.74 -52.49 -0.30 1.54 16 13 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 14 N -0.77 -23.09 11.84 55.55 0.66 -22.43 16 15 Si 0.91 20.08 29.56 -169.99 -5.02 15.05 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 C 0.13 2.41 6.50 -3.36 -0.02 2.38 16 20 C 0.04 0.58 5.55 -3.46 -0.02 0.56 16 21 C -0.37 -3.39 4.59 -39.58 -0.18 -3.57 16 22 C -0.09 -0.79 9.29 -39.58 -0.37 -1.16 16 23 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 26 C -0.09 -0.81 9.29 -39.58 -0.37 -1.18 16 27 H 0.08 0.81 6.26 -51.93 -0.32 0.49 16 28 H 0.07 0.55 7.96 -51.93 -0.41 0.14 16 29 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 30 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 31 H 0.06 0.52 7.96 -51.93 -0.41 0.10 16 32 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 33 H 0.07 0.81 7.43 -51.93 -0.39 0.43 16 34 H 0.04 0.51 7.67 -51.93 -0.40 0.11 16 35 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.08 1.08 4.61 -51.93 -0.24 0.84 16 37 H 0.08 1.86 7.04 -51.93 -0.37 1.50 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.80 5.46 -51.93 -0.28 1.52 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 44 H 0.12 0.88 7.24 -52.49 -0.38 0.50 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.91 7.43 -52.49 -0.39 0.52 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -35.20 385.75 -9.93 -45.13 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.60 Total: 1.91 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.81 Total: -10.76 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.54 Total: -45.81 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.08 Total: -18.81 kcal Atomic # 14 Polarization: 29.41 SS G_CDS: -6.88 Total: 22.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.20 -9.93 -45.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118368826.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.287 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds